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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Dodson, E."

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Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Homo sapiens (3)
	Shouchella clausii (3)
	Alcaligenes faecalis (2)
	Campylobacter jejuni (1)
	Clostridioides difficile (1)
	Sus scrofa (1)
	Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920 (1)

Taxonomy

	Bacteria (8)
	Eukaryota (4)

Experimental Method

X-RAY DIFFRACTION (12)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (1)
	2.0 - 2.5 (7)
	2.5 - 3.0 (1)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)

Release Date

	1990 - 1994 (4)
	2005 - 2009 (2)
	2010 - 2014 (5)
	2015 - 2019 (1)

Enzyme Classification Name

Hydrolases (6)

Symmetry Type

	Cyclic (8)
	Asymmetric (5)

SCOP Classification

	Alpha and beta proteins (a/b) (4)
	All alpha proteins (3)
	Small proteins (1)

AllSelected

1 to 12 of 12 Structures

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1HGA \| pdb_00001hga	Download File View File

HIGH RESOLUTION CRYSTAL STRUCTURES AND COMPARISONS OF T STATE DEOXYHAEMOGLOBIN AND TWO LIGANDED T-STATE HAEMOGLOBINS: T(ALPHA-OXY)HAEMOGLOBIN AND T(MET)HAEMOGLOBIN

Liddington, R., Derewenda, Z., Dodson, E., Hubbard, R., Dodson, G.

(1992) J Mol Biology 228: 551-579

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	HEMOGLOBIN (DEOXY) (ALPHA CHAIN) (protein) HEMOGLOBIN (DEOXY) (BETA CHAIN) (protein)
Unique Ligands	HEM

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1HGB \| pdb_00001hgb	Download File View File

HIGH RESOLUTION CRYSTAL STRUCTURES AND COMPARISONS OF T STATE DEOXYHAEMOGLOBIN AND TWO LIGANDED T-STATE HAEMOGLOBINS: T(ALPHA-OXY)HAEMOGLOBIN AND T(MET)HAEMOGLOBIN

Liddington, R., Derewenda, Z., Dodson, E., Hubbard, R., Dodson, G.

(1992) J Mol Biology 228: 551-579

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	HEMOGLOBIN (AQUO MET) (ALPHA CHAIN) (protein) HEMOGLOBIN (AQUO MET) (BETA CHAIN) (protein)
Unique Ligands	HEM

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1HGC \| pdb_00001hgc	Download File View File

HIGH RESOLUTION CRYSTAL STRUCTURES AND COMPARISONS OF T STATE DEOXYHAEMOGLOBIN AND TWO LIGANDED T-STATE HAEMOGLOBINS: T(ALPHA-OXY)HAEMOGLOBIN AND T(MET)HAEMOGLOBIN

Liddington, R., Derewenda, Z., Dodson, E., Hubbard, R., Dodson, G.

(1992) J Mol Biology 228: 551-579

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	HEMOGLOBIN (DEOXY) (BETA CHAIN) (protein) HEMOGLOBIN (OXY) (ALPHA CHAIN) (protein)
Unique Ligands	HEM, OXY

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2V25 \| pdb_00002v25	Download File View File

Structure of the Campylobacter jejuni antigen Peb1A, an aspartate and glutamate receptor with bound aspartate

Muller, A., Dodson, E., del Rocio Leon-Kempis, M., Kelly, D.J., Wilkinson, A.J., Wilson, K.S.

(2007) J Mol Biology 372: 160

Released	2007-06-26
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Campylobacter jejuni
Macromolecule	MAJOR CELL-BINDING FACTOR (protein)
Unique Ligands	ASP, ZN

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2WV7 \| pdb_00002wv7	Download File View File

Intracellular subtilisin precursor from B. clausii

Vevodova, J., Gamble, M., Ariza, A., Dodson, E., Jones, D.D., Wilson, K.S.

(2010) Structure 18: 744

Released	2010-09-08
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Shouchella clausii
Macromolecule	INTRACELLULAR SUBTILISIN PROTEASE (protein)
Unique Ligands	NA

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2WWT \| pdb_00002wwt	Download File View File

Intracellular subtilisin precursor from B. clausii

Vevodova, J., Gamble, M., Ariza, A., Dodson, E., Jones, D.D., Wilson, K.S.

(2010) Structure 18: 744

Released	2010-09-08
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Shouchella clausii
Macromolecule	INTRACELLULAR SUBTILISIN PROTEASE (protein)
Unique Ligands	NA

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2X8J \| pdb_00002x8j	Download File View File

Intracellular subtilisin precursor from B. clausii

Vedodova, J., Gamble, M., Ariza, A., Dodson, E., Jones, D.D., Wilson, K.S.

(2010) Structure 18: 744-755

Released	2010-08-11
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Shouchella clausii
Macromolecule	INTRACELLULAR SUBTILISIN PROTEASE (protein)
Unique Ligands	1PE, GOL, NA

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3K3W \| pdb_00003k3w	Download File View File

Thermostable Penicillin G acylase from Alcaligenes faecalis in orthorhombic form

Varshney, N.K., Kumar, R.S., Ignatova, Z., Dodson, E., Suresh, C.G.

(2012) Acta Crystallogr Sect F Struct Biol Cryst Commun 68: 273-277

Released	2009-11-10
Method	X-RAY DIFFRACTION 3.31 Å
Organisms	Alcaligenes faecalis
Macromolecule	Penicillin G acylase (protein)
Unique Ligands	CA

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3ML0 \| pdb_00003ml0	Download File View File

Thermostable Penicillin G acylase from Alcaligenes faecalis in tetragonal form

Varshney, N.K., Kumar, R.S., Ignatova, Z., Dodson, E., Suresh, C.G.

(2012) Acta Crystallogr Sect F Struct Biol Cryst Commun 68: 273-277

Released	2010-05-05
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Alcaligenes faecalis
Macromolecule	Penicillin G acylase, alpha subunit (protein) Penicillin G acylase, beta subunit (protein)
Unique Ligands	CA

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4AXV \| pdb_00004axv	Download File View File

Biochemical and structural characterization of the MpaA amidase as part of a conserved scavenging pathway for peptidoglycan derived peptides in gamma-proteobacteria

Maqbool, A., Herve, M., Mengin-Lecreulx, D., Dodson, E., Wilkinson, A.J., Thomas, G.H.

(2012) Biochem J 448: 329

Released	2012-09-26
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Vibrio campbellii CAIM 519 = NBRC 15631 = ATCC 25920
Macromolecule	MPAA (protein)
Unique Ligands	EDO, ZN

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6I3G \| pdb_00006i3g	Download File View File

Crystal structure of a putative peptide binding protein AppA from Clostridium difficile

Hughes, A.M., Wilkinson, A., Dodson, E.

(2019) Acta Crystallogr F Struct Biol Commun 75: 246-253

Released	2019-04-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Clostridioides difficile
Macromolecule	ABC transporter, substrate-binding protein, family 5 (protein)
Unique Ligands	IOD, SO4

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7INS \| pdb_00007ins	Download File View File

STRUCTURE OF PORCINE INSULIN COCRYSTALLIZED WITH CLUPEINE Z

Balschmidt, P., Hansen, F.B., Dodson, E., Dodson, G., Korber, F.

(1991) Acta Crystallogr B 47: 975-986

Released	1994-01-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sus scrofa
Macromolecule	GENERAL PROTAMINE CHAIN (protein) INSULIN (CHAIN A) (protein) INSULIN (CHAIN B) (protein)
Unique Ligands	CRS, UNL, ZN

1 to 12 of 12 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1HGA | pdb_00001hga

HIGH RESOLUTION CRYSTAL STRUCTURES AND COMPARISONS OF T STATE DEOXYHAEMOGLOBIN AND TWO LIGANDED T-STATE HAEMOGLOBINS: T(ALPHA-OXY)HAEMOGLOBIN AND T(MET)HAEMOGLOBIN

1HGB | pdb_00001hgb

HIGH RESOLUTION CRYSTAL STRUCTURES AND COMPARISONS OF T STATE DEOXYHAEMOGLOBIN AND TWO LIGANDED T-STATE HAEMOGLOBINS: T(ALPHA-OXY)HAEMOGLOBIN AND T(MET)HAEMOGLOBIN

1HGC | pdb_00001hgc

HIGH RESOLUTION CRYSTAL STRUCTURES AND COMPARISONS OF T STATE DEOXYHAEMOGLOBIN AND TWO LIGANDED T-STATE HAEMOGLOBINS: T(ALPHA-OXY)HAEMOGLOBIN AND T(MET)HAEMOGLOBIN

2V25 | pdb_00002v25

Structure of the Campylobacter jejuni antigen Peb1A, an aspartate and glutamate receptor with bound aspartate

2WV7 | pdb_00002wv7

Intracellular subtilisin precursor from B. clausii

2WWT | pdb_00002wwt

Intracellular subtilisin precursor from B. clausii

2X8J | pdb_00002x8j

Intracellular subtilisin precursor from B. clausii

3K3W | pdb_00003k3w

Thermostable Penicillin G acylase from Alcaligenes faecalis in orthorhombic form

3ML0 | pdb_00003ml0

Thermostable Penicillin G acylase from Alcaligenes faecalis in tetragonal form

4AXV | pdb_00004axv

Biochemical and structural characterization of the MpaA amidase as part of a conserved scavenging pathway for peptidoglycan derived peptides in gamma-proteobacteria

6I3G | pdb_00006i3g

Crystal structure of a putative peptide binding protein AppA from Clostridium difficile

7INS | pdb_00007ins

STRUCTURE OF PORCINE INSULIN COCRYSTALLIZED WITH CLUPEINE Z

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1HGA | pdb_00001hga

1HGB | pdb_00001hgb

1HGC | pdb_00001hgc

2V25 | pdb_00002v25

2WV7 | pdb_00002wv7

2WWT | pdb_00002wwt

2X8J | pdb_00002x8j

3K3W | pdb_00003k3w

3ML0 | pdb_00003ml0

4AXV | pdb_00004axv

6I3G | pdb_00006i3g

7INS | pdb_00007ins