API

2,6-DIAMINOPIMELIC ACID

Created:	1999-07-08
Last modified:	2024-09-27

Find Related PDB Entry
20 entries where API is found as a standalone ligand1 entries where API is covalently linked to polymer or other heterogen groups 14 entries where API is found in a polymer sequence

Help Find related ligands:
Similar Ligands (Stereospecific) Similar Ligands (including Stereoisomers) Similar Ligands (Quick Screen) Similar Ligands (Substructure Stereospecific) Similar Ligands (Substructure including Stereoisomers)

Help

Find related ligands:

Similar Ligands (Stereospecific) Similar Ligands (including Stereoisomers) Similar Ligands (Quick Screen) Similar Ligands (Substructure Stereospecific) Similar Ligands (Substructure including Stereoisomers)

Chemical Details
Formal Charge	0
Atom Count	27
Chiral Atom Count	2
Bond Count	26
Aromatic Bond Count	0

Toggle Hydrogen Toggle Labels

Chemical Component Summary
Name	2,6-DIAMINOPIMELIC ACID
Systematic Name (OpenEye OEToolkits)	(2S,6R)-2,6-bis(azanyl)heptanedioic acid
Formula	C₇ H₁₄ N₂ O₄
Molecular Weight	190.197
Type	L-PEPTIDE LINKING

Chemical Descriptors
Type	Program	Version	Descriptor
SMILES	ACDLabs	12.01	O=C(O)C(N)CCCC(C(=O)O)N
SMILES	CACTVS	3.370	N[CH](CCC[CH](N)C(O)=O)C(O)=O
SMILES	OpenEye OEToolkits	1.7.2	C(CC(C(=O)O)N)CC(C(=O)O)N
Canonical SMILES	CACTVS	3.370	N[C@@H](CCC[C@@H](N)C(O)=O)C(O)=O
Canonical SMILES	OpenEye OEToolkits	1.7.2	C(C[C@H](C(=O)O)N)C[C@@H](C(=O)O)N
InChI	InChI	1.03	InChI=1S/C7H14N2O4/c8-4(6(10)11)2-1-3-5(9)7(12)13/h4-5H,1-3,8-9H2,(H,10,11)(H,12,13)/t4-,5+
InChIKey	InChI	1.03	GMKMEZVLHJARHF-SYDPRGILSA-N

Drug Info: DrugBank

DrugBank ID	DB03590
Name	2,6-Diaminopimelic Acid
Groups	experimental
Synonyms	2,6-Diaminopimelic Acid
Categories	Acids, Acyclic Amino Acids Amino Acids, Diamino Amino Acids, Peptides, and Proteins Diaminopimelic Acid Dicarboxylic Acids Pimelic Acids

Drug Targets

Name	Target Sequence	Pharmacological Action	Actions
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase	MADRNLRDLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRR...	unknown
Meso-diaminopimelate D-dehydrogenase	MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVA...	unknown

Drug Info/Drug Targets: DrugBank 3.0: a comprehensive resource for 'omics' research on drugs. Knox C, Law V, Jewison T, Liu P, Ly S, Frolkis A, Pon A, Banco K, Mak C, Neveu V, Djoumbou Y, Eisner R, Guo AC, Wishart DS. Nucleic Acids Res. 2011 Jan; 39 (Database issue):D1035-41. | PMID:21059682