RCSB PDB - EF2 Ligand Summary Page

EF2

S-Thalidomide

Created:2013-12-05
Last modified:  2014-09-05

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Chemical Details

Formal Charge0
Atom Count29
Chiral Atom Count1
Bond Count31
Aromatic Bond Count6
2D diagram of EF2

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Chemical Component Summary

NameS-Thalidomide
Systematic Name (OpenEye OEToolkits)2-[(3S)-2,6-bis(oxidanylidene)piperidin-3-yl]isoindole-1,3-dione
FormulaC13 H10 N2 O4
Molecular Weight258.229
TypeNON-POLYMER

Chemical Descriptors

TypeProgramVersionDescriptor
SMILESACDLabs12.01O=C1NC(=O)CCC1N3C(=O)c2ccccc2C3=O
SMILESCACTVS3.385O=C1CC[CH](N2C(=O)c3ccccc3C2=O)C(=O)N1
SMILESOpenEye OEToolkits1.9.2c1ccc2c(c1)C(=O)N(C2=O)C3CCC(=O)NC3=O
Canonical SMILESCACTVS3.385 O=C1CC[C@H](N2C(=O)c3ccccc3C2=O)C(=O)N1
Canonical SMILESOpenEye OEToolkits1.9.2 c1ccc2c(c1)C(=O)N(C2=O)[C@H]3CCC(=O)NC3=O
InChIInChI1.03 InChI=1S/C13H10N2O4/c16-10-6-5-9(11(17)14-10)15-12(18)7-3-1-2-4-8(7)13(15)19/h1-4,9H,5-6H2,(H,14,16,17)/t9-/m0/s1
InChIKeyInChI1.03 UEJJHQNACJXSKW-VIFPVBQESA-N

Related Resource References

Resource NameReference
PubChem 92142
ChEMBL CHEMBL426123
ChEBI CHEBI:61918
CCDC/CSD THALID10, THALID12, THALID11, THALID03
COD 1518142, 1513336, 1513335