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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Borowski, T."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Streptomyces kanamyceticus (6)
	Datura metel (3)
	Bacillus anthracis str. 'Ames Ancestor (2)
	Papaver somniferum (2)
	Homo sapiens (1)

Taxonomy

	Bacteria (8)
	Eukaryota (6)

Experimental Method

X-RAY DIFFRACTION (14)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (3)
	2.0 - 2.5 (4)
	2.5 - 3.0 (3)
	3.0 - 3.5 (2)

Release Date

	2010 - 2014 (2)
	2015 - 2019 (3)
	2020 - 2024 (9)

Enzyme Classification Name

	Oxidoreductases (11)
	Transferases (2)

Symmetry Type

Asymmetric (14)

SCOP Classification

All beta proteins (1)

AllSelected

1 to 14 of 14 Structures

Page 1 of 1

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Explore in 3D

4QGL \| pdb_00004qgl	Download File View File

Acireductone dioxygenase from Bacillus anthracis with three cadmium ions

Milaczewska, A.M., Chruszcz, M., Majorek, K.A., Porebski, P.J., Borowski, T., Anderson, W.F., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2014-06-18
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Bacillus anthracis str. 'Ames Ancestor
Macromolecule	Acireductone dioxygenase (protein)
Unique Ligands	CD

Explore in 3D

4QGM \| pdb_00004qgm	Download File View File

Acireductone dioxygenase from Bacillus anthracis with cadmium ion in active center

Milaczewska, A.M., Chruszcz, M., Shabalin, I.G., Cooper, D.R., Borowski, T., Anderson, W.F., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2014-06-18
Method	X-RAY DIFFRACTION 2.97 Å
Organisms	Bacillus anthracis str. 'Ames Ancestor
Macromolecule	Acireductone dioxygenase (protein)
Unique Ligands	CD

Explore in 3D

4QGN \| pdb_00004qgn	Download File View File

Human acireductone dioxygenase with iron ion and L-methionine in active center

Milaczewska, A.M., Chruszcz, M., Petkowski, J.J., Niedzialkowska, E., Minor, W., Borowski, T.

(2018) Chemistry 24: 5225-5237

Released	2015-05-27
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Homo sapiens
Macromolecule	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (protein)
Unique Ligands	ACT, CL, FE, MSE, SO4

Explore in 3D

5O7Y \| pdb_00005o7y	Download File View File

Thebaine 6-O-demethylase (T6ODM) from Papaver somniferum in complex with succinate

Kluza, A., Niedzialkowska, E., Kurpiewska, K., Porebski, P.J., Borowski, T.

(2018) J Struct Biol 202: 229-235

Released	2018-02-14
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Papaver somniferum
Macromolecule	Thebaine 6-O-demethylase (protein)
Unique Ligands	EDO, NI, PEG, SIN

Explore in 3D

5O9W \| pdb_00005o9w	Download File View File

Thebaine 6-O-demethylase (T6ODM) from Papaver somniferum in complex with 2-oxoglutarate

Kluza, A., Niedzialkowska, E., Kurpiewska, K., Porebski, P.J., Borowski, T.

(2018) J Struct Biol 202: 229-235

Released	2018-02-14
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Papaver somniferum
Macromolecule	Thebaine 6-O-demethylase (protein)
Unique Ligands	AKG, EDO, NA, NI, PEG, UNX

Explore in 3D

6S0R \| pdb_00006s0r	Download File View File

The crystal structure of kanamycin B dioxygenase (KanJ) from Streptomyces kanamyceticus complex with nickel, sulfate and chloride

Mrugala, B., Porebski, P.J., Niedzialkowska, E., Cymborowski, M.T., Minor, W., Borowski, T.

(2021) FEBS J 288: 1366-1386

Released	2020-07-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Streptomyces kanamyceticus
Macromolecule	Kanamycin B dioxygenase (protein)
Unique Ligands	CL, NI, SO4

Explore in 3D

6S0S \| pdb_00006s0s	Download File View File

The crystal structure of kanamycin B dioxygenase (KanJ) from Streptomyces kanamyceticus in complex with nickel, ribostamycin B and 2-oxoglutarate

Mrugala, B., Porebski, P.J., Niedzialkowska, E., Minor, W., Borowski, T.

(2021) FEBS J 288: 1366-1386

Released	2020-07-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Streptomyces kanamyceticus
Macromolecule	Kanamycin B dioxygenase (protein)
Unique Ligands	AKG, CL, NI, RIO

Explore in 3D

6S0T \| pdb_00006s0t	Download File View File

The crystal structure of kanamycin B dioxygenase (KanJ) from Streptomyces kanamyceticus in complex with nickel, sulfate, soaked with iodide

Mrugala, B., Porebski, P.J., Niedzialkowska, E., Cymborowski, M.T., Minor, W., Borowski, T.

(2021) FEBS J 288: 1366-1386

Released	2020-07-08
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces kanamyceticus
Macromolecule	Kanamycin B dioxygenase (protein)
Unique Ligands	IOD, NI, SO4

Explore in 3D

6S0U \| pdb_00006s0u	Download File View File

The crystal structure of kanamycin B dioxygenase (KanJ) from Streptomyces kanamyceticus in complex with nickel and 2-oxoglutarate

Mrugala, B., Porebski, P.J., Niedzialkowska, E., Minor, W., Borowski, T.

(2021) FEBS J 288: 1366-1386

Released	2020-07-08
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Streptomyces kanamyceticus
Macromolecule	Kanamycin B dioxygenase (protein)
Unique Ligands	AKG, CL, NA, NI, PEG

Explore in 3D

6S0V \| pdb_00006s0v	Download File View File

The crystal structure of kanamycin B dioxygenase (KanJ) from Streptomyces kanamyceticus in complex with nickel, neamine and sulfate

Mrugala, B., Niedzialkowska, E., Minor, W., Borowski, T.

(2021) FEBS J 288: 1366-1386

Released	2020-07-08
Method	X-RAY DIFFRACTION 3 Å
Organisms	Streptomyces kanamyceticus
Macromolecule	Kanamycin B dioxygenase (protein)
Unique Ligands	NI, SO4, XXX

Explore in 3D

6S0W \| pdb_00006s0w	Download File View File

The crystal structure of kanamycin B dioxygenase (KanJ) from Streptomyces kanamyceticus in complex with nickel and kanamycin B sulfate

Mrugala, B., Niedzialkowska, E., Minor, W., Borowski, T.

(2021) FEBS J 288: 1366-1386

Released	2020-07-08
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Streptomyces kanamyceticus
Macromolecule	Kanamycin B dioxygenase (protein)
Unique Ligands	9CS, NI, PEG, SO4

Explore in 3D

6TTM \| pdb_00006ttm	Download File View File

Hyoscyamine 6-hydroxylase in complex with N-oxalylglycine and hyoscyamine

Kluza, A., Kurpiewska, K., Mrugala, B., Porebski, P.J., Niedzialkowska, E., Minor, W., Borowski, T.

(2020) Dalton Trans 49: 4454-4469

Released	2020-03-18
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Datura metel
Macromolecule	Hyoscyamine 6 beta-hydroxylase (protein)
Unique Ligands	EDO, HYO, NI, OGA, PEG, SR, UNX

Explore in 3D

6TTN \| pdb_00006ttn	Download File View File

N-terminally truncated hyoscyamine 6-hydroxylase (tH6H) in complex with N-oxalylglycine and hyoscyamine

Kluza, A., Mrugala, B., Porebski, P.J., Kurpiewska, K., Niedzialkowska, E., Weiss, M.S., Borowski, T.

(2020) Dalton Trans 49: 4454-4469

Released	2020-03-18
Method	X-RAY DIFFRACTION 1.12 Å
Organisms	Datura metel
Macromolecule	Hyoscyamine 6 beta-hydroxylase (protein)
Unique Ligands	EDO, HYO, NA, NI, OGA, SR, UNX

Explore in 3D

6TTO \| pdb_00006tto	Download File View File

N-terminally truncated hyoscyamine 6-hydroxylase (tH6H) in complex with 2-oxoglutarate

Kluza, A., Mrugala, B., Porebski, P.J., Kurpiewska, K., Niedzialkowska, E., Weiss, M.S., Borowski, T.

(2020) Dalton Trans 49: 4454-4469

Released	2020-03-18
Method	X-RAY DIFFRACTION 1.31 Å
Organisms	Datura metel
Macromolecule	Hyoscyamine 6 beta-hydroxylase (protein)
Unique Ligands	AKG, EDO, FMT, NA, NI, SR

1 to 14 of 14 Structures

Page 1 of 1

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4QGL | pdb_00004qgl

Acireductone dioxygenase from Bacillus anthracis with three cadmium ions

4QGM | pdb_00004qgm

Acireductone dioxygenase from Bacillus anthracis with cadmium ion in active center

4QGN | pdb_00004qgn

Human acireductone dioxygenase with iron ion and L-methionine in active center

5O7Y | pdb_00005o7y

Thebaine 6-O-demethylase (T6ODM) from Papaver somniferum in complex with succinate

5O9W | pdb_00005o9w

Thebaine 6-O-demethylase (T6ODM) from Papaver somniferum in complex with 2-oxoglutarate

6S0R | pdb_00006s0r

The crystal structure of kanamycin B dioxygenase (KanJ) from Streptomyces kanamyceticus complex with nickel, sulfate and chloride

6S0S | pdb_00006s0s

The crystal structure of kanamycin B dioxygenase (KanJ) from Streptomyces kanamyceticus in complex with nickel, ribostamycin B and 2-oxoglutarate

6S0T | pdb_00006s0t

The crystal structure of kanamycin B dioxygenase (KanJ) from Streptomyces kanamyceticus in complex with nickel, sulfate, soaked with iodide

6S0U | pdb_00006s0u

The crystal structure of kanamycin B dioxygenase (KanJ) from Streptomyces kanamyceticus in complex with nickel and 2-oxoglutarate

6S0V | pdb_00006s0v

The crystal structure of kanamycin B dioxygenase (KanJ) from Streptomyces kanamyceticus in complex with nickel, neamine and sulfate

6S0W | pdb_00006s0w

The crystal structure of kanamycin B dioxygenase (KanJ) from Streptomyces kanamyceticus in complex with nickel and kanamycin B sulfate

6TTM | pdb_00006ttm

Hyoscyamine 6-hydroxylase in complex with N-oxalylglycine and hyoscyamine

6TTN | pdb_00006ttn

N-terminally truncated hyoscyamine 6-hydroxylase (tH6H) in complex with N-oxalylglycine and hyoscyamine

6TTO | pdb_00006tto

N-terminally truncated hyoscyamine 6-hydroxylase (tH6H) in complex with 2-oxoglutarate

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4QGL | pdb_00004qgl

4QGM | pdb_00004qgm

4QGN | pdb_00004qgn

5O7Y | pdb_00005o7y

5O9W | pdb_00005o9w

6S0R | pdb_00006s0r

6S0S | pdb_00006s0s

6S0T | pdb_00006s0t

6S0U | pdb_00006s0u

6S0V | pdb_00006s0v

6S0W | pdb_00006s0w

6TTM | pdb_00006ttm

6TTN | pdb_00006ttn

6TTO | pdb_00006tto