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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Du, D."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Cystovirus phi6 (11)
	synthetic construct (5)
	Neurospora crassa (2)
	Thermothielavioides terrestris (1)

Taxonomy

	Riboviria (11)
	other sequences (5)
	Eukaryota (3)

Experimental Method

X-RAY DIFFRACTION (14)

Polymer Entity Type

	Protein (14)
	RNA (5)
	DNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (6)
	2.5 - 3.0 (2)
	3.0 - 3.5 (4)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (11)
	2005 - 2009 (2)
	2015 - 2019 (1)

Enzyme Classification Name

Transferases (14)

Symmetry Type

	Asymmetric (11)
	Cyclic (3)

SCOP Classification

Multi-domain proteins (alpha and beta) (11)

AllSelected

1 to 14 of 14 Structures

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1HHS \| pdb_00001hhs	Download File View File

RNA dependent RNA polymerase from dsRNA bacteriophage phi6

Grimes, J.M., Butcher, S.J., Makeyev, E.V., Bamford, D.H., Stuart, D.I.

(2001) Nature 410: 235

Released	2001-03-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Cystovirus phi6
Macromolecule	RNA-DIRECTED RNA POLYMERASE (protein)
Unique Ligands	MN

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1HHT \| pdb_00001hht	Download File View File

RNA dependent RNA polymerase from dsRNA bacteriophage phi6 plus template

Grimes, J.M., Butcher, S.J., Makeyev, E.V., Bamford, D.H., Stuart, D.I.

(2001) Nature 410: 235

Released	2001-03-27
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Cystovirus phi6
Macromolecule	P2 PROTEIN (protein) DNA (5'-(TPTPTPCP*C)-3') (nucleic acid)
Unique Ligands	MN

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1HI0 \| pdb_00001hi0	Download File View File

RNA dependent RNA polymerase from dsRNA bacteriophage phi6 plus initiation complex

Grimes, J.M., Butcher, S.J., Makeyev, E.V., Bamford, D.H., Stuart, D.I.

(2001) Nature 410: 235

Released	2001-03-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Cystovirus phi6
Macromolecule	P2 PROTEIN (protein) DNA (5'-(TPTPTPCP*C)-3') (nucleic acid)
Unique Ligands	GTP, MG, MN

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1HI1 \| pdb_00001hi1	Download File View File

RNA dependent RNA polymerase from dsRNA bacteriophage phi6 plus bound NTP

Grimes, J.M., Butcher, S.J., Makeyev, E.V., Bamford, D.H., Stuart, D.I.

(2001) Nature 410: 235

Released	2001-03-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Cystovirus phi6
Macromolecule	P2 PROTEIN (protein)
Unique Ligands	ATP

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1HI8 \| pdb_00001hi8	Download File View File

RNA dependent RNA polymerase from dsRNA bacteriophage phi6

Grimes, J.M., Butcher, S.J., Makeyev, E.V., Bamford, D.H., Stuart, D.I.

(2001) Nature 410: 235

Released	2001-03-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Cystovirus phi6
Macromolecule	P2 PROTEIN (protein)
Unique Ligands	MG

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1UVI \| pdb_00001uvi	Download File View File

The structural basis for RNA specificity and Ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 with 6nt RNA

Salgado, P.S., Makeyev, E.V., Butcher, S., Bamford, D., Stuart, D.I., Grimes, J.M.

(2004) Structure 12: 307-316

Released	2004-02-19
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Cystovirus phi6 synthetic construct
Macromolecule	RNA-directed RNA polymerase (protein) 5'-R(UPUPUPUPCPCP)-3' (nucleic acid)
Unique Ligands	MN

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1UVJ \| pdb_00001uvj	Download File View File

The structural basis for RNA specificity and Ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 with 7nt RNA

Salgado, P.S., Makeyev, E.V., Butcher, S., Bamford, D., Stuart, D.I., Grimes, J.M.

(2004) Structure 12: 307-316

Released	2004-02-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Cystovirus phi6 synthetic construct
Macromolecule	RNA-directed RNA polymerase (protein) 5'-R(UPUPCPCP)-3' (nucleic acid)
Unique Ligands	MN

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1UVK \| pdb_00001uvk	Download File View File

The structural basis for RNA specificity and Ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 dead-end complex

Salgado, P.S., Makeyev, E.V., Butcher, S., Bamford, D., Stuart, D.I., Grimes, J.M.

(2004) Structure 12: 307-316

Released	2004-02-19
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Cystovirus phi6
Macromolecule	RNA-directed RNA polymerase (protein)
Unique Ligands	G, GTP, MG, MN, POP

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1UVL \| pdb_00001uvl	Download File View File

The structural basis for RNA specificity and Ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 with 5nt RNA. Conformation B

Salgado, P.S., Makeyev, E.V., Butcher, S., Bamford, D., Stuart, D.I., Grimes, J.M.

(2004) Structure 12: 307-316

Released	2004-02-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Cystovirus phi6 synthetic construct
Macromolecule	RNA-directed RNA polymerase (protein) 5'-R(UPUPUPCP*CP)-3' (nucleic acid)
Unique Ligands	MN

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1UVM \| pdb_00001uvm	Download File View File

The structural basis for RNA specificity and Ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 with 5NT RNA conformation A

Salgado, P.S., Makeyev, E.V., Butcher, S., Bamford, D., Stuart, D.I., Grimes, J.M.

(2004) Structure 12: 307-316

Released	2004-02-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Cystovirus phi6 synthetic construct
Macromolecule	RNA-directed RNA polymerase (protein) 5'-R(UPUPUPCP*CP)-3' (nucleic acid)
Unique Ligands	MN

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1UVN \| pdb_00001uvn	Download File View File

The structural basis for RNA specificity and Ca2 inhibition of an RNA-dependent RNA polymerase phi6p2 ca2+ inhibition complex

Salgado, P.S., Makeyev, E.V., Butcher, S., Bamford, D., Stuart, D.I., Grimes, J.M.

(2004) Structure 12: 307-316

Released	2004-02-26
Method	X-RAY DIFFRACTION 3 Å
Organisms	Cystovirus phi6 synthetic construct
Macromolecule	RNA-directed RNA polymerase (protein) 5'-R(UPUPUPUPCPCP)-3' (nucleic acid)
Unique Ligands	CA, GTP, MN