5YSH | pdb_00005ysh


B12: COBALAMIN

B12 is a Ligand Of Interest in 5YSH designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5YSH_B12_E_1601Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5YSH_B12_E_1601Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5YSH_B12_E_1601Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5YSH_B12_E_1601 85% 27% 0.105 0.9711.58 1.35 8 19 130100%1
5YSH_B12_H_1601 84% 26% 0.11 0.9711.65 1.33 8 19 150100%1
5YSH_B12_B_1601 73% 26% 0.134 0.9611.69 1.29 8 16110100%1
5YSH_B12_K_1601 52% 25% 0.177 0.9371.76 1.31 9 17170100%1
5YRT_B12_K_1601 97% 30% 0.072 0.9861.56 1.24 8 17120100%1
5YRV_B12_K_1601 96% 29% 0.071 0.9821.57 1.29 8 1580100%1
7XRL_B12_B_301 95% 37% 0.079 0.9811.26 1.21 8 13130100%1
7XRK_B12_B_301 79% 37% 0.118 0.9641.28 1.19 8 13120100%1
3KQ4_B12_E_2007 100% 12% 0.04 0.9961.51 2.55 10 38 461100%1
8IXU_B12_A_501 100% 63% 0.045 0.990.63 0.79 1 3140100%1
9CG1_B12_A_504 99% 55% 0.047 0.9860.76 0.99 2 790100%1
4LEM_B12_A_601 99% 19% 0.051 0.981.29 2.13 8 34 160100%1
5D08_B12_A_503 99% 55% 0.054 0.9830.72 1.01 3 1080100%1