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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 1.13.11.11

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Search Summary

This query matches 134 Structures.

Refinements

Structure Determination Methodology

	computational (98)
	experimental (36)

CSM Source Database

AlphaFoldDB (98)

pLDDT Global Quality Score

	70.0 - 90.0 (12)
	> 90.0 (86)

Scientific Name of Source Organism

	Homo sapiens (23)
	Drosophila melanogaster (5)
	Xanthomonas campestris pv. campestris (5)
	Xanthomonas campestris pv. campestris str. ATCC 33913 (3)
	Danio rerio (2)
	Ralstonia pseudosolanacearum GMI1000 (2)
	Shewanella oneidensis MR-1 (2)
	Aedes aegypti (1)
	Alteromonas mediterranea DE (1)
	Anaeromyxobacter dehalogenans 2CP-C (1)

More...

Taxonomy

	Bacteria (80)
	Eukaryota (54)

Experimental Method

X-RAY DIFFRACTION (36)

Polymer Entity Type

Protein (134)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (17)
	2.5 - 3.0 (12)
	3.0 - 3.5 (3)

Release Date

	2005 - 2009 (9)
	2010 - 2014 (2)
	2015 - 2019 (3)
	2020 - 2024 (117)
	2025 - 2029 (3)

Enzyme Classification Name

Oxidoreductases (134)

Symmetry Type

	Asymmetric (98)
	Dihedral (36)
	Cyclic (1)

SCOP Classification

	All alpha proteins (9)
	Artifacts (1)

AllSelected

1 to 25 of 134 Structures

Page 1 of 6

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1YW0	Download File View File

Crystal structure of the tryptophan 2,3-dioxygenase from Xanthomonas campestris. Northeast Structural Genomics Target XcR13.

Vorobiev, S.M., Abashidze, M., Forouhar, F., Kuzin, A., Xiao, R., Ciano, M., Aton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2005-03-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Xanthomonas campestris pv. campestris str. ATCC 33913
Macromolecule	tryptophan 2,3-dioxygenase (protein)
Unique Ligands	MG

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1ZEE	Download File View File

X-Ray Crystal Structure of Protein SO4414 from Shewanella oneidensis. Northeast Structural Genomics Consortium Target SoR52.

Forouhar, F., Abashidze, M., Vorobiev, S.M., Conover, K., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2005-05-03
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Shewanella oneidensis MR-1
Macromolecule	hypothetical protein SO4414 (protein)

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2NOX	Download File View File

Crystal structure of tryptophan 2,3-dioxygenase from Ralstonia metallidurans

Zhang, Y., Kang, S.A., Mukherjee, T., Bale, S., Crane, B.R., Begley, T.P., Ealick, S.E.

(2007) Biochemistry 46: 145-155

Released	2006-12-19
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Cupriavidus metallidurans
Macromolecule	Tryptophan 2,3-dioxygenase (protein)
Unique Ligands	HEM

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2NW7	Download File View File

Crystal Structure of Tryptophan 2,3-dioxygenase (TDO) from Xanthomonas campestris in complex with ferric heme. Northeast Structural Genomics Target XcR13

Forouhar, F., Anderson, J.L.R., Mowat, C.G., Hussain, A., Bruckmann, C., Thackray, S.J., Seetharaman, J., Tucker, T., Ho, C.K., Ma, L.C., Cunningham, K., Janjua, H., Zhao, L., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Chapman, S.K., Tong, L., Northeast Structural Genomics Consortium (NESG)

(2007) Proc Natl Acad Sci U S A 104: 473-478

Released	2006-12-19
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Xanthomonas campestris pv. campestris
Macromolecule	Tryptophan 2,3-dioxygenase (protein)
Unique Ligands	HEM

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2NW8	Download File View File

Crystal Structure of Tryptophan 2,3-dioxygenase (TDO) from Xanthomonas campestris in complex with ferrous heme and tryptophan. Northeast Structural Genomics Target XcR13.

Forouhar, F., Anderson, J.L.R., Mowat, C.G., Bruckmann, C., Thackray, S.J., Seetharaman, J., Ho, C.K., Ma, L.C., Cunningham, K., Janjua, H., Zhao, L., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Champman, S.K., Tong, L., Northeast Structural Genomics Consortium (NESG)

(2007) Proc Natl Acad Sci U S A 104: 473-478

Released	2006-12-19
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Xanthomonas campestris pv. campestris
Macromolecule	Tryptophan 2,3-dioxygenase (protein)
Unique Ligands	HEM, MN, TRP

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2NW9	Download File View File

Crystal Structure of Tryptophan 2,3-dioxygenase (TDO) from Xanthomonas campestris in complex with ferrous heme and 6-fluoro-tryptophan. Northeast Structural Genomics Target XcR13

(2007) Proc Natl Acad Sci U S A 104: 473-478

Released	2006-12-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Xanthomonas campestris pv. campestris
Macromolecule	Tryptophan 2,3-dioxygenase (protein)
Unique Ligands	FT6, HEM, MN

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2NWB	Download File View File

Crystal Structure of a Putative 2,3-dioxygenase (SO4414) from Shewanella oneidensis in complex with ferric heme. Northeast Structural Genomics Target SoR52.

Forouhar, F., Anderson, J.L.R., Mowat, C.G., Hussain, A., Seetharaman, J., Bruckmann, C., Thackray, S.J., Khan, N., Cunningham, K., Janjua, H., Zhao, L., Xiao, R., Ma, L.C., Liu, J., Baran, M.C., Acton, T.B., Rost, B., Montelione, G.T., Champman, S.K., Tong, L., Northeast Structural Genomics Consortium (NESG)

(2007) Proc Natl Acad Sci U S A 104: 473-478

Released	2006-12-19
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Shewanella oneidensis MR-1
Macromolecule	Conserved domain protein (protein)
Unique Ligands	HEM

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3BK9	Download File View File

H55A mutant of tryptophan 2,3-dioxygenase from Xanthomonas campestris

Bruckmann, C., Mowat, C.G.

(2008) Biochemistry 47: 10677-10684

Released	2008-09-30
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Xanthomonas campestris pv. campestris
Macromolecule	Tryptophan 2,3-dioxygenase (protein)
Unique Ligands	HEM, TRP

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3E08	Download File View File

H55S mutant Xanthomonas campestris tryptophan 2,3-dioxygenase

Mowat, C.G., Campbell, L.P.

(2008) Biochemistry 47: 10677-10684

Released	2008-09-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Xanthomonas campestris pv. campestris
Macromolecule	Tryptophan 2,3-dioxygenase (protein)
Unique Ligands	HEM, TRP

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4HKA	Download File View File

Crystal structure of Drosophila melanogaster tryptophan 2,3-dioxygenase in complex with HEME

Huang, W., Ding, J.

(2013) J Struct Biol 181: 291-299

Released	2013-03-27
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Drosophila melanogaster
Macromolecule	Tryptophan 2,3-dioxygenase (protein)
Unique Ligands	HEM

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4PW8	Download File View File

Human tryptophan 2,3-dioxygenase

Meng, B., Wu, D., Gu, J.H., Ouyang, S.Y., Ding, W., Liu, Z.J.

(2014) Proteins 82: 3210-3216

Released	2014-08-06
Method	X-RAY DIFFRACTION 2.902 Å
Organisms	Homo sapiens
Macromolecule	Tryptophan 2,3-dioxygenase (protein)
Unique Ligands	CO

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5TI9	Download File View File

Crystal structure of human TDO in complex with Trp and dioxygen, Northeast Structural Genomics Consortium Target HR6161

Forouhar, F., Lewis-Ballester, A., Lew, S., Karkashon, S., Seetharaman, J., Yeh, S.R., Tong, L.

(2016) Sci Rep 6: 35169-35169

Released	2016-10-26
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Tryptophan 2,3-dioxygenase (protein)
Unique Ligands	HEM, NFK, OXY, PO4, TRP

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5TIA	Download File View File

Crystal structure of human TDO in complex with Trp, Northeast Structural Genomics Consortium Target HR6161

Forouhar, F., Lewis-Ballester, A., Lew, S., Karkashon, S., Seetharaman, J., Yeh, S.R., Tong, L.

(2016) Sci Rep 6: 35169-35169

Released	2016-10-26
Method	X-RAY DIFFRACTION 2.441 Å
Organisms	Homo sapiens
Macromolecule	Tryptophan 2,3-dioxygenase (protein)
Unique Ligands	HEM, TRP

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6A4I	Download File View File

Crystal Structure of human TDO inhibitor complex

Fu, G., Wang, J., Luo, G., Wu, G., Qian, K.

To be published

Released	2018-07-18
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	Tryptophan 2,3-dioxygenase (protein)
Unique Ligands	9R9, CIT, HEM, TRP

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6PYY	Download File View File

Crystal Structure of human Tryptophan 2,3-dioxygenase in complex with PF-06840003 in Active Site and Exo site

Pham, K.N., Lewis-Ballester, A., Yeh, S.R.

(2019) J Am Chem Soc 141: 18771-18779

Released	2020-01-01
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Tryptophan 2,3-dioxygenase (protein)
Unique Ligands	H7S, HEM

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6PYZ	Download File View File

Crystal Structure of human Tryptophan 2,3-dioxygenase in complex with PF-06840003 in Active Site

Pham, K.N., Lewis-Ballester, A., Yeh, S.R.

(2019) J Am Chem Soc 141: 18771-18779

Released	2020-01-01
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Homo sapiens
Macromolecule	Tryptophan 2,3-dioxygenase (protein)
Unique Ligands	H7S, HEM, ZIQ

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6UD5	Download File View File

Crystal structure of human tryptophan 2,3-dioxygenase in complex with carbon monoxide and tryptophan

Pham, K.N., Lewis-Ballester, A., Yeh, S.R.

(2021) J Am Chem Soc 143: 1836-1845

Released	2021-02-03
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Tryptophan 2,3-dioxygenase (protein)
Unique Ligands	CMO, HEM, TRP

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6VBN	Download File View File

Crystal Structure of hTDO2 bound to inhibitor GNE1

Harris, S.F., Oh, A.

(2020) ACS Med Chem Lett 11: 541-549

Released	2020-05-06
Method	X-RAY DIFFRACTION 3.18 Å
Organisms	Homo sapiens
Macromolecule	Tryptophan 2,3-dioxygenase (protein)
Unique Ligands	HEM, QVY

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7LU7	Download File View File

Human TDO (hTDO) in complex with NLG919 analog

Yeh, S.-R.

(2024) J Med Chem

Released	2022-08-24
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Tryptophan 2,3-dioxygenase (protein)
Unique Ligands	5PK, HEM, ZIQ

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7P46	Download File View File

Crystal Structure of Xanthomonas campestris Tryptophan 2,3-dioxygenase (TDO)

Kwon, H., Basran, J., Booth, E.S., Campbell, L.P., Thackray, S.J., Moody, P.C.E., Mowat, C.G., Raven, E.L.

(2021) J Inorg Biochem 225: 111604-111604

Released	2021-10-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Xanthomonas campestris pv. campestris str. ATCC 33913
Macromolecule	Tryptophan 2,3-dioxygenase (protein)
Unique Ligands	CYN, GOL, HEM, KYN, TRP