RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Speir, J.A."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 24 Structures.

Refinements

Structure Determination Methodology

experimental (24)

Scientific Name of Source Organism

	Mus musculus (6)
	Byrnievirus HK97 (5)
	Flock House virus (5)
	Spodoptera frugiperda (4)
	Rattus norvegicus (3)
	Vesicular stomatitis Indiana virus (strain Glasgow) (3)
	Cowpea chlorotic mottle virus (2)
	Sendai virus (strain Enders) (2)
	Drosophila melanogaster (1)
	Helicoverpa armigera stunt virus (1)

More...

Taxonomy

	Eukaryota (13)
	Riboviria (9)
	Duplodnaviria (5)
	Riboviria (RNA viruses and viroids) (5)
	Eukaryota (eukaryotes) (2)
	Monodnaviria (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (23)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (24)
	RNA (7)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (3)
	2.5 - 3.0 (4)
	3.0 - 3.5 (3)
	3.5 - 4.0 (6)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (7)
	2005 - 2009 (7)
	2010 - 2014 (7)

Enzyme Classification Name

Hydrolases (5)

Symmetry Type

	Icosahedral (15)
	Asymmetric (9)
	Cyclic (2)

SCOP Classification

	Alpha and beta proteins (a+b) (13)
	All beta proteins (11)
	Artifacts (1)

AllSelected

1 to 24 of 24 Structures

Page 1 of 1

Sort by

Explore in 3D

1CWP	Download File View File

STRUCTURES OF THE NATIVE AND SWOLLEN FORMS OF COWPEA CHLOROTIC MOTTLE VIRUS DETERMINED BY X-RAY CRYSTALLOGRAPHY AND CRYO-ELECTRON MICROSCOPY

Speir, J.A., Johnson, J.E., Munshi, S., Wang, G., Timothy, S., Baker, T.S.

(1995) Structure 3: 63-77

Released	1995-05-22
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Cowpea chlorotic mottle virus
Macromolecule	Coat protein (protein) RNA (5'-R(APU)-3') (nucleic acid) RNA (5'-R(APUPAPU)-3') (nucleic acid)

Explore in 3D

1ED3	Download File View File

CRYSTAL STRUCTURE OF RAT MINOR HISTOCOMPATIBILITY ANTIGEN COMPLEX RT1-AA/MTF-E.

Speir, J.A., Stevens, J., Joly, E., Butcher, G.W., Wilson, I.A.

(2001) Immunity 14: 81-92

Released	2001-02-28
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Rattus norvegicus
Macromolecule	BETA-2-MICROGLOBULIN (protein) CLASS I MAJOR HISTOCOMPATIBILITY ANTIGEN RT1-AA (protein) PEPTIDE MTF-E (13N3E) (protein)

Explore in 3D

1FZJ	Download File View File

MHC CLASS I NATURAL MUTANT H-2KBM1 HEAVY CHAIN COMPLEXED WITH BETA-2 MICROGLOBULIN AND VESICULAR STOMATITIS VIRUS NUCLEOPROTEIN

Rudolph, M.G., Speir, J.A., Brunmark, A., Mattsson, N., Jackson, M.R., Peterson, P.A., Teyton, L., Wilson, I.A.

(2001) Immunity 14: 231-242

Released	2001-03-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus Vesicular stomatitis Indiana virus (strain Glasgow)
Macromolecule	BETA-2-MICROGLOBULIN (protein) H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, K-B ALPHA CHAIN (protein) NUCLEOCAPSID PROTEIN (protein)
Unique Ligands	MPD, NAG, PO4
Unique branched monosaccharides	FUL, NAG

Explore in 3D

1FZK	Download File View File

MHC CLASS I NATURAL MUTANT H-2KBM1 HEAVY CHAIN COMPLEXED WITH BETA-2 MICROGLOBULIN AND SENDAI VIRUS NUCLEOPROTEIN

Rudolph, M.G., Speir, J.A., Brunmark, A., Mattsson, N., Jackson, M.R., Peterson, P.A., Teyton, L., Wilson, I.A.

(2001) Immunity 14: 231-242

Released	2001-03-28
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mus musculus Sendai virus (strain Enders)
Macromolecule	H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, K-B ALPHA CHAIN (protein) PROTEIN (BETA-2-MICROGLOBULIN) (protein) PROTEIN (NUCLEOCAPSID PROTEIN) (protein)
Unique Ligands	MPD, MRD, NAG, PO4
Unique branched monosaccharides	FUL, NAG

Explore in 3D

1FZM	Download File View File

MHC CLASS I NATURAL MUTANT H-2KBM8 HEAVY CHAIN COMPLEXED WITH BETA-2 MICROGLOBULIN AND VESICULAR STOMATITIS VIRUS NUCLEOPROTEIN

Rudolph, M.G., Speir, J.A., Brunmark, A., Mattsson, N., Jackson, M.R., Peterson, P.A., Teyton, L., Wilson, I.A.

(2001) Immunity 14: 231-242

Released	2001-03-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus Vesicular stomatitis Indiana virus (strain Glasgow)
Macromolecule	H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, K-B ALPHA CHAIN (protein) PROTEIN (BETA-2-MICROGLOBULIN) (protein) PROTEIN (NUCLEOCAPSID PROTEIN) (protein)
Unique Ligands	MPD, MRD, NAG, PO4
Unique branched monosaccharides	FUL, NAG

Explore in 3D

1FZO	Download File View File

MHC CLASS I NATURAL MUTANT H-2KBM8 HEAVY CHAIN COMPLEXED WITH BETA-2 MICROGLOBULIN AND SENDAI VIRUS NUCLEOPROTEIN

Rudolph, M.G., Speir, J.A., Brunmark, A., Mattsson, N., Jackson, M.R., Peterson, P.A., Teyton, L., Wilson, I.A.

(2001) Immunity 14: 231-242

Released	2001-03-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus Sendai virus (strain Enders)
Macromolecule	H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, K-B ALPHA CHAIN (protein) PROTEIN (BETA-2-MICROGLOBULIN) (protein) PROTEIN (NUCLEOCAPSID PROTEIN) (protein)
Unique Ligands	MPD, MRD, NAG, PO4
Unique branched monosaccharides	FUL, NAG

Explore in 3D

1KBG	Download File View File

MHC Class I H-2KB Presented Glycopeptide RGY8-6H-GAL2

Speir, J.A., Abdel-Motal, U.M., Jondal, M., Wilson, I.A.

(1999) Immunity 10: 51-61

Released	1999-02-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus Vesicular stomatitis Indiana virus (strain Glasgow)
Macromolecule	PROTEIN (BETA-2-MICROGLOBULIN) (protein) PROTEIN (MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I ANTIGEN H-2KB) (protein) PROTEIN (SYNTHETIC GLYCOPEPTIDE RGY8-6H-GAL2) (protein)
Unique Ligands	NAG
Unique branched monosaccharides	FUC, GAL, GLA, NAG

Explore in 3D

1KJM	Download File View File

TAP-A-associated rat MHC class I molecule

Rudolph, M.G., Stevens, J., Speir, J.A., Trowsdale, J., Butcher, G.W., Joly, E., Wilson, I.A.

(2002) J Mol Biol 324: 975-990

Released	2002-12-18
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Rattus norvegicus
Macromolecule	B6 Peptide (protein) RT1 class I histocompatibility antigen, AA alpha chain, heavy chain (protein) beta-2-Microglobulin (protein)
Unique Ligands	SO4

Explore in 3D

1KJV	Download File View File

TAP-B-associated rat MHC class I molecule

Rudolph, M.G., Stevens, J., Speir, J.A., Trowsdale, J., Butcher, G.W., Joly, E., Wilson, I.A.

(2002) J Mol Biol 324: 975-990

Released	2002-12-18
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Rattus norvegicus
Macromolecule	Mature alpha chain of major histocompatibility complex class I antigen (HEAVY CHAIN) (protein) beta-2-microglobulin (protein) peptide NPR (protein)
Unique Ligands	SO4

Explore in 3D

1LDP	Download File View File

CRYSTAL STRUCTURE OF MURINE MHC CLASS I H-2LD WITH A MIXTURE OF BOUND PEPTIDES

Speir, J.A., Wilson, I.A.

(1998) Immunity 8: 553-562

Released	1998-06-17
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Drosophila melanogaster Mus musculus
Macromolecule	MHC CLASS I H-2LD (protein) PEPTIDE (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG, NDG

Explore in 3D

1ZA7	Download File View File

The crystal structure of salt stable cowpea cholorotic mottle virus at 2.7 angstroms resolution.

Bothner, B., Speir, J.A., Qu, C., Willits, D.A., Young, M.J., Johnson, J.E.

(2006) J Virol 80: 3582-3591

Released	2006-03-21
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Cowpea chlorotic mottle virus
Macromolecule	Coat protein (protein)

Explore in 3D

2FRP	Download File View File

Bacteriophage HK97 Expansion Intermediate IV

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	X-RAY DIFFRACTION 7.5 Å
Organisms	Byrnievirus HK97
Macromolecule	Major capsid protein (protein)

Explore in 3D

2FS3	Download File View File

Bacteriophage HK97 K169Y Head I

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	X-RAY DIFFRACTION 4.2 Å
Organisms	Byrnievirus HK97
Macromolecule	Major capsid protein (protein)

Explore in 3D

2FSY	Download File View File

Bacteriophage HK97 Pepsin-treated Expansion Intermediate IV

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Byrnievirus HK97
Macromolecule	major capsid protein (protein)

Explore in 3D

2FT1	Download File View File

Bacteriophage HK97 Head II

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	X-RAY DIFFRACTION 3.9 Å
Organisms	Byrnievirus HK97
Macromolecule	major capsid protein (protein)

Explore in 3D

2FTE	Download File View File

Bacteriophage HK97 Expansion Intermediate IV

Gan, L., Speir, J.A., Conway, J.F., Lander, G., Cheng, N., Firek, B.A., Hendrix, R.W., Duda, R.L., Liljas, L., Johnson, J.E.

(2006) Structure 14: 1655-1665

Released	2006-02-07
Method	ELECTRON MICROSCOPY
Organisms	Byrnievirus HK97
Macromolecule	major capsid protein (protein)

Explore in 3D

2QQP	Download File View File

Crystal Structure of Authentic Providence Virus

Speir, J.A., Taylor, D.J., Johnson, J.E.

(2010) Structure 18: 700-709

Released	2009-01-20
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Providence virus Helicoverpa zea /United States/vFLM1/- synthetic construct
Macromolecule	p81 (protein) RNA (5'-R(UPUPUPU)-3') (nucleic acid)
Unique Ligands	CA

Explore in 3D

3LOB	Download File View File

Crystal Structure of Flock House Virus calcium mutant

Johnson, J.E., Banerjee, M., Speir, J.A., Huang, R.

(2010) J Virol 84: 4737-4746

Released	2010-04-21
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Flock House virus Spodoptera frugiperda
Macromolecule	Coat protein beta (protein) Coat protein gamma (protein) RNA (5'-R(UPUPUAPUPCPUP(P))-3') (nucleic acid)
Unique Ligands	SO4

Explore in 3D

3R0R	Download File View File

The 2.3 A structure of porcine circovirus 2

Khayat, R., Speir, J.A., Johnson, J.E.

(2011) J Virol 85: 7856-7862

Released	2011-06-15
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Porcine circovirus 2
Macromolecule	Porcine circovirus 2 (PCV2) capsid protein (protein)
Unique Ligands	SO4

Explore in 3D

3S6P	Download File View File

Crystal Structure of Helicoverpa Armigera Stunt Virus

Speir, J.A., Chen, Z., Taylor, D.J., Johnson, J.E.

To be published

Released	2012-05-30
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Helicoverpa armigera stunt virus
Macromolecule	Capsid protein (protein)
Unique Ligands	CA, CL

Explore in 3D

4FSJ	Download File View File

Crystal structure of the virus like particle of Flock House virus

Speir, J.A., Chen, Z., Reddy, V.S., Johnson, J.E.

(2012) To be published

Released	2012-08-01
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Flock House virus Spodoptera frugiperda
Macromolecule	Capsid protein Gamma (protein) Capsid protein beta (protein) Random cellular RNA fragments (nucleic acid)
Unique Ligands	CA, CL, EPE

Explore in 3D

4FTB	Download File View File

Crystal structure of the authentic Flock House virus particle

Speir, J.A., Chen, Z., Reddy, V.S., Johnson, J.E.

(2012) To be published

Released	2012-08-01
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Flock House virus
Macromolecule	Capsid protein beta (protein) Capsid protein gamma (protein) Flock House virus genomic RNA (nucleic acid)
Unique Ligands	CA, CL, EPE

Explore in 3D

4FTE	Download File View File

Crystal structure of the D75N mutant capsid of Flock House virus

Speir, J.A., Chen, Z., Reddy, V.S., Johnson, J.E.

(2012) To be published

Released	2012-08-01
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Flock House virus Spodoptera frugiperda
Macromolecule	Capsid protein alpha (protein) Random cellular RNAs (nucleic acid)
Unique Ligands	CA, CL, EPE, SO4

Explore in 3D

4FTS	Download File View File

Crystal structure of the N363T mutant of the Flock House virus capsid

Speir, J.A., Chen, Z., Reddy, V.S., Johnson, J.E.

(2012) To be published

Released	2012-08-01
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Flock House virus Spodoptera frugiperda
Macromolecule	Capsid protein alpha (protein) Random cellular RNAs (nucleic acid)
Unique Ligands	CA, CL, EPE, SO4

1 to 24 of 24 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification