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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Altman, R.B."

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Escherichia coli K-12 (8)
	Homo sapiens (6)
	Escherichia coli (5)
	Escherichia coli BL21 (5)
	Thermus thermophilus HB8 (4)
	Tequatrovirus T4 (2)
	Escherichia coli str. K-12 substr. MG1655 (1)

Taxonomy

	Bacteria (13)
	Eukaryota (6)
	Duplodnaviria (2)

Experimental Method

	ELECTRON MICROSCOPY (12)
	X-RAY DIFFRACTION (5)

Polymer Entity Type

	Protein (17)
	RNA (17)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (3)
	2.5 - 3.0 (11)
	3.0 - 3.5 (2)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (4)
	2020 - 2024 (12)

Enzyme Classification Name

	Lyases (6)
	Hydrolases (4)

Symmetry Type

Asymmetric (17)

AllSelected

1 to 17 of 17 Structures

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4WF1	Download File View File

Crystal structure of the E. coli ribosome bound to negamycin.

Olivier, N.B., Altman, R.B., Noeske, J., Basarab, G.S., Code, E., Ferguson, A.D., Gao, N., Huang, J., Juette, M.F., Livchak, S., Miller, M.D., Prince, D.B., Cate, J.H.D., Buurman, E.T., Blanchard, S.C.

(2014) Proc Natl Acad Sci U S A 111: 16274-16279

Released	2014-11-05
Method	X-RAY DIFFRACTION 3.09 Å
Organisms	Escherichia coli K-12 Escherichia coli str. K-12 substr. MG1655 Thermus thermophilus HB8
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 3
Unique Ligands	MG, NEG, ZN

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4YBB	Download File View File

High-resolution structure of the Escherichia coli ribosome

Noeske, J., Wasserman, M.R., Terry, D.S., Altman, R.B., Blanchard, S.C., Cate, J.H.D.

(2015) Nat Struct Mol Biol 22: 336-341

Released	2015-03-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli K-12
Macromolecule	Unique protein chains: 51 Unique nucleic acid chains: 4
Unique Ligands	1PE, ACY, EDO, GUN, MG, MPD, PEG, PG4, PGE, PUT, SPD, TRS, ZN

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4Z3S	Download File View File

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution

Polikanov, Y.S., Starosta, A.L., Juette, M.F., Altman, R.B., Terry, D.S., Lu, W., Burnett, B.J., Dinos, G., Reynolds, K., Blanchard, S.C., Steitz, T.A., Wilson, D.N.

(2015) Mol Cell 58: 832-844

Released	2015-06-03
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Escherichia coli Tequatrovirus T4 Thermus thermophilus HB8
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	4M2, FME, K, MG, SF4, ZN

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5DOX	Download File View File

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Hygromycin-A at 3.1A resolution

Polikanov, Y.S., Starosta, A.L., Juette, M.F., Altman, R.B., Terry, D.S., Lu, W., Burnett, B.J., Dinos, G., Reynolds, K., Blanchard, S.C., Steitz, T.A., Wilson, D.N.

(2015) Mol Cell 58: 832-844

Released	2015-12-30
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 3
Unique Ligands	HGR, MG, SF4, ZN

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5DOY	Download File View File

Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution

Polikanov, Y.S., Starosta, A.L., Juette, M.F., Altman, R.B., Terry, D.S., Lu, W., Burnett, B.J., Dinos, G., Reynolds, K., Blanchard, S.C., Steitz, T.A., Wilson, D.N.

(2015) Mol Cell 58: 832-844

Released	2015-12-30
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli Tequatrovirus T4 Thermus thermophilus HB8
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 6
Unique Ligands	FME, HGR, K, MG, SF4, ZN

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7N1P	Download File View File

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Rundlet, E.J., Holm, M., Schacherl, M., Natchiar, S.K., Altman, R.B., Spahn, C.M.T., Myasnikov, A.G., Blanchard, S.C.

(2021) Nature 595: 741-745

Released	2021-07-14
Method	ELECTRON MICROSCOPY 2.33 Å
Organisms	Escherichia coli BL21 Escherichia coli K-12
Macromolecule	Unique protein chains: 52 Unique nucleic acid chains: 6
Unique Ligands	ATP, MG, PUT, SPD, ZN

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7N2C	Download File View File

Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

Rundlet, E.J., Holm, M., Schacherl, M., Natchiar, K.S., Altman, R.B., Spahn, C.M.T., Myasnikov, A.G., Blanchard, S.C.

(2021) Nature 595: 741-745

Released	2021-07-14
Method	ELECTRON MICROSCOPY 2.72 Å
Organisms	Escherichia coli Escherichia coli K-12
Macromolecule	Unique protein chains: 55 Unique nucleic acid chains: 6
Unique Ligands	ATP, FUA, GDP, MG, PUT, SPD, ZN

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7N2U	Download File View File

Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformation

Rundlet, E.J., Holm, M., Schacherl, M., Natchiar, K.S., Altman, R.B., Spahn, C.M.T., Myasnikov, A.G., Blanchard, S.C.

(2021) Nature 595: 741-745

Released	2021-07-14
Method	ELECTRON MICROSCOPY 2.53 Å
Organisms	Escherichia coli BL21 Escherichia coli K-12
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 6
Unique Ligands	ATP, MG, PUT, SPD, ZN

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7N2V	Download File View File

Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)

Rundlet, E.J., Holm, M., Schacherl, M., Natchiar, K.S., Altman, R.B., Spahn, C.M.T., Myasnikov, A.G., Blanchard, S.C.

(2021) Nature 595: 741-745

Released	2021-07-14
Method	ELECTRON MICROSCOPY 2.54 Å
Organisms	Escherichia coli BL21 Escherichia coli K-12
Macromolecule	Unique protein chains: 53 Unique nucleic acid chains: 6
Unique Ligands	ATP, GTP, MG, PUT, SCM, SPD, ZN

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7N30	Download File View File

Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation

Rundlet, E.J., Holm, M., Schacherl, M., Natchiar, K.S., Altman, R.B., Spahn, C.M.T., Myasnikov, A.G., Blanchard, S.C.

(2021) Nature 595: 741-745

Released	2021-07-14
Method	ELECTRON MICROSCOPY 2.66 Å
Organisms	Escherichia coli BL21 Escherichia coli K-12
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 6
Unique Ligands	ATP, MG, PUT, SPD, ZN

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7N31	Download File View File

Elongating 70S ribosome complex in a post-translocation (POST) conformation

Rundlet, E.J., Holm, M., Schacherl, M., Natchiar, K.S., Altman, R.B., Spahn, C.M.T., Myasnikov, A.G., Blanchard, S.C.

(2021) Nature 595: 741-745

Released	2021-07-14
Method	ELECTRON MICROSCOPY 2.69 Å
Organisms	Escherichia coli BL21 Escherichia coli K-12
Macromolecule	Unique protein chains: 50 Unique nucleic acid chains: 6
Unique Ligands	ATP, MG, PUT, SPD, ZN

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8G5Y	Download File View File

mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Altman, R.B., Blanchard, S.C.

(2023) Nature 617: 200-207

Released	2023-04-19
Method	ELECTRON MICROSCOPY 2.29 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 77 Unique nucleic acid chains: 6
Unique Ligands	3H3, ANM, K, MET, MG, PUT, SPD, ZN

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8G5Z	Download File View File

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Altman, R.B., Blanchard, S.C.

(2023) Nature 617: 200-207

Released	2023-04-19
Method	ELECTRON MICROSCOPY 2.64 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Unique protein chains: 80 Unique nucleic acid chains: 7
Unique Ligands	3H3, ANM, GSP, K, MET, MG, PHE, PUT, SPD, ZIY, ZN

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8G60	Download File View File

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Altman, R.B., Blanchard, S.C.

(2023) Nature 617: 200-207

Released	2023-04-19
Method	ELECTRON MICROSCOPY 2.54 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 79 Unique nucleic acid chains: 7
Unique Ligands	3H3, ANM, GSP, K, MET, MG, PHE, PUT, SPD, ZIY, ZN

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8G61	Download File View File

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Altman, R.B., Blanchard, S.C.

(2023) Nature 617: 200-207

Released	2023-04-19
Method	ELECTRON MICROSCOPY 2.94 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Unique protein chains: 77 Unique nucleic acid chains: 7
Unique Ligands	3H3, ANM, K, MET, MG, PUT, SPD, ZN

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8G6J	Download File View File

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Altman, R.B., Blanchard, S.C.

(2023) Nature 617: 200-207

Released	2023-04-19
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 79 Unique nucleic acid chains: 7
Unique Ligands	3HE, GSP, HMT, K, MET, MG, PHE, PUT, SPD, YRB, ZN

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8GLP	Download File View File

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Holm, M., Natchiar, K.S., Rundlet, E.J., Myasnikov, A.G., Watson, Z.L., Altman, R.B., Blanchard, S.C.

(2023) Nature 617: 200-207

Released	2023-04-19
Method	ELECTRON MICROSCOPY 1.67 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 75 Unique nucleic acid chains: 6
Unique Ligands	3H3, ANM, K, MET, MG, PUT, SPD, TRS, ZN

1 to 17 of 17 Structures

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