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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Ishida, H."

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Search Summary

This query matches 57 Structures.

Refinements

Structure Determination Methodology

experimental (57)

Scientific Name of Source Organism

	Homo sapiens (22)
	Glycine max (7)
	Mus musculus (4)
	Arabidopsis thaliana (3)
	Oryza sativa Japonica Group (3)
	Saccharomyces cerevisiae (3)
	Aspergillus oryzae RIB40 (2)
	Bacillus sp. KSM-635 (2)
	Clostridium tetani (2)
	Pyrococcus horikoshii (2)

More...

Taxonomy

	Eukaryota (46)
	Bacteria (9)
	Archaea (2)
	other sequences (2)

Experimental Method

	X-RAY DIFFRACTION (30)
	SOLUTION NMR (24)
	ELECTRON MICROSCOPY (3)

Polymer Entity Type

	Protein (57)
	DNA (2)

Refinement Resolution (Å)

	0.5 - 1.0 (5)
	1.0 - 1.5 (5)
	1.5 - 2.0 (7)
	2.0 - 2.5 (8)
	2.5 - 3.0 (4)
	3.0 - 3.5 (3)
	4.0 - 4.5 (1)

Release Date

	2000 - 2004 (10)
	2005 - 2009 (8)
	2010 - 2014 (12)
	2015 - 2019 (23)
	2020 - 2024 (4)

Enzyme Classification Name

	Hydrolases (6)
	Lyases (3)
	Isomerases (2)
	Transferases (2)
	Translocases (2)

Membrane Protein Annotation

	MemProtMD (3)
	OPM (3)
	PDBTM (3)
	mpstruc (2)

Symmetry Type

	Asymmetric (45)
	Dihedral (7)
	Cyclic (5)

SCOP Classification

	Alpha and beta proteins (a+b) (6)
	All beta proteins (15)
	Alpha and beta proteins (a/b) (7)
	All alpha proteins (14)
	Artifacts (8)

AllSelected

1 to 25 of 57 Structures

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1F54	Download File View File

SOLUTION STRUCTURE OF THE APO N-TERMINAL DOMAIN OF YEAST CALMODULIN

Ishida, H., Takahashi, K., Nakashima, K., Kumaki, Y., Nakata, M., Hikichi, K., Yazawa, M.

(2000) Biochemistry 39: 13660-13668

Released	2003-07-15
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	CALMODULIN (protein)

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1F55	Download File View File

SOLUTION STRUCTURE OF THE CALCIUM BOUND N-TERMINAL DOMAIN OF YEAST CALMODULIN

Ishida, H., Takahashi, K., Nakashima, K., Kumaki, Y., Nakata, M., Hikichi, K., Yazawa, M.

(2000) Biochemistry 39: 13660-13668

Released	2003-07-15
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	CALMODULIN (protein)
Unique Ligands	CA

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1FV2	Download File View File

The Hc fragment of tetanus toxin complexed with an analogue of its ganglioside receptor GT1B

Fotinou, C., Emsley, P., Black, I., Ando, H., Ishida, H., Kiso, M., Sinha, K.A., Fairweather, N.F., Isaacs, N.W.

(2001) J Biol Chem 276: 32274-32281

Released	2001-09-05
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Clostridium tetani
Macromolecule	TETANUS TOXIN HEAVY CHAIN (protein)
Unique Ligands	CEQ, PO4
Unique branched monosaccharides	BGC, GAL, NGA, SIA, SLB

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1FV3	Download File View File

THE HC FRAGMENT OF TETANUS TOXIN COMPLEXED WITH AN ANALOGUE OF ITS GANGLIOSIDE RECEPTOR GT1B

Fotinou, C., Emsley, P., Black, I., Ando, H., Ishida, H., Kiso, M., Sinha, K.A., Fairweather, N.F., Isaacs, N.W.

(2001) J Biol Chem 276: 32274-32281

Released	2001-09-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Clostridium tetani
Macromolecule	TETANUS TOXIN HEAVY CHAIN (protein)
Unique Ligands	CEQ, PO4
Unique branched monosaccharides	BGC, GAL, NGA, SIA, SLB

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1G01	Download File View File

ALKALINE CELLULASE K CATALYTIC DOMAIN

Shirai, T., Ishida, H., Noda, J., Yamane, T., Ozaki, K., Hakamada, Y., Ito, S.

(2001) J Mol Biol 310: 1079-1087

Released	2001-08-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus sp. KSM-635
Macromolecule	ENDOGLUCANASE (protein)
Unique Ligands	ACY, CD

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1G0C	Download File View File

ALKALINE CELLULASE K CATALYTIC DOMAIN-CELLOBIOSE COMPLEX

Shirai, T., Ishida, H., Noda, J., Yamane, T., Ozaki, K., Hakamada, Y., Ito, S.

(2001) J Mol Biol 310: 1079-1087

Released	2001-08-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus sp. KSM-635
Macromolecule	ENDOGLUCANASE (protein)
Unique Ligands	ACY, CD
Unique branched monosaccharides	BGC

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1LK5	Download File View File

Structure of the D-Ribose-5-Phosphate Isomerase from Pyrococcus horikoshii

Ishikawa, K., Matsui, I., Payan, F., Cambillau, C., Ishida, H., Kawarabayasi, Y., Kikuchi, H., Roussel, A.

(2002) Structure 10: 877-886

Released	2002-07-03
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Pyrococcus horikoshii
Macromolecule	D-Ribose-5-Phosphate Isomerase (protein)
Unique Ligands	CL, NA

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1LK7	Download File View File

Structure of D-Ribose-5-Phosphate Isomerase from in complex with phospho-erythronic acid

Ishikawa, K., Matsui, I., Payan, F., Cambillau, C., Ishida, H., Kawarabayasi, Y., Kikuchi, H., Roussel, A.

(2002) Structure 10: 877-886

Released	2002-07-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrococcus horikoshii
Macromolecule	D-Ribose-5-Phosphate Isomerase (protein)
Unique Ligands	CL, DER, NA

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1LKJ	Download File View File

NMR Structure of Apo Calmodulin from Yeast Saccharomyces cerevisiae

Ishida, H., Nakashima, K., Kumaki, Y., Nakata, M., Hikichi, K., Yazawa, M.

(2002) Biochemistry 41: 15536-15542

Released	2003-04-29
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	Calmodulin (protein)

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1WDD	Download File View File

Crystal Structure of Activated Rice Rubisco Complexed with 2-Carboxyarabinitol-1,5-bisphosphate

Mizohata, E., Matsumura, H., Ueno, T., Ishida, H., Inoue, T., Makino, A., Mae, T., Kai, Y.

(2012) J Mol Biol 422: 75-86

Released	2004-11-13
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Oryza sativa Japonica Group
Macromolecule	Ribulose bisphosphate carboxylase large chain (protein) Ribulose bisphosphate carboxylase small chain C (protein)
Unique Ligands	CAP, GOL, MG

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2JV9	Download File View File

The Solution Structure of Calponin Homology Domain from Smoothelin-like 1

Ishida, H., Vogel, H.J., MacDonald, J.A.

(2008) J Biol Chem 283: 20569-20578

Released	2008-05-27
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	Smoothelin-like 1 (protein)

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2K3S	Download File View File

HADDOCK-derived structure of the CH-domain of the smoothelin-like 1 complexed with the C-domain of apocalmodulin

Ishida, H., Borman, M.A., Ostrander, J., Vogel, H.J., MacDonald, J.A.

(2008) J Biol Chem 283: 20569-20578

Released	2008-05-27
Method	SOLUTION NMR
Organisms	Mus musculus Xenopus laevis
Macromolecule	Calmodulin (protein) Smoothelin-like protein 1 (protein)

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2KN2	Download File View File

Solution structure of the C-terminal domain of soybean calmodulin isoform 4 fused with the calmodulin-binding domain of NtMKP1

Ishida, H., Rainaldi, M., Vogel, H.J.

(2009) J Biol Chem 284: 28292-28305

Released	2009-08-25
Method	SOLUTION NMR
Organisms	Glycine max
Macromolecule	Calmodulin (protein)
Unique Ligands	CA

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2KSZ	Download File View File

The solution structure of the Magnesium bound soybean calmodulin isoform 4 N-domain

Huang, H., Ishida, H., Vogel, H.J.

(2010) Protein Sci 19: 475-485

Released	2010-03-09
Method	SOLUTION NMR
Organisms	Glycine max
Macromolecule	Putative uncharacterized protein (protein)
Unique Ligands	MG

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2L1W	Download File View File

The solution structure of soybean calmodulin isoform 4 complexed with the vacuolar calcium ATPase BCA1 peptide

Ishida, H., Vogel, H.J.

To be published

Released	2010-09-29
Method	SOLUTION NMR
Organisms	Glycine max
Macromolecule	Calmodulin (protein) vacuolar calcium ATPase BCA1 peptide (protein)
Unique Ligands	CA

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2L7L	Download File View File

Solution structure of Ca2+/calmodulin complexed with a peptide representing the calmodulin-binding domain of calmodulin kinase I

Gifford, J.L., Ishida, H., Vogel, H.J.

(2011) J Biomol NMR 50: 71-81

Released	2011-05-18
Method	SOLUTION NMR
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Calcium/calmodulin-dependent protein kinase type 1 (protein) Calmodulin (protein)
Unique Ligands	CA

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2LGF	Download File View File

Solution structure of Ca2+/calmodulin complexed with a peptide representing the calmodulin-binding domain of L-selectin

Gifford, J.L., Ishida, H., Vogel, H.J.

(2012) J Biol Chem 287: 26513-26527

Released	2012-06-13
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Calmodulin (protein) L-selectin (protein)
Unique Ligands	CA

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2LX9	Download File View File

Solution Structure of Escherichia coli Ferrous Iron transport protein A (FeoA)

Lau, C.K.Y., Ishida, H., Liu, Z., Vogel, H.J.

(2013) J Bacteriol 195: 46-55

Released	2012-11-14
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	Ferrous iron transport protein A (protein)

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2M73	Download File View File

solution structure of the calmodulin-binding domain of plant calcium-ATPase ACA8

Jamshidiha, M., Ishida, H., Gifford, J.L., Vogel, H.J.

To be published

Released	2014-04-16
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	Calcium-transporting ATPase 8, plasma membrane-type (protein)

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2M7E	Download File View File

solution structure of the calmodulin-binding domain of plant calcium-ATPase ACA2

Jamshidiha, M., Ishida, H., Gifford, J.L., Vogel, H.J.

To be published

Released	2014-04-23
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	Calcium-transporting ATPase 2, plasma membrane-type (protein)

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2MQE	Download File View File

Solution structure of Escherichia coli Outer membrane protein A C-terminal domain

Ishida, H., Vogel, H.

(2014) Biochim Biophys Acta 1838: 3014-3024

Released	2014-09-03
Method	SOLUTION NMR
Organisms	Escherichia coli DH1
Macromolecule	OmpA domain protein transmembrane region-containing protein (protein)

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2N98	Download File View File

Solution structure of acyl carrier protein LipD from Actinoplanes friuliensis

Paul, S., Ishida, H., Liu, Z., Nguyen, L.T., Vogel, H.J.

(2017) Protein Sci 26: 946-959

Released	2016-11-16
Method	SOLUTION NMR
Organisms	Actinoplanes friuliensis
Macromolecule	Acyl carrier protein (protein)

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2RO8	Download File View File

Solution structure of calcium bound soybean calmodulin isoform 1 N-terminal domain

Ishida, H., Huang, H., Yamniuk, A.P., Takaya, Y., Vogel, H.J.

(2008) J Biol Chem 283: 14619-14628

Released	2008-04-08
Method	SOLUTION NMR
Organisms	Glycine max
Macromolecule	Calmodulin (protein)
Unique Ligands	CA

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2RO9	Download File View File

Solution structure of calcium bound soybean calmodulin isoform 1 C-terminal domain

Ishida, H., Huang, H., Yamniuk, A.P., Takaya, Y., Vogel, H.J.

(2008) J Biol Chem 283: 14619-14628

Released	2008-04-08
Method	SOLUTION NMR
Organisms	Glycine max
Macromolecule	Calmodulin-2 (protein)
Unique Ligands	CA

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2ROA	Download File View File

Solution structure of calcium bound soybean calmodulin isoform 4 N-terminal domain

Ishida, H., Huang, H., Yamniuk, A.P., Takaya, Y., Vogel, H.J.

(2008) J Biol Chem 283: 14619-14628

Released	2008-04-08
Method	SOLUTION NMR
Organisms	Glycine max
Macromolecule	Calmodulin (protein)
Unique Ligands	CA

1 to 25 of 57 Structures

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