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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

QUERY: Structure Author = "Nakai, H."

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This query matches 44 Structures.

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1BTP	Download File View File

UNIQUE BINDING OF A NOVEL SYNTHETIC INHIBITOR, N-[3-[4-[4-(AMIDINOPHENOXY)-CARBONYL]PHENYL]-2-METHYL-2-PROPENOYL]-N-ALLYLGLYCINE METHANESULFONATE TO BOVINE TRYPSIN, REVEALED BY THE CRYSTAL STRUCTURE OF THE COMPLEX

Odagaki, Y., Nakai, H., Senokuchi, K., Kawamura, M., Hamanaka, N., Nakamura, M., Tomoo, K., Ishida, T.

(1995) Biochemistry 34: 12849-12853

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bos taurus
Macromolecule	BETA-TRYPSIN (protein)
Unique Ligands	CA

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1FZZ	Download File View File

THE CRYSTAL STRUCTURE OF THE COMPLEX OF NON-PEPTIDIC INHIBITOR ONO-6818 AND PORCINE PANCREATIC ELASTASE.

Odagaki, Y., Ohmoto, K., Matsuoka, S., Hamanaka, N., Nakai, H., Toda, M., Katsuya, Y.

(2001) Bioorg Med Chem 9: 647-651

Released	2001-10-04
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Sus scrofa
Macromolecule	ELASTASE 1 (protein)
Unique Ligands	681

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4KTP	Download File View File

Crystal structure of 2-O-alpha-glucosylglycerol phosphorylase in complex with glucose

Touhara, K.K., Nihira, T., Kitaoka, M., Nakai, H., Fushinobu, S.

(2014) J Biol Chem 289: 18067-18075

Released	2014-05-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	[Bacillus] selenitireducens MLS10
Macromolecule	Glycoside hydrolase family 65 central catalytic (protein)
Unique Ligands	1PE, BGC, CA, PG4

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4KTR	Download File View File

Crystal structure of 2-O-alpha-glucosylglycerol phosphorylase in complex with isofagomine and glycerol

Touhara, K.K., Nihira, T., Kitaoka, M., Nakai, H., Fushinobu, S.

(2014) J Biol Chem 289: 18067-18075

Released	2014-05-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	[Bacillus] selenitireducens MLS10
Macromolecule	Glycoside hydrolase family 65 central catalytic (protein)
Unique Ligands	1PE, 7PE, CA, GOL, IFM, P6G, PE4, PE5, PG4, PGE

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4ZO6	Download File View File

Crystal Structure of mutant (D270A) beta-glucosidase from Listeria innocua in complex with cellobiose

Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.

(2016) PLoS One 11: e0148870-e0148870

Released	2016-05-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Listeria innocua Clip11262
Macromolecule	Lin1840 protein (protein)
Unique Ligands	BGC, GOL, MG
Unique branched monosaccharides	BGC

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4ZO7	Download File View File

Crystal structure of mutant (D270A) beta-glucosidase from Listeria innocua in complex with gentiobiose

Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.

(2016) PLoS One 11: e0148870-e0148870

Released	2016-05-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Listeria innocua Clip11262
Macromolecule	Lin1840 protein (protein)
Unique Ligands	BGC, GLC, GOL, MG
Unique branched monosaccharides	BGC, GLC

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4ZO8	Download File View File

Crystal Structure of mutant (D270A) beta-glucosidase from Listeria innocua in complex with sophorose

Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.

(2016) PLoS One 11: e0148870-e0148870

Released	2016-05-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Listeria innocua Clip11262
Macromolecule	Lin1840 protein (protein)
Unique Ligands	MG
Unique branched monosaccharides	BGC

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4ZO9	Download File View File

Crystal Structure of mutant (D270A) beta-glucosidase from Listeria innocua in complex with laminaribiose

Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.

(2016) PLoS One 11: e0148870-e0148870

Released	2016-05-18
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Listeria innocua Clip11262
Macromolecule	Lin1840 protein (protein)
Unique Ligands	BGC, GOL, MG
Unique branched monosaccharides	BGC, GLC

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4ZOA	Download File View File

Crystal Structure of beta-glucosidase from Listeria innocua in complex with isofagomine

Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.

(2016) PLoS One 11: e0148870-e0148870

Released	2016-05-18
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Listeria innocua Clip11262
Macromolecule	Lin1840 protein (protein)
Unique Ligands	IFM, MG, PEG

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4ZOB	Download File View File

Crystal Structure of beta-glucosidase from Listeria innocua in complex with gluconolactone

Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.

(2016) PLoS One 11: e0148870-e0148870

Released	2016-05-18
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Listeria innocua Clip11262
Macromolecule	Lin1840 protein (protein)
Unique Ligands	GOL, LGC, MG, PEG, SO4

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4ZOC	Download File View File

Crystal Structure of mutant (D270A) beta-glucosidase from Listeria innocua in complex with sophorotriose

Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.

(2016) PLoS One 11: e0148870-e0148870

Released	2016-05-18
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Listeria innocua Clip11262
Macromolecule	Lin1840 protein (protein)
Unique Ligands	BGC, GOL, MG

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4ZOD	Download File View File

Crystal Structure of beta-glucosidase from Listeria innocua in complex with glucose

Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.

(2016) PLoS One 11: e0148870-e0148870

Released	2016-05-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Listeria innocua Clip11262
Macromolecule	Lin1840 protein (protein)
Unique Ligands	BGC, GOL, MG, PEG, SO4

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4ZOE	Download File View File

Crystal Structure of beta-glucosidase from Listeria innocua

Nakajima, M., Yoshida, R., Miyanaga, A., Abe, K., Takahashi, Y., Sugimoto, N., Toyoizumi, H., Nakai, H., Kitaoka, M., Taguchi, H.

(2016) PLoS One 11: e0148870-e0148870

Released	2016-05-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Listeria innocua Clip11262
Macromolecule	Lin1840 protein (protein)
Unique Ligands	GOL, MG

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5H3Z	Download File View File

Crystal Structure of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans

Nakajima, M., Tanaka, N., Furukawa, N., Nihira, T., Kodutsumi, Y., Takahashi, Y., Sugimoto, N., Miyanaga, A., Fushinobu, S., Taguchi, H., Nakai, H.

(2017) Sci Rep 7: 42671-42671

Released	2017-03-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Lachnoclostridium phytofermentans ISDg
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	CA, GOL, PEG

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5H40	Download File View File

Crystal Structure of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans in complex with sophorose

Nakajima, M., Tanaka, N., Furukawa, N., Nihira, T., Kodutsumi, Y., Takahashi, Y., Sugimoto, N., Miyanaga, A., Fushinobu, S., Taguchi, H., Nakai, H.

(2017) Sci Rep 7: 42671-42671

Released	2017-03-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Lachnoclostridium phytofermentans ISDg
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	CA, GOL
Unique branched monosaccharides	BGC

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5H41	Download File View File

Crystal Structure of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans in complex with sophorose, isofagomine, sulfate ion

Nakajima, M., Tanaka, N., Furukawa, N., Nihira, T., Kodutsumi, Y., Takahashi, Y., Sugimoto, N., Miyanaga, A., Fushinobu, S., Taguchi, H., Nakai, H.

(2017) Sci Rep 7: 42671-42671

Released	2017-03-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Lachnoclostridium phytofermentans ISDg
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	IFM, SO4
Unique branched monosaccharides	BGC, GLC

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5H42	Download File View File

Crystal Structure of 1,2-beta-oligoglucan phosphorylase from Lachnoclostridium phytofermentans in complex with alpha-d-glucose-1-phosphate

Nakajima, M., Tanaka, N., Furukawa, N., Nihira, T., Kodutsumi, Y., Takahashi, Y., Sugimoto, N., Miyanaga, A., Fushinobu, S., Taguchi, H., Nakai, H.

(2017) Sci Rep 7: 42671-42671

Released	2017-03-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Lachnoclostridium phytofermentans ISDg
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	G1P, GLC

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5XXL	Download File View File

Crystal structure of GH3 beta-glucosidase from Bacteroides thetaiotaomicron

Nakajima, M., Ishiguro, R., Tanaka, N., Abe, K., Maeda, T., Miyanaga, A., Takahash, Y., Sugimoto, N., Nakai, H., Taguchi, H.

(2017) FEBS Lett 591: 3926-3936

Released	2017-12-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	Periplasmic beta-glucosidase (protein)
Unique Ligands	MG, PEG, PG4

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5XXM	Download File View File

Crystal structure of GH3 beta-glucosidase from Bacteroides thetaiotaomicron in complex with gluconolactone

Nakajima, M., Ishiguro, R., Tanaka, N., Abe, K., Maeda, T., Miyanaga, A., Takahash, Y., Sugimoto, N., Nakai, H., Taguchi, H.

(2017) FEBS Lett 591: 3926-3936

Released	2017-12-13
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	Periplasmic beta-glucosidase (protein)
Unique Ligands	LGC, MG, PG4

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5XXN	Download File View File

Crystal Structure of mutant (D286N) beta-glucosidase from Bacteroides thetaiotaomicron in complex with sophorose

Nakajima, M., Ishiguro, R., Tanaka, N., Abe, K., Maeda, T., Miyanaga, A., Takahashi, Y., Sugimono, N., Nakai, H., Taguchi, H.

(2017) FEBS Lett 591: 3926-3936

Released	2017-12-13
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	Periplasmic beta-glucosidase (protein)
Unique Ligands	GLC, MG, PEG, PG4
Unique branched monosaccharides	BGC

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5XXO	Download File View File

Crystal structure of mutant (D286N) GH3 beta-glucosidase from Bacteroides thetaiotaomicron in complex with sophorotriose

Nakajima, M., Ishiguro, R., Tanaka, N., Abe, K., Maeda, T., Miyanaga, A., Takahash, Y., Sugimoto, N., Nakai, H., Taguchi, H.

(2017) FEBS Lett 591: 3926-3936

Released	2017-12-13
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Bacteroides thetaiotaomicron VPI-5482
Macromolecule	Periplasmic beta-glucosidase (protein)
Unique Ligands	BGC, MG, PEG, PG4
Unique branched monosaccharides	BGC

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5Z06	Download File View File

Crystal structure of beta-1,2-glucanase from Parabacteroides distasonis

Shimizu, H., Nakajima, M., Miyanaga, A., Takahashi, Y., Tanaka, N., Kobayashi, K., Sugimoto, N., Nakai, H., Taguchi, H.

(2018) Biochemistry 57: 3849-3860

Released	2018-05-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Parabacteroides distasonis ATCC 8503
Macromolecule	BDI_3064 protein (protein)
Unique Ligands	CA, GOL

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6IMU	Download File View File

The apo-structure of endo-beta-1,2-glucanase from Talaromyces funiculosus

Tanaka, N., Nakajima, M., Narukawa-Nara, M., Matsunaga, H., Kamisuki, S., Aramasa, H., Takahashi, Y., Sugimoto, N., Abe, K., Miyanaga, A., Yamashita, T., Sugawara, F., Kamakura, T., Komba, S., Nakai, H., Taguchi, H.

(2019) J Biol Chem 294: 7942-7965

Released	2019-04-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Talaromyces funiculosus
Macromolecule	Endo-beta-1,2-glucanase (protein)
Unique Ligands	CIT, GOL, NAG, PEG, PGE

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6IMV	Download File View File

The complex structure of endo-beta-1,2-glucanase from Talaromyces funiculosus with sophorose

(2019) J Biol Chem 294: 7942-7965

Released	2019-04-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Talaromyces funiculosus
Macromolecule	Endo-beta-1,2-glucanase (protein)
Unique Ligands	BGC, NAG, PEG
Unique branched monosaccharides	BGC, GLC, NAG

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6IMW	Download File View File

The complex structure of endo-beta-1,2-glucanase mutant (E262Q) from Talaromyces funiculosus with beta-1,2-glucan

(2019) J Biol Chem 294: 7942-7965

Released	2019-04-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Talaromyces funiculosus
Macromolecule	Endo-beta-1,2-glucanase (protein)
Unique Ligands	NAG, PEG
Unique branched monosaccharides	BGC