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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Fromme, J.C."

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Search Summary

This query matches 54 Structures.

Refinements

Structure Determination Methodology

experimental (54)

Scientific Name of Source Organism

	Geobacillus stearothermophilus (13)
	Saccharomyces cerevisiae (11)
	Bartonella henselae (8)
	synthetic construct (8)
	Homo sapiens (7)
	Saccharomyces cerevisiae S288C (6)
	Mus musculus (2)
	Pseudomonas aeruginosa (2)
	Saccharopolyspora erythraea (2)
	Severe acute respiratory syndrome coronavirus 2 (2)

More...

Taxonomy

	Bacteria (29)
	Eukaryota (27)
	other sequences (8)
	Riboviria (2)

Experimental Method

	X-RAY DIFFRACTION (30)
	ELECTRON MICROSCOPY (24)

Polymer Entity Type

	Protein (54)
	DNA (18)
	RNA (8)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (8)
	2.0 - 2.5 (14)
	2.5 - 3.0 (8)
	3.0 - 3.5 (11)
	3.5 - 4.0 (8)
	4.0 - 4.5 (3)
	> 4.5 (1)

Release Date

	2000 - 2004 (17)
	2005 - 2009 (1)
	2010 - 2014 (3)
	2015 - 2019 (4)
	2020 - 2024 (29)

Enzyme Classification Name

	Hydrolases (24)
	Lyases (10)
	Transferases (3)

Membrane Protein Annotation

mpstruc (2)

Symmetry Type

	Asymmetric (33)
	Cyclic (13)
	Dihedral (11)

SCOP Classification

	All alpha proteins (17)
	Artifacts (8)
	All beta proteins (7)
	Alpha and beta proteins (a+b) (7)
	Small proteins (7)
	Alpha and beta proteins (a/b) (2)

AllSelected

1 to 25 of 54 Structures

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1HU0	Download File View File

CRYSTAL STRUCTURE OF AN HOGG1-DNA BOROHYDRIDE TRAPPED INTERMEDIATE COMPLEX

Fromme, J.C., Bruner, S.D., Yang, W., Karplus, M., Verdine, G.L.

(2003) Nat Struct Biol 10: 204-211

Released	2003-02-25
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	8-OXOGUANINE DNA GLYCOSYLASE 1 (protein) 5'-D(GPCPGPTPCPCPAP(PED)PGPTPCPTPAPCPC)-3' (nucleic acid) 5'-D(GPGPTPAPGPAPCPCPTPGPGPAPCPGPC)-3' (nucleic acid)
Unique Ligands	CA, OXG

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1L1T	Download File View File

MutM (Fpg) Bound to Abasic-Site Containing DNA

Fromme, J.C., Verdine, G.L.

(2002) Nat Struct Biol 9: 544-552

Released	2002-06-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	MutM (protein) 5'-D(APGGPTPAPGPAPCPCPTPGPGPAPCPGPC)-3' (nucleic acid) 5'-D(TPGPCGPTPCPCPAP(HPD)PGPTPCPTPAPCPC)-3' (nucleic acid)
Unique Ligands	ZN

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1L1Z	Download File View File

MutM (Fpg) Covalent-DNA Intermediate

Fromme, J.C., Verdine, G.L.

(2002) Nat Struct Biol 9: 544-552

Released	2002-06-14
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	MutM (protein) 5'-D(APGGPTPAPGPAPCPCPTPGPGPAPCPGPC)-3' (nucleic acid) 5'-D(TPGPCGPTPCPCPAP(PED)PGPTPCPTPAPCPC)-3' (nucleic acid)
Unique Ligands	ZN

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1L2B	Download File View File

MutM (Fpg) DNA End-Product Structure

Fromme, J.C., Verdine, G.L.

(2002) Nat Struct Biol 9: 544-552

Released	2002-06-14
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	MutM (protein) 5'-D(APGPGPTPAPGPAPCPCPTPGPGPAPCPGPC)-3' (nucleic acid) 5'-D(TPGPCPGPTPCPC(AD2))-3' (nucleic acid) 5'-D(PGPTPCPTPAPCP*C)-3' (nucleic acid)
Unique Ligands	ZN

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1L2C	Download File View File

MutM (Fpg)-DNA Estranged Thymine Mismatch Recognition Complex

Fromme, J.C., Verdine, G.L.

(2002) Nat Struct Biol 9: 544-552

Released	2002-06-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	MutM (protein) 5'-D(APGGPTPAPGPAPCPTPTPGPGPAPCPGPC)-3' (nucleic acid) 5'-D(TPGPCGPTPCPCPAP(HPD)PGPTPCPTPAPCPC)-3' (nucleic acid)
Unique Ligands	ZN

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1L2D	Download File View File

MutM (Fpg)-DNA Estranged Guanine Mismatch Recognition Complex

Fromme, J.C., Verdine, G.L.

(2002) Nat Struct Biol 9: 544-552

Released	2002-06-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	MutM (protein) 5'-D(APGGPTPAPGPAPCPGPTPGPGPAPCPGPC)-3' (nucleic acid) 5'-D(TPGPCGPTPCPCPAP(HPD)PGPTPCPTPAPCPC)-3' (nucleic acid)
Unique Ligands	ZN

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1LWV	Download File View File

Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-aminoguanine

Fromme, J.C., Bruner, S.D., Yang, W., Karplus, M., Verdine, G.L.

(2003) Nat Struct Biol 10: 204-211

Released	2003-02-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	8-OXOGUANINE DNA GLYCOSYLASE (protein) 5'-D(GPCPGPTPCPCPAP(PED)PGPTPCPTPAPCPC)-3' (nucleic acid) 5'-D(GPGPTPAPGPAPCPCPTPGPGPAPCPGPC)-3' (nucleic acid)
Unique Ligands	ANG, CA

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1LWW	Download File View File

Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-bromoguanine

Fromme, J.C., Bruner, S.D., Yang, W., Karplus, M., Verdine, G.L.

(2003) Nat Struct Biol 10: 204-211

Released	2003-02-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	8-OXOGUANINE DNA GLYCOSYLASE (protein) 5'-D(GPCPGPTPCPCPAP(PED)PGPTPCPTPAPCPC)-3' (nucleic acid) 5'-D(GPGPTPAPGPAPCPCPTPGPGPAPCPGPC)-3' (nucleic acid)
Unique Ligands	BRG, CA

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1LWY	Download File View File

hOgg1 Borohydride-Trapped Intermediate without 8-oxoguanine

Fromme, J.C., Bruner, S.D., Yang, W., Karplus, M., Verdine, G.L.

(2003) Nat Struct Biol 10: 204-211

Released	2003-02-25
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Homo sapiens
Macromolecule	8-OXOGUANINE DNA GLYCOSYLASE (protein) 5'-D(GPCPGPTPCPCPAP(PED)PGPTPCPTPAPCPC)-3' (nucleic acid) 5'-D(GPGPTPAPGPAPCPCPTPGPGPAPCPGPC)-3' (nucleic acid)

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1MQ0	Download File View File

Crystal Structure of Human Cytidine Deaminase

Chung, S.J., Fromme, J.C., Verdine, G.L.

(2005) J Med Chem 48: 658-660

Released	2003-11-04
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Cytidine Deaminase (protein)
Unique Ligands	BRD, ZN

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1ORN	Download File View File

Structure of a Trapped Endonuclease III-DNA Covalent Intermediate: Estranged-Guanine Complex

Fromme, J.C., Verdine, G.L.

(2003) EMBO J 22: 3461-3471

Released	2003-07-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Endonuclease III (protein) 5'-D(APAPGPAPCPGPTPGPGPAPC)-3' (nucleic acid) 5'-D(TGPTPCPCPAP(PED)PGPTPCPT)-3' (nucleic acid)
Unique Ligands	NA, SF4, TRS

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1ORP	Download File View File

Structure of a Trapped Endonuclease III-DNA Covalent Intermediate: Estranged-Adenine Complex

Fromme, J.C., Verdine, G.L.

(2003) EMBO J 22: 3461-3471

Released	2003-07-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Endonuclease III (protein) 5'-D(APAPGPAPCPAPTPGPGPAPC)-3' (nucleic acid) 5'-D(GPTPCPCPAP(PED)PGPTPCP*T)-3' (nucleic acid)
Unique Ligands	NA, SF4

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1P59	Download File View File

Structure of a non-covalent Endonuclease III-DNA Complex

Fromme, J.C., Verdine, G.L.

(2003) EMBO J 22: 3461-3471

Released	2003-07-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Endonuclease III (protein) 5'-D(APAPGPAPCPGP(5IU)PGPGPAPC)-3' (nucleic acid) 5'-D(TPGP(5IU)PCPCPAP(3DR)PGP(5IU)PCP*T)-3' (nucleic acid)
Unique Ligands	NA, SF4

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1R2Y	Download File View File

MutM (Fpg) bound to 8-oxoguanine (oxoG) containing DNA

Fromme, J.C., Verdine, G.L.

(2003) J Biol Chem 278: 51543-51548

Released	2003-10-14
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	MutM (protein) 5'-D(APGPGPTPAPGPAPCPCPTPGPGPAPCPGPC)-3' (nucleic acid) 5'-D(TPGPCPGPTPCPCPAP(8OG)PGPTPCPTPAPCPC)-3' (nucleic acid)
Unique Ligands	ZN

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1R2Z	Download File View File

MutM (Fpg) bound to 5,6-dihydrouracil (DHU) containing DNA

Fromme, J.C., Verdine, G.L.

(2003) J Biol Chem 278: 51543-51548

Released	2003-10-14
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	MutM (protein) 5'-D(APGPGPTPAPGPAPCPCPTPGPGPAPCPGPC)-3' (nucleic acid) 5'-D(TPGPCPGPTPCPCPAP(DHU)PGPTPCPTPAPCPC)-3' (nucleic acid)
Unique Ligands	ZN

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1RRQ	Download File View File

MutY adenine glycosylase in complex with DNA containing an A:oxoG pair

Fromme, J.C., Banerjee, A., Huang, S.J., Verdine, G.L.

(2004) Nature 427: 652-656

Released	2004-02-17
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	MutY (protein) 5'-D(TPGPTPCPCPAPAPGPTPCPT)-3' (nucleic acid) 5'-D(APAPGPAPCP(8OG)PTPGPGPAP*C)-3' (nucleic acid)
Unique Ligands	CA, SF4

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1RRS	Download File View File

MutY adenine glycosylase in complex with DNA containing an abasic site

Fromme, J.C., Banerjee, A., Huang, S.J., Verdine, G.L.

(2004) Nature 427: 652-656

Released	2004-02-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	MutY (protein) 5'-D(APAPGPAPCP(8OG)PTPGPGPAPC)-3' (nucleic acid) 5'-D(TPGPTPCPCPAP(HPD)PGPTPCPT)-3' (nucleic acid)
Unique Ligands	CA, SF4

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1VRL	Download File View File

MutY adenine glycosylase in complex with DNA and soaked adenine free base

Fromme, J.C., Banerjee, A., Huang, S.J., Verdine, G.L.

(2004) Nature 427: 652-656

Released	2005-03-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	MutY (protein) 5'-D(APAPGPAPCP(8OG)PTPGPGPAPC)-3' (nucleic acid) 5'-D(TPGPTPCPCPAP(HPD)PGPTPCPT)-3' (nucleic acid)
Unique Ligands	ADE, CA, SF4

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4IN3	Download File View File

Crystal Structure of the Chs5-Bch1 Exomer Cargo Adaptor Complex

Richardson, B.C., Fromme, J.C.

(2013) Structure 21: 486-492

Released	2013-03-06
Method	X-RAY DIFFRACTION 2.936 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Chitin biosynthesis protein CHS5 (protein) Protein BCH1 (protein)

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4Q66	Download File View File

Structure of Exomer bound to Arf1.

Paczkowski, J.E., Fromme, J.C.

(2014) Dev Cell 30: 610-624

Released	2014-09-17
Method	X-RAY DIFFRACTION 3.354 Å
Organisms	Saccharomyces cerevisiae R008 Saccharomyces cerevisiae S288C
Macromolecule	ADP-ribosylation factor 1 (protein) Chs5p (protein) Protein BCH1 (protein)
Unique Ligands	GNP, MG

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4WJW	Download File View File

Crystal Structure of the Chs5-Chs6 Exomer Cargo Adaptor Complex Bound to portion of Chs3

Weiskoff, A.M., Fromme, J.C.

(2014) Front Cell Dev Biol 2: 47-47

Released	2014-10-15
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae S288C
Macromolecule	CHITIN SYNTHASE 3 (protein) Chitin biosynthesis protein CHS5 (protein) Chitin biosynthesis protein CHS6 (protein)

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4YG8	Download File View File

CRYSTAL STRUCTURE OF THE CHS5-CHS6 EXOMER CARGO ADAPTOR COMPLEX

Paczkowski, J.E., Richardson, B.C., Strassner, A.M., Fromme, J.C.

(2012) EMBO J 31: 4191-4203

Released	2015-03-11
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Chitin biosynthesis protein CHS5 (protein) Chitin biosynthesis protein CHS6 (protein)
Unique Ligands	EPE, GOL

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5FD7	Download File View File

X-ray Crystal Structure of ESCRT-III Snf7 core domain (conformation A)

Tang, S., Henne, W.M., Borbat, P.P., Buchkovich, N.J., Freed, J.H., Mao, Y., Fromme, J.C., Emr, S.D.

(2015) Elife 4:

Released	2015-12-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Vacuolar-sorting protein SNF7 (protein)

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5FD9	Download File View File

X-ray Crystal Structure of ESCRT-III Snf7 core domain (conformation B)

Tang, S., Henne, W.M., Borbat, P.P., Buchkovich, N.J., Freed, J.H., Mao, Y., Fromme, J.C., Emr, S.D.

(2015) Elife 4:

Released	2015-12-30
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Vacuolar-sorting protein SNF7 (protein)

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5HAS	Download File View File

Crystal structure of the N-terminal DCB-HUS domain of T. terrestris Sec7

Richardson, B.C., Fromme, J.C.

(2016) Elife 5:

Released	2016-01-27
Method	X-RAY DIFFRACTION 2.653 Å
Organisms	Thermothielavioides terrestris
Macromolecule	Sec7 (protein)

1 to 25 of 54 Structures

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