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1,068,577 Computed Structure Models (CSM)

QUERY: Structure Author = "Brilot, A.F."

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This query matches 22 Structures.

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3J6X	Download File View File

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Koh, C.S., Brilot, A.F., Grigorieff, N., Korostelev, A.A.

(2014) Proc Natl Acad Sci U S A 111: 9139-9144

Released	2014-06-11
Method	ELECTRON MICROSCOPY 6.1 Å
Organisms	Saccharomyces cerevisiae W303 Taura syndrome virus
Macromolecule	Unique protein chains: 75 Unique nucleic acid chains: 5

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3J6Y	Download File View File

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Koh, C.S., Brilot, A.F., Grigorieff, N., Korostelev, A.A.

(2014) Proc Natl Acad Sci U S A 111: 9139-9144

Released	2014-06-11
Method	ELECTRON MICROSCOPY 6.1 Å
Organisms	Saccharomyces cerevisiae W303 Taura syndrome virus
Macromolecule	Unique protein chains: 75 Unique nucleic acid chains: 5

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3J77	Download File View File

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Svidritskiy, E., Brilot, A.F., Koh, C.S., Grigorieff, N., Korostelev, A.A.

(2014) Structure 22: 1210-1218

Released	2014-08-06
Method	ELECTRON MICROSCOPY 6.2 Å
Organisms	Escherichia coli Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 77 Unique nucleic acid chains: 6

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3J78	Download File View File

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Svidritskiy, E., Brilot, A.F., Koh, C.S., Grigorieff, N., Korostelev, A.A.

(2014) Structure 22: 1210-1218

Released	2014-08-06
Method	ELECTRON MICROSCOPY 6.3 Å
Organisms	Escherichia coli Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 77 Unique nucleic acid chains: 6

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4V7C	Download File View File

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)

Brilot, A.F., Korostelev, A.A., Ermolenko, D.N., Grigorieff, N.

(2013) Proc Natl Acad Sci U S A 110: 20994-20999

Released	2014-07-09
Method	ELECTRON MICROSCOPY 7.6 Å
Organisms	Escherichia coli Escherichia coli K-12 Streptomyces
Macromolecule	Unique protein chains: 52 Unique nucleic acid chains: 5
Unique Ligands	ZN

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4V7D	Download File View File

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70StRNAEF-G structure)

Brilot, A.F., Korostelev, A.A., Ermolenko, D.N., Grigorieff, N.

(2013) Proc Natl Acad Sci U S A 110: 20994-20999

Released	2014-07-09
Method	ELECTRON MICROSCOPY 7.6 Å
Organisms	Escherichia coli Escherichia coli K-12 Streptomyces
Macromolecule	Unique protein chains: 54 Unique nucleic acid chains: 5
Unique Ligands	ZN

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5KPS	Download File View File

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Loveland, A.B., Bah, E., Madireddy, R., Zhang, Y., Brilot, A.F., Grigorieff, N., Korostelev, A.A.

(2016) Elife 5:

Released	2016-09-28
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Escherichia coli K-12
Macromolecule	Unique protein chains: 52 Unique nucleic acid chains: 6

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5KPV	Download File View File

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Loveland, A.B., Bah, E., Madireddy, R., Zhang, Y., Brilot, A.F., Grigorieff, N., Korostelev, A.A.

(2016) Elife 5:

Released	2016-09-28
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Escherichia coli K-12
Macromolecule	Unique protein chains: 52 Unique nucleic acid chains: 7

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5KPW	Download File View File

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Loveland, A.B., Bah, E., Madireddy, R., Zhang, Y., Brilot, A.F., Grigorieff, N., Korostelev, A.A.

(2016) Elife 5:

Released	2016-09-28
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Escherichia coli K-12
Macromolecule	Unique protein chains: 52 Unique nucleic acid chains: 7

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5KPX	Download File View File

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Loveland, A.B., Bah, E., Madireddy, R., Zhang, Y., Brilot, A.F., Grigorieff, N., Korostelev, A.A.

(2016) Elife 5:

Released	2016-09-28
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Escherichia coli K-12
Macromolecule	Unique protein chains: 52 Unique nucleic acid chains: 7

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7KKJ	Download File View File

Structure of anti-SARS-CoV-2 Spike nanobody mNb6

Schoof, M.S., Faust, B.F., Saunders, R.A., Sangwan, S., Rezelj, V., Hoppe, N., Boone, M., Billesboelle, C.B., Puchades, C., Azumaya, C.M., Kratochvil, H.T., Zimanyi, M., Desphande, I., Liang, J., Dickinson, S., Nguyen, H.C., Chio, C.M., Merz, G.E., Thompson, M.C., Diwanji, D., Schaefer, K., Anand, A.A., Dobzinski, N., Zha, B.S., Simoneau, C.R., Leon, K., White, K.M., Chio, U.S., Gupta, M., Jin, M., Li, F., Liu, Y., Zhang, K., Bulkley, D., Sun, M., Smith, A.M., Rizo, A.N., Moss, F., Brilot, A.F., Pourmal, S., Trenker, R., Pospiech, T., Gupta, S., Barsi-Rhyne, B., Belyy, V., Barile-Hill, A.W., Nock, S., Liu, Y., Krogan, N.J., Ralston, C.Y., Swaney, D.L., Garcia-Sastre, A., Ott, M., Vignuzzi, M., Walter, P., Manglik, A., QCRG Structural Biology Consortium

(2020) Science 370: 1473-1479

Released	2020-11-25
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	synthetic construct
Macromolecule	Synthetic nanobody mNb6 (protein)
Unique Ligands	CL, SO4

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7KKK	Download File View File

SARS-CoV-2 Spike in complex with neutralizing nanobody Nb6

(2020) Science 370: 1473-1479

Released	2020-11-11
Method	ELECTRON MICROSCOPY 3.03 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	Spike glycoprotein (protein) Synthetic nanobody Nb6 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7KKL	Download File View File

SARS-CoV-2 Spike in complex with neutralizing nanobody mNb6

(2020) Science 370: 1473-1479

Released	2020-11-11
Method	ELECTRON MICROSCOPY 2.85 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	Spike glycoprotein (protein) Synthetic nanobody mNb6 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7M2W	Download File View File

Engineered disulfide cross-linked closed conformation of the Yeast gamma-TuRC(SS)

Brilot, A.F., Lyon, A.S., Zelter, A., Viswanath, S., Maxwell, A., MacCoss, M.J., Muller, E.G., Sali, A., Davis, T.N., Agard, D.A.

(2021) Elife 10:

Released	2021-05-12
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Spindle pole body component 110 (protein) Spindle pole body component SPC97 (protein) Spindle pole body component SPC98 (protein) Tubulin gamma chain (protein)
Unique Ligands	GTP

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7M2X	Download File View File

Open conformation of the Yeast wild-type gamma-TuRC

Brilot, A.F., Lyon, A.S., Zelter, A., Viswanath, S., Maxwell, A., MacCoss, M.J., Muller, E.G., Sali, A., Davis, T.N., Agard, D.A.

(2021) Elife 10:

Released	2021-05-12
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Spindle pole body component 110 (protein) Spindle pole body component SPC97 (protein) Spindle pole body component SPC98 (protein) Tubulin gamma chain (protein)
Unique Ligands	GDP

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7M2Y	Download File View File

Closed conformation of the Yeast wild-type gamma-TuRC

Brilot, A.F., Lyon, A.S., Zelter, A., Viswanath, S., Maxwell, A., MacCoss, M.J., Muller, E.G., Sali, A., Davis, T.N., Agard, D.A.

(2021) Elife 10:

Released	2021-05-12
Method	ELECTRON MICROSCOPY 4.03 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Spindle pole body component 110 (protein) Spindle pole body component SPC97 (protein) Spindle pole body component SPC98 (protein) Tubulin gamma chain (protein)
Unique Ligands	GDP

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7M2Z	Download File View File

Monomeric single-particle reconstruction of the Yeast gamma-TuSC

Brilot, A.F., Lyon, A.S., Zelter, A., Viswanath, S., Maxwell, A., MacCoss, M.J., Muller, E.G., Sali, A., Davis, T.N., Agard, D.A.

(2021) Elife 10:

Released	2021-05-12
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Spindle pole body component SPC97 (protein) Spindle pole body component SPC98 (protein) Tubulin gamma chain (protein)
Unique Ligands	GDP

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7M3P	Download File View File

Xrcc4-Spc110p(164-207) fusion

Brilot, A.F., Lyon, A.S., Zelter, A., Viswanath, S., Maxwell, A., MacCoss, M.J., Muller, E.G., Sali, A., Davis, T.N., Agard, D.A.

(2021) Elife 10:

Released	2021-05-12
Method	X-RAY DIFFRACTION 2.00001856449 Å
Organisms	Homo sapiens Saccharomyces cerevisiae
Macromolecule	Xrcc4-Spc110p(164-207) (protein)

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8DV1	Download File View File

SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to linker variant of affinity matured ACE2 mimetic CVD432

QCRG Structural Biology Consortium, Remesh, S.G., Merz, G.E., Brilot, A.F., Chio, U., Verba, K.A.

(2023) Structure 31: 253

Released	2022-08-31
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2,Immunoglobulin gamma-1 heavy chain fusion,Immunoglobulin gamma-1 heavy chain (protein) Spike glycoprotein (protein)
Unique Ligands	NAG

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8DV2	Download File View File

SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to computationally engineered ACE2 mimetic CVD293

QCRG Structural Biology Consortium, Remesh, S.G., Merz, G.E., Brilot, A.F., Chio, U., Verba, K.A.

(2023) Structure 31: 253

Released	2022-08-31
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Angiotensin-converting enzyme 2,Immunoglobulin gamma-1 heavy chain fusion (protein) Spike glycoprotein (protein)
Unique Ligands	NAG

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8FNE	Download File View File

phiPA3 PhuN Tetramer, p2

Nieweglowska, E.S., Brilot, A.F., Mendez-Moran, M., Kokontis, C., Baek, M., Li, J., Cheng, Y., Baker, D., Bondy-Denomy, J., Agard, D.A.

(2023) Nat Commun 14: 927-927

Released	2023-03-01
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Escherichia coli K-12 Pseudomonas phage PhiPA3
Macromolecule	Maltose/maltodextrin-binding periplasmic protein, PhuN (protein)

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8FV5	Download File View File

Representation of 16-mer phiPA3 PhuN Lattice, p2

Nieweglowska, E.S., Brilot, A.F., Mendez-Moran, M., Kokontis, C., Baek, M., Li, J., Cheng, Y., Baker, D., Bondy-Denomy, J., Agard, D.A.

(2023) Nat Commun 14: 927-927

Released	2023-03-01
Method	ELECTRON MICROSCOPY 4.21 Å
Organisms	Escherichia coli K-12 Pseudomonas phage PhiPA3
Macromolecule	Maltose/maltodextrin-binding periplasmic protein, phiPA3 PhuN (protein)