XYP: beta-D-xylopyranose

XYP is a Ligand Of Interest in 7PLC designated by the Author


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter7PLC_XYP_D_302Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter7PLC_XYP_D_302Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter7PLC_XYP_D_302Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
7PLC_XYP_D_302 65% 60% 0.114 0.9160.58 0.95 - 100100%1
7PLC_XYP_A_301 63% 60% 0.125 0.9190.53 0.97 - 100100%1
7PLC_XYP_B_301 61% 62% 0.136 0.9240.59 0.84 - 100100%1
7PLC_XYP_C_303 53% 62% 0.134 0.8940.58 0.85 - 100100%1
7PLC_XYP_C_301 46% 60% 0.15 0.8850.59 0.93 - 100100%1
7PLC_XYP_A_303 38% 60% 0.167 0.8690.56 0.98 - 110100%1
7PLB_XYP_A_303 76% 56% 0.085 0.920.61 1.07 - 100100%1
1OD8_XYP_A_1311 100% 64% 0.047 0.9920.75 0.64 - -00100%1
1V0M_XYP_A_1304 100% 71% 0.035 0.9930.82 0.33 - -0090%1
8Y00_XYP_D_201 99% 28% 0.032 0.9860.63 2.19 - 71090%1
2WYS_XYP_A_1001 99% 38% 0.052 0.9830.69 1.7 - 430100%1
4PMY_XYP_A_401 99% 73% 0.051 0.9790.49 0.57 - -00100%1