5NF0 | pdb_00005nf0


ZDC: 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid

ZDC is a Ligand Of Interest in 5NF0 designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5NF0_ZDC_D_302Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5NF0_ZDC_D_302Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5NF0_ZDC_D_302 93% 37% 0.07 0.9641.17 1.32 1 200100%1
5NF0_ZDC_A_304 91% 28% 0.072 0.9581.09 1.76 1 500100%1
5NF0_ZDC_B_304 88% 35% 0.074 0.9481.14 1.41 - 300100%1
5NF0_ZDC_C_302 84% 43% 0.085 0.9481.13 1.06 - 100100%1
8AN9_ZDC_F_201 98% 30% 0.045 0.9680.97 1.78 - 400100%1
8ANR_ZDC_C_101 98% 31% 0.056 0.9780.93 1.77 - 500100%1
8AOO_ZDC_I_101 97% 40% 0.064 0.980.9 1.43 - 300100%1
5NGQ_ZDC_E_301 97% 36% 0.064 0.9791.07 1.43 - 300100%1
5NES_ZDC_A_305 96% 31% 0.065 0.9741.02 1.69 - 300100%1