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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Nascimento, K.S."

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Pseudomonas syringae (4)
	Vibrio parahaemolyticus (4)
	Arabidopsis thaliana (3)
	Escherichia coli K-12 (3)
	Saccharomyces cerevisiae S288C (2)
	Vibrio parahaemolyticus RIMD 2210633 (2)
	Xanthomonas euvesicatoria (2)

Taxonomy

	Bacteria (15)
	Eukaryota (5)

Experimental Method

	X-RAY DIFFRACTION (10)
	ELECTRON MICROSCOPY (5)

Polymer Entity Type

Protein (15)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (3)
	2.5 - 3.0 (3)
	3.0 - 3.5 (3)
	4.0 - 4.5 (1)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (1)
	2015 - 2019 (5)
	2020 - 2024 (7)

Enzyme Classification Name

Transferases (1)

Membrane Protein Annotation

	OPM (5)
	PDBTM (5)
	MemProtMD (2)
	mpstruc (2)

Symmetry Type

	Asymmetric (12)
	Cyclic (4)

SCOP Classification

	Membrane and cell surface proteins and peptides (1)
	Coiled coil proteins (1)

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1 to 15 of 15 Structures

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2OIV	Download File View File

Structural Analysis of Xanthomonas XopD Provides Insights Into Substrate Specificity of Ubiquitin-like Protein Proteases

Chosed, R., Tomchick, D.R., Brautigam, C.A., Machius, M., Orth, K.

(2007) J Biological Chem 282: 6773-6782

Released	2007-05-29
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Xanthomonas euvesicatoria
Macromolecule	Xanthomonas outer protein D (protein)
Unique Ligands	PO4

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2OIX	Download File View File

Xanthomonas XopD C470A Mutant

Chosed, R., Tomchick, D.R., Brautigam, C.A., Machius, M., Orth, K.

(2007) J Biological Chem 282: 6773-6782

Released	2007-05-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Xanthomonas euvesicatoria
Macromolecule	Xanthomonas outer protein D (protein)

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3LET	Download File View File

Crystal Structure of Fic domain containing AMPylator, VopS

Luong, P.H., Kinch, L.N., Brautigam, C.A., Grishin, N.V., Tomchick, D.R., Orth, K.

To be published

Released	2010-04-21
Method	X-RAY DIFFRACTION 1.802 Å
Organisms	Vibrio parahaemolyticus
Macromolecule	Adenosine monophosphate-protein transferase vopS (protein)

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5KEV	Download File View File

Vibrio parahaemolyticus VtrA/VtrC complex

Tomchick, D.R., Orth, K., Rivera-Cancel, G.

(2016) Elife 5:

Released	2016-07-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	VtrA Protein (protein) VtrC Protein (protein)
Unique Ligands	SO4

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5KEW	Download File View File

Vibrio parahaemolyticus VtrA/VtrC complex bound to the bile salt taurodeoxycholate

Tomchick, D.R., Orth, K., Rivera-Cancel, G.

(2016) Elife 5:

Released	2016-07-20
Method	X-RAY DIFFRACTION 2.103 Å
Organisms	Vibrio parahaemolyticus RIMD 2210633
Macromolecule	VtrA Protein (protein) VtrC Protein (protein)
Unique Ligands	6SB, ACT, EDO, SO4

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6MRT	Download File View File

12-meric ClyA pore complex

Peng, W., de Souza Santos, M., Li, Y., Tomchick, D.R., Orth, K.

(2019) PLoS One 14: e0213423-e0213423

Released	2019-05-15
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Escherichia coli K-12
Macromolecule	Hemolysin E, chromosomal (protein)

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6MRU	Download File View File

13-meric ClyA pore complex

Peng, W., de Souza Santos, M., Li, Y., Tomchick, D.R., Orth, K.

(2019) PLoS One 14: e0213423-e0213423

Released	2019-05-15
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Escherichia coli K-12
Macromolecule	Hemolysin E, chromosomal (protein)

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6MRW	Download File View File

14-meric ClyA pore complex

Peng, W., de Souza Santos, M., Li, Y., Tomchick, D.R., Orth, K.

(2019) PLoS One 14: e0213423-e0213423

Released	2019-05-15
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Escherichia coli K-12
Macromolecule	Hemolysin E, chromosomal (protein)

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6PE4	Download File View File

Yeast Vo motor in complex with 1 VopQ molecule

Peng, W., Li, Y., Tomchick, D.R., Orth, K.

(2020) Nat Struct Mol Biol 27: 589-597

Released	2020-05-20
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Saccharomyces cerevisiae S288C Vibrio parahaemolyticus
Macromolecule	Unique protein chains: 9

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6PE5	Download File View File

Yeast Vo motor in complex with 2 VopQ molecules

Peng, W., Li, Y., Tomchick, D.R., Orth, K.

(2020) Nat Struct Mol Biol 27: 589-597

Released	2020-05-20
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Saccharomyces cerevisiae S288C Vibrio parahaemolyticus
Macromolecule	Unique protein chains: 9

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8DML	Download File View File

Vibrio parahaemolyticus VtrA/VtrC complex bound to the bile salt chenodeoxycholate

Tomchick, D.R., Orth, K., Zou, A.J.

(2023) J Biological Chem 299: 104591-104591

Released	2023-06-14
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Vibrio parahaemolyticus
Macromolecule	VtrA (protein) VtrC (protein)
Unique Ligands	CA, EDO, JN3, PG4

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8TWJ	Download File View File

AvrB_R266A bound with UDP

Peng, W., Orth, K.

(2024) Sci Adv 10: eadd5108-eadd5108

Released	2024-02-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas syringae
Macromolecule	Avirulence protein B (protein)
Unique Ligands	EDO, TRS, UDP

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8TWO	Download File View File

AvrB bound with UDP and RIN4_T166-Rha

Peng, W., Orth, K.

(2024) Sci Adv 10: eadd5108-eadd5108

Released	2024-02-28
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Arabidopsis thaliana Pseudomonas syringae
Macromolecule	Avirulence protein B (protein) RPM1-interacting protein 4 (protein)
Unique Ligands	RAM, UDP

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8TWS	Download File View File

AvrB bound with UDP-rhamnose and RIN4 C-NOI motif

Peng, W., Orth, K.

(2024) Sci Adv 10: eadd5108-eadd5108

Released	2024-02-28
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Arabidopsis thaliana Pseudomonas syringae
Macromolecule	Avirulence protein B (protein) RPM1-interacting protein 4 (protein)
Unique Ligands	AWU

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8TXF	Download File View File

AvrB bound with RIN4 C-NOI motif

Peng, W., Orth, K.

(2024) Sci Adv 10: eadd5108-eadd5108

Released	2024-02-28
Method	X-RAY DIFFRACTION 1.29 Å
Organisms	Arabidopsis thaliana Pseudomonas syringae
Macromolecule	Avirulence protein B (protein) RIN4 (protein)
Unique Ligands	EDO, TRS

1 to 15 of 15 Structures

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