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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Kondrashov, D.A."

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Search Summary

This query matches 258 Structures.

Refinements

Structure Determination Methodology

experimental (258)

Scientific Name of Source Organism

	Shigella flexneri (203)
	Shigella flexneri 2a str. 2457T (23)
	Shigella flexneri 2a str. 301 (10)
	Shigella flexneri 2a (8)
	Shigella flexneri 5a str. M90T (8)
	Escherichia coli (4)
	Shigella flexneri 5 str. 8401 (3)
	Archaeoglobus fulgidus DSM 4304 (2)
	Homo sapiens (2)
	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (2)

More...

Taxonomy

	Bacteria (258)
	Eukaryota (3)
	Archaea (2)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (202)
	ELECTRON MICROSCOPY (41)
	SOLUTION NMR (15)
	SOLID-STATE NMR (1)
	SOLUTION SCATTERING (1)

Polymer Entity Type

Protein (258)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (5)
	1.5 - 2.0 (57)
	2.0 - 2.5 (64)
	2.5 - 3.0 (52)
	3.0 - 3.5 (28)
	3.5 - 4.0 (18)
	4.0 - 4.5 (8)
	> 4.5 (10)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (10)
	2005 - 2009 (63)
	2010 - 2014 (52)
	2015 - 2019 (60)
	2020 - 2024 (68)
	2025 - 2029 (1)

Enzyme Classification Name

	Transferases (34)
	Hydrolases (29)
	Translocases (20)
	Lyases (12)
	Ligases (6)
	Oxidoreductases (5)
	Isomerases (1)

Membrane Protein Annotation

	mpstruc (29)
	OPM (21)
	MemProtMD (16)
	PDBTM (16)

Symmetry Type

	Asymmetric (167)
	Cyclic (98)
	Dihedral (7)
	Helical (3)
	Octahedral (1)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (27)
	Alpha and beta proteins (a+b) (19)
	All alpha proteins (17)
	Artifacts (16)
	All beta proteins (7)
	Multi-domain proteins (alpha and beta) (2)
	Peptides (1)

AllSelected

1 to 25 of 258 Structures

Page 1 of 11

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1AFI: Entity 1	Download File View File

STRUCTURE OF THE REDUCED FORM OF MERP, THE PERIPLASMIC PROTEIN FROM THE BACTERIAL MERCURY DETOXIFICATION SYSTEM, NMR, 20 STRUCTURES

Steele, R.A., Opella, S.J.

(1997) Biochemistry 36: 6885-6895

Released	1997-07-23
Method	SOLUTION NMR
Chain ID	A
Organism	Shigella flexneri
Macromolecule	MERP

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1AFJ: Entity 1	Download File View File

STRUCTURE OF THE MERCURY-BOUND FORM OF MERP, THE PERIPLASMIC PROTEIN FROM THE BACTERIAL MERCURY DETOXIFICATION SYSTEM, NMR, 20 STRUCTURES

Steele, R.A., Opella, S.J.

(1997) Biochemistry 36: 6885-6895

Released	1997-07-23
Method	SOLUTION NMR
Chain ID	A
Organism	Shigella flexneri
Macromolecule	MERP

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1DVW: Entity 1	Download File View File

NMR structure of 18 residue peptide from merp protein

Veglia, G., Porcelli, F., De Silva, T.M., Prantner, A.M., Opella, S.J.

(2000) J Am Chem Soc 122: 2389-2390

Released	2003-12-23
Method	SOLUTION NMR
Chain ID	A
Organism	Shigella flexneri
Macromolecule	18 RESIDUE PEPTIDE FROM MERP PROTEIN

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1PT5: Entity 1	Download File View File

Crystal structure of gene yfdW of E. coli

Gruez, A., Roig-Zamboni, V., Valencia, C., Campanacci, V., Cambillau, C.

(2003) J Biol Chem 278: 34582-34586

Released	2003-09-09
Method	X-RAY DIFFRACTION 2 Å
Chain IDs	A, B
Organism	Escherichia coli Shigella flexneri
Macromolecule	Hypothetical protein yfdW

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1PT7: Entity 1	Download File View File

Crystal structure of the apo-form of the yfdW gene product of E. coli

Gruez, A., Roig-Zamboni, V., Valencia, C., Campanacci, V., Cambillau, C.

(2003) J Biol Chem 278: 34582-34586

Released	2003-09-09
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	A, B
Organism	Escherichia coli Shigella flexneri
Macromolecule	Hypothetical protein yfdW

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1PT8: Entity 1	Download File View File

Crystal structure of the yfdW gene product of E. coli, in complex with oxalate and acetyl-CoA

Gruez, A., Roig-Zamboni, V., Valencia, C., Campanacci, V., Cambillau, C.

(2003) J Biol Chem 278: 34582-34586

Released	2003-09-09
Method	X-RAY DIFFRACTION 2.2 Å
Chain IDs	A, B
Organism	Escherichia coli Shigella flexneri
Macromolecule	Hypothetical protein yfdW

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1QCA: Entity 1	Download File View File

QUADRUPLE MUTANT Q92C, N146F, Y168F, I172V TYPE III CAT COMPLEXED WITH FUSIDIC ACID. CRYSTALS GROWN AT PH 6.3. X-RAY DATA COLLECTED AT ROOM TEMPERATURE

Leslie, A.G.W.

(1995) J Mol Biol 254: 993-1005

Released	1995-10-15
Method	X-RAY DIFFRACTION 2.2 Å
Chain ID	A
Organism	Shigella flexneri
Macromolecule	TYPE III CHLORAMPHENICOL ACETYLTRANSFERASE

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1RQS: Entity 1	Download File View File

NMR structure of C-terminal domain of ribosomal protein L7 from E.coli

Bocharov, E.V., Sobol, A.G., Pavlov, K.V., Korzhnev, D.M., Jaravine, V.A., Gudkov, A.T., Arseniev, A.S.

(2004) J Biol Chem 279: 17697-17706

Released	2004-03-02
Method	SOLUTION NMR
Chain ID	A
Organism	Escherichia coli Escherichia coli O157:H7 Escherichia coli O6 Shigella flexneri
Macromolecule	50S ribosomal protein L7/L12

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1RY9: Entity 1	Download File View File

Spa15, a Type III Secretion Chaperone from Shigella flexneri

van Eerde, A., Hamiaux, C., Perez, J., Parsot, C., Dijkstra, B.W.

(2004) EMBO Rep 5: 477-483

Released	2004-04-27
Method	X-RAY DIFFRACTION 1.82 Å
Chain IDs	A, B, C, D
Organism	Shigella flexneri
Macromolecule	Surface presentation of antigens protein spaK

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1TWD: Entity 1	Download File View File

Crystal Structure of the Putative Copper Homeostasis Protein (CutC) from Shigella flexneri, Northeast Structural Genomics Target SfR33

Forouhar, F., Lee, I., Vorobiev, S.M., Ma, L.-C., Shastry, R., Conover, K., Xiao, R., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2004-07-20
Method	X-RAY DIFFRACTION 1.7 Å
Chain IDs	A, B
Organism	Shigella flexneri
Macromolecule	Copper homeostasis protein cutC

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1U05: Entity 1	Download File View File

Crystal structure of protein yfiH from Shigella flexneri, Pfam DUF152

Seetharaman, J., Swaminathan, S., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2004-08-17
Method	X-RAY DIFFRACTION 2.5 Å
Chain IDs	A, B
Organism	Shigella flexneri
Macromolecule	orf, conserved hypothetical protein

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1X7I: Entity 1	Download File View File

Crystal structure of the native copper homeostasis protein (cutCm) with calcium binding from Shigella flexneri 2a str. 301

Zhu, D.Y., Zhu, Y.Q., Huang, R.H., Xiang, Y., Wang, D.C.

(2004) Proteins 58: 764-768

Released	2005-03-01
Method	X-RAY DIFFRACTION 1.7 Å
Chain IDs	A, B
Organism	Shigella flexneri 2a str. 301
Macromolecule	Copper homeostasis protein cutC

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1X8C: Entity 1	Download File View File

Crystal structure of the SeMet-derivative copper homeostasis protein (cutCm) with calcium binding from Shigella flexneri 2a str. 301

Wang, D.C., Zhu, D.Y.

(2005) Proteins 58: 764-768

Released	2005-08-09
Method	X-RAY DIFFRACTION 2.1 Å
Chain IDs	A, B
Organism	Shigella flexneri 2a str. 301
Macromolecule	Copper homeostasis protein cutC

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1XAF: Entity 1	Download File View File

Crystal Structure of Protein of Unknown Function YfiH from Shigella flexneri 2a str. 2457T

Kim, Y., Maltseva, N., Dementieva, I., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

(2006) Proteins 63: 1097-1101

Released	2004-08-31
Method	X-RAY DIFFRACTION 2.01 Å
Chain IDs	A, B
Organism	Shigella flexneri 2a str. 2457T
Macromolecule	orf, conserved hypothetical protein

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1XSR: Entity 1	Download File View File

X-Ray structure of Northeast Structural Genomics Consortium target SfR7

Kuzin, A.P., Vorobiev, S.M., Edstrom, W., Yong, W., Acton, T., Ma, L.-C., Xiao, R., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2004-10-26
Method	X-RAY DIFFRACTION 2.8 Å
Chain IDs	A, B
Organism	Shigella flexneri
Macromolecule	Ureidoglycolate hydrolase

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1Y2I: Entity 1	Download File View File

Crystal Structure of MCSG Target APC27401 from Shigella flexneri

Brunzelle, J.S., Minasov, G., Yang, X., Shuvalova, L., Collart, F.R., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2005-01-04
Method	X-RAY DIFFRACTION 2.3 Å
Chain IDs	A, B, C, D, E
Organism	Shigella flexneri 2a str. 2457T
Macromolecule	Hypothetical Protein S0862

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1Y9L: Entity 1	Download File View File

The X-ray structure of an secretion system protein

Lario, P.I., Pfuetzer, R.A., Frey, E.A., Creagh, L., Haynes, C., Maurelli, A.T., Strynadka, N.C.

(2005) EMBO J 24: 1111-1121

Released	2005-04-12
Method	X-RAY DIFFRACTION 1.5 Å
Chain ID	A
Organism	Shigella flexneri
Macromolecule	Lipoprotein mxiM

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1Y9T: Entity 1	Download File View File

Crystal structure of a type III secretion system protein complexed with the lipid, 1-monohexanoyl-2-hydroxy-sn-glycero-3-phosphate

Lario, P.I., Strynadka, N.C.

(2005) EMBO J 24: 1111-1121

Released	2005-04-12
Method	X-RAY DIFFRACTION 1.87 Å
Chain ID	A
Organism	Shigella flexneri
Macromolecule	Lipoprotein mxiM

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1YLO: Entity 1	Download File View File

Crystal Structure of Protein of Unknown Function (Possible Aminopeptidase) S2589 from Shigella flexneri 2a str. 2457T

Nocek, B.P., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2005-03-08
Method	X-RAY DIFFRACTION 2.15 Å
Chain IDs	A, B, C, D, E
Organism	Shigella flexneri 2a str. 2457T
Macromolecule	hypothetical protein SF2450

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1Z67: Entity 1	Download File View File

Structure of Homeodomain-like Protein of Unknown Function S4005 from Shigella flexneri

Osipiuk, J., Maltseva, N., Dementieva, I., Clancy, S., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

(2006) Proteins 65: 509-513

Released	2005-05-03
Method	X-RAY DIFFRACTION 1.45 Å
Chain ID	A
Organism	Shigella flexneri 2a str. 2457T
Macromolecule	hypothetical protein S4005

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2B20: Entity 1	Download File View File

Crystal Structure of Enterochelin Esterase from Shigella flexneri Enterochelin Esterase

Kim, Y., Maltseva, N., Dementieva, I., Quartey, P., Holzle, D., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2005-11-01
Method	X-RAY DIFFRACTION 2.95 Å
Chain ID	A
Organism	Shigella flexneri 2a str. 2457T
Macromolecule	enterochelin esterase

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2CA5: Entity 1	Download File View File

MxiH needle protein of Shigella Flexneri (monomeric form, residues 1- 78)

Deane, J.E., Roversi, P., Cordes, F.S., Johnson, S., Kenjale, R., Picking, W.L., Picking, W.D., Blocker, A.J., Lea, S.M.

(2006) Proc Natl Acad Sci U S A 103: 12529

Released	2006-08-07
Method	X-RAY DIFFRACTION 2.1 Å
Chain IDs	A, B
Organism	Shigella flexneri
Macromolecule	MXIH

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2DFJ: Entity 1	Download File View File

Crystal Structure of the Diadenosine Tetraphosphate Hydrolase from Shigella flexneri 2a

Wang, Q.H., Hu, W.X., Bi, R.C.

(2006) Proteins 65: 1032-1035

Released	2006-12-05
Method	X-RAY DIFFRACTION 2.72 Å
Chain IDs	A, B
Organism	Shigella flexneri 2a
Macromolecule	diadenosinetetraphosphatase

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2FOR: Entity 1	Download File View File

Crystal Structure of the Shigella flexneri Farnesyl Pyrophosphate Synthase Complex with an Isopentenyl Pyrophosphate

Minasov, G., Brunzelle, J.S., Shuvalova, L., Collart, F.R., Joachimiak, A., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2006-01-31
Method	X-RAY DIFFRACTION 2 Å
Chain IDs	A, B
Organism	Shigella flexneri
Macromolecule	Geranyltranstransferase

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2FZV: Entity 1	Download File View File

Crystal Structure of an apo form of a Flavin-binding Protein from Shigella flexneri

Vorontsov, I.I., Minasov, G., Brunzelle, J.S., Shuvalova, L., Collart, F.R., Joachimiak, A., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)

(2007) Protein Sci 16: 2483-2490

Released	2006-02-21
Method	X-RAY DIFFRACTION 1.7 Å
Chain IDs	A, B, C, D
Organism	Shigella flexneri 2a str. 2457T
Macromolecule	putative arsenical resistance protein

1 to 25 of 258 Structures

Page 1 of 11

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