GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5V9H designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5V9H_GDP_A_706 | 59% | 41% | 0.138 | 0.922 | 0.93 | 1.23 | - | 5 | 0 | 0 | 100% | 1 |
| 5V9H_GDP_B_705 | 58% | 44% | 0.135 | 0.916 | 0.9 | 1.15 | - | 4 | 0 | 0 | 100% | 1 |
| 3DTB_GDP_A_800 | 97% | 48% | 0.058 | 0.984 | 0.85 | 1.06 | 1 | 2 | 0 | 0 | 100% | 0.8 |
| 4GNP_GDP_A_701 | 92% | 41% | 0.068 | 0.966 | 0.89 | 1.28 | 1 | 4 | 1 | 0 | 100% | 1 |
| 2QF2_GDP_A_702 | 89% | 47% | 0.082 | 0.966 | 0.9 | 1.06 | - | 3 | 0 | 0 | 100% | 0.7 |
| 5FH5_GDP_A_703 | 89% | 42% | 0.088 | 0.972 | 0.9 | 1.22 | 1 | 2 | 0 | 0 | 100% | 1 |
| 9EIY_GDP_A_705 | 87% | 43% | 0.064 | 0.941 | 1 | 1.1 | 1 | 1 | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 22% | 0.012 | 0.999 | 2.28 | 0.95 | 3 | 2 | 8 | 0 | 100% | 1 |
| 9C3K_GDP_B_201 | 100% | 38% | 0.014 | 0.998 | 1.15 | 1.18 | 1 | 3 | 0 | 0 | 100% | 1 |
| 8ECR_GDP_A_302 | 100% | 28% | 0.017 | 0.998 | 1.48 | 1.32 | 2 | 4 | 0 | 0 | 100% | 1 |
| 9BL0_GDP_A_201 | 100% | 44% | 0.016 | 0.998 | 0.96 | 1.11 | 1 | 2 | 1 | 0 | 100% | 1 |
| 9C3N_GDP_A_202 | 100% | 36% | 0.017 | 0.998 | 1.36 | 1.06 | 3 | 1 | 0 | 0 | 100% | 1 |
