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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Kim, S.S."

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Homo sapiens (5)
	Thermococcus onnurineus NA1 (3)
	metagenome (3)
	Caulobacter vibrioides CB15 (1)
	Sinorhizobium meliloti 1021 (1)
	Vibrio parahaemolyticus (1)
	uncultured bacterium (1)

Taxonomy

	Eukaryota (5)
	Bacteria (4)
	Archaea (3)
	unclassified sequences (3)

Experimental Method

X-RAY DIFFRACTION (15)

Polymer Entity Type

	Protein (15)
	RNA (4)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (9)
	2.0 - 2.5 (4)
	2.5 - 3.0 (1)

Release Date

	2010 - 2014 (6)
	2015 - 2019 (4)
	2020 - 2024 (5)

Enzyme Classification Name

	Hydrolases (6)
	Transferases (1)

Symmetry Type

	Asymmetric (9)
	Dihedral (4)
	Cyclic (2)

SCOP Classification

	Alpha and beta proteins (a/b) (4)
	Artifacts (3)

AllSelected

1 to 15 of 15 Structures

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3V67	Download File View File

Periplasmic domain of Vibrio parahaemolyticus CpxA

Kwon, E., Kim, D.Y., Ngo, T.D., Gross, J.D., Kim, K.K.

(2012) Protein Sci 21: 1334-1343

Released	2012-09-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Vibrio parahaemolyticus
Macromolecule	Sensor protein CpxA (protein)

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4J7A	Download File View File

Crystal Structure of Est25 - a Bacterial Homolog of Hormone-Sensitive Lipase from a Metagenomic Library

Ngo, T.D., Ryu, B.H., Ju, H.S., Jang, E.J., Park, K.S., Joo, S.B., Kim, K.K., Kim, D.H.

(2014) Acta Crystallogr D Biol Crystallogr 69: 1726-1737

Released	2014-01-15
Method	X-RAY DIFFRACTION 1.492 Å
Organisms	uncultured bacterium
Macromolecule	Esterase (protein)

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4P6B	Download File View File

Crystal structure of Est-Y29,a novel penicillin-binding protein/beta-lactamase homolog from a metagenomic library

Ngo, T.D., Ryu, B.H., Ju, H.S., Jang, E.J., Kim, K.K., Kim, D.H.

(2014) Acta Crystallogr D Biol Crystallogr 70: 2455-2466

Released	2014-09-10
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	metagenome
Macromolecule	Est-Y29 (protein)

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4P85	Download File View File

Crystal structure of Est-Y29, a novel penicillin-binding protein/beta-lactamase homolog from a metagenomic library

Ngo, T.D., Ryu, B.H., Ju, H.S., Jang, E.J., Kim, K.K., Kim, D.H.

(2014) Acta Crystallogr D Biol Crystallogr 70: 2455-2466

Released	2014-09-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	metagenome
Macromolecule	Est-Y29 (protein)
Unique Ligands	DEP

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4P87	Download File View File

Crystal structure of Est-Y29, a novel penicillin-binding protein/beta-lactamase homolog from a metagenomic library

Ngo, T.D., Ryu, B.H., Ju, H.S., Jang, E.J., Kim, K.K., Kim, D.H.

(2014) Acta Crystallogr D Biol Crystallogr 70: 2455-2466

Released	2014-09-10
Method	X-RAY DIFFRACTION 1.999 Å
Organisms	metagenome
Macromolecule	Est-Y29 (protein)
Unique Ligands	4NP

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4TX1	Download File View File

The crystal structure of carbohydrate acetylesterase family member from Sinorhizobium meliloti

Kim, K., Kim, S.S., Pandian, R., Ngo, T.D.

(2015) FEBS Lett 589: 117-122

Released	2014-12-24
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Sinorhizobium meliloti 1021
Macromolecule	Esterase (protein)

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4YGQ	Download File View File

Crystal structure of HAD phosphatase from Thermococcus onnurineus

Ngo, T.D., Le, B.V., Subramani, V.K., Nguyen, C.M.T., Lee, H.S., Cho, Y., Kim, K.K., Hwang, H.Y.

(2015) Biochem Biophys Res Commun 461: 122-127

Released	2015-04-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermococcus onnurineus NA1
Macromolecule	Hydrolase (protein)
Unique Ligands	TBU

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4YGR	Download File View File

Crystal structure of HAD phosphatase from Thermococcus onnurineus

Ngo, T.D., Le, B.V., Subramani, V.K., Nguyen, C.M.T., Lee, H.S., Cho, Y., Kim, K.K., Hwang, H.Y.

(2015) Biochem Biophys Res Commun 461: 122-127

Released	2015-04-22
Method	X-RAY DIFFRACTION 1.703 Å
Organisms	Thermococcus onnurineus NA1
Macromolecule	Hydrolase (protein)
Unique Ligands	MG, NHE

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4YGS	Download File View File

Crystal structure of HAD phosphatase from Thermococcus onnurineus

Ngo, T.D., Le, B.V., Subramani, V.K., Nguyen, C.M.T., Lee, H.S., Cho, Y., Kim, K.K., Hwang, H.Y.

(2015) Biochem Biophys Res Commun 461: 122-127

Released	2015-04-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Thermococcus onnurineus NA1
Macromolecule	Hydrolase (protein)
Unique Ligands	CIT, MG

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5GKV	Download File View File

Crystal Structure of a Novel Penicillin-Binding Protein (PBP) Homolog from Caulobacter crescentus

Ngo, T.D., Ryu, B.H., Kim, B.Y., Yoo, W.K., Lee, E.J., Lee, S.J., Kim, T.D., Kim, K.K.

To be published

Released	2017-07-12
Method	X-RAY DIFFRACTION 1.901 Å
Organisms	Caulobacter vibrioides CB15
Macromolecule	Esterase A (protein)

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6UV0	Download File View File

Crystal structure of apo core domain of RNA helicase DDX17

Ngo, T.D., Partin, A.C., Nam, Y.

(2019) Cell Rep 29: 4024-4035.e5

Released	2020-01-01
Method	X-RAY DIFFRACTION 2.601 Å
Organisms	Homo sapiens
Macromolecule	Probable ATP-dependent RNA helicase DDX17 (protein)
Unique Ligands	MG

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6UV1	Download File View File

Crystal structure of RNA helicase DDX17 in complex of rU10 RNA

Ngo, T.D., Partin, A.C., Nam, Y.

(2019) Cell Rep 29: 4024-4035.e5

Released	2020-01-01
Method	X-RAY DIFFRACTION 2.307 Å
Organisms	Homo sapiens
Macromolecule	Probable ATP-dependent RNA helicase DDX17 (protein) RNA rU10 (nucleic acid)
Unique Ligands	ADP, BEF, MG

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6UV2	Download File View File

Crystal structure of the core domain of RNA helicase DDX17 with RNA pri-125a-oligo1

Ngo, T.D., Partin, A.C., Nam, Y.

(2019) Cell Rep 29: 4024-4035.e5

Released	2020-01-01
Method	X-RAY DIFFRACTION 1.894 Å
Organisms	Homo sapiens
Macromolecule	Probable ATP-dependent RNA helicase DDX17 (protein) RNA 125a_oligo1 (nucleic acid)
Unique Ligands	ADP, BEF, MG

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6UV3	Download File View File

Crystal structure of the core domain of RNA helicase DDX17 with RNA pri-125a-oligo2

Ngo, T.D., Partin, A.C., Nam, Y.

(2019) Cell Rep 29: 4024-4035.e5

Released	2020-01-01
Method	X-RAY DIFFRACTION 1.597 Å
Organisms	Homo sapiens
Macromolecule	Probable ATP-dependent RNA helicase DDX17 (protein) 125a-oligo2 (nucleic acid)
Unique Ligands	ADP, BEF, MG

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6UV4	Download File View File

Crystal structure of the core domain of RNA helicase DDX17 with RNA pri-18a-oligo1

Ngo, T.D., Partin, A.C., Nam, Y.

(2019) Cell Rep 29: 4024-4035.e5

Released	2020-01-01
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Probable ATP-dependent RNA helicase DDX17 (protein) 18a_oligo1 (nucleic acid)
Unique Ligands	ADP, BEF, MG

1 to 15 of 15 Structures

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