RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Author = "Thirup, S.S."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 22 Structures.

Refinements

Structure Determination Methodology

experimental (22)

Scientific Name of Source Organism

	Homo sapiens (12)
	Bifidobacterium bifidum (3)
	Escherichia coli K-12 (3)
	Escherichia coli str. K-12 substr. DH10B (3)
	Escherichia coli (2)
	Albizia procera (1)
	Escherichia coli DH1 (1)

Taxonomy

	Eukaryota (13)
	Bacteria (9)
	Eukaryota (eukaryotes) (5)

Experimental Method

X-RAY DIFFRACTION (22)

Polymer Entity Type

Protein (22)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (6)
	2.0 - 2.5 (10)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)
	3.5 - 4.0 (2)

Release Date

	2005 - 2009 (5)
	2010 - 2014 (1)
	2015 - 2019 (8)
	2020 - 2024 (8)

Enzyme Classification Name

Hydrolases (8)

Symmetry Type

	Asymmetric (21)
	Cyclic (1)

SCOP Classification

	All beta proteins (7)
	All alpha proteins (9)
	Alpha and beta proteins (a+b) (4)
	Alpha and beta proteins (a/b) (6)
	Artifacts (1)
	Small proteins (1)

AllSelected

1 to 22 of 22 Structures

Page 1 of 1

Sort by

Explore in 3D

3G2S	Download File View File

VHS Domain of human GGA1 complexed with SorLA C-terminal Peptide

Cramer, J.F., Behrens, M.A., Gustafsen, C., Oliveira, C.L.P., Pedersen, J.S., Madsen, P., Petersen, C.M., Thirup, S.S.

(2010) Traffic 11: 259-273

Released	2009-12-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosylation factor-binding protein GGA1 (protein) C-terminal fragment of Sortilin-related receptor (protein)
Unique Ligands	HEZ

Explore in 3D

3G2T	Download File View File

VHS Domain of human GGA1 complexed with SorLA C-terminal Phosphopeptide

Cramer, J.F., Behrens, M.A., Gustafsen, C., Oliveira, C.L.P., Pedersen, J.S., Madsen, P., Petersen, C.M., Thirup, S.S.

(2010) Traffic 11: 259-273

Released	2009-12-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosylation factor-binding protein GGA1 (protein) Phosphorylated C-terminal fragment of Sortilin-related receptor (protein)
Unique Ligands	IOD

Explore in 3D

3G2U	Download File View File

VHS Domain of human GGA1 complexed with Sotilin C-terminal Peptide

Cramer, J.F., Behrens, M.A., Gustafsen, C., Oliveira, C.L.P., Pedersen, J.S., Madsen, P., Petersen, C.M., Thirup, S.S.

(2010) Traffic 11: 259-273

Released	2009-12-15
Method	X-RAY DIFFRACTION 2.301 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosylation factor-binding protein GGA1 (protein) C-terminal fragment of Sortilin (protein)
Unique Ligands	IOD

Explore in 3D

3G2V	Download File View File

VHS Domain of human GGA1 complexed with Sotilin C-terminal Phosphopeptide

Cramer, J.F., Behrens, M.A., Gustafsen, C., Oliveira, C.L.P., Pedersen, J.S., Madsen, P., Petersen, C.M., Thirup, S.S.

(2010) Traffic 11: 259-273

Released	2009-12-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosylation factor-binding protein GGA1 (protein) C-terminal fragment of Sortilin (protein)
Unique Ligands	IOD

Explore in 3D

3G2W	Download File View File

VHS Domain of human GGA1 complexed with a DXXLL hinge peptide

Cramer, J.F., Behrens, M.A., Gustafsen, C., Oliveira, C.L.P., Pedersen, J.S., Madsen, P., Petersen, C.M., Thirup, S.S.

(2010) Traffic 11: 259-273

Released	2009-12-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosylation factor-binding protein GGA1 (protein) Internal peptide of the Hinge domain of ADP-ribosylation factor-binding protein GGA1 (protein)

Explore in 3D

4PC1	Download File View File

Elongation Factor Tu:Ts complex with a bound phosphate

Thirup, S.S.

(2015) J Struct Biol 191: 10-21

Released	2015-05-06
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli Escherichia coli str. K-12 substr. DH10B
Macromolecule	Elongation factor Ts (protein) Elongation factor Tu (protein)
Unique Ligands	GOL, PB, PO4, TRS

Explore in 3D

4PC2	Download File View File

Elongation factor Tu:Ts complex with a bound GDP

Thirup, S.S.

(2015) J Struct Biol 191: 10-21

Released	2015-05-06
Method	X-RAY DIFFRACTION 2.1999 Å
Organisms	Escherichia coli Escherichia coli str. K-12 substr. DH10B
Macromolecule	Elongation factor Ts (protein) Elongation factor Tu (protein)
Unique Ligands	CL, GDP, GOL

Explore in 3D

4PC3	Download File View File

Elongation factor Tu:Ts complex with partially bound GDP

Thirup, S.S.

(2015) J Struct Biol 191: 10-21

Released	2015-05-06
Method	X-RAY DIFFRACTION 1.8313 Å
Organisms	Escherichia coli K-12
Macromolecule	Elongation factor Ts (protein) Elongation factor Tu 1 (protein)
Unique Ligands	GDP, GOL

Explore in 3D

4PC6	Download File View File

Elongation factor Tu:Ts complex with bound GDPNP

Thirup, S.S.

(2015) J Struct Biol 191: 10-21

Released	2015-05-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli DH1 Escherichia coli str. K-12 substr. DH10B
Macromolecule	Elongation factor Ts (protein) Elongation factor Tu (protein)
Unique Ligands	GNP, GOL

Explore in 3D

4PC7	Download File View File

Elongation factor Tu:Ts complex in a near GTP conformation.

Thirup, S.S.

(2015) J Struct Biol 191: 10-21

Released	2015-05-06
Method	X-RAY DIFFRACTION 3.6003 Å
Organisms	Escherichia coli K-12
Macromolecule	Elongation factor Ts (protein) Elongation factor Tu 1 (protein)
Unique Ligands	GNP, MG, PUL

Explore in 3D

4PO7	Download File View File

Structure of the Sortilin:neurotensin complex at excess neurotensin concentration

Quistgaard, E.M., Groftehauge, M.K., Thirup, S.S.

(2014) Protein Sci 23: 1291-1300

Released	2014-07-23
Method	X-RAY DIFFRACTION 2.66 Å
Organisms	Homo sapiens
Macromolecule	Neurotensin/neuromedin N (protein) Sortilin (protein)
Unique Ligands	NAG, PG4
Unique branched monosaccharides	BMA, NAG

Explore in 3D

5OCA	Download File View File

PCSK9:Fab Complex with Dextran Sulfate

Thirup, S.S., Vilstrup, J.P.

(2017) Nat Commun 8: 503-503

Released	2017-09-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Fab from LDLR competitive antibody: Heavy chain (protein) Fab from LDLR competitive antibody: Light chain (protein) Proprotein convertase subtilisin/kexin type 9 (protein)
Unique Ligands	NA
Unique branched monosaccharides	TWA, TWD

Explore in 3D

6EHO	Download File View File

Dimer of the Sortilin Vps10p domain at low pH

Thirup, S.S., Quistgaard, E.H., Januliene, D., Andersen, J.L., Nielsen, J.A.

(2017) Structure 25: 1809-1819.e3

Released	2017-12-06
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Homo sapiens
Macromolecule	Sortilin (protein)
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

6EZE	Download File View File

The open conformation of E.coli Elongation Factor Tu in complex with GDPNP.

Johansen, J.S., Blaise, M., Thirup, S.S.

(2018) Nucleic Acids Res 46: 8641-8650

Released	2018-08-22
Method	X-RAY DIFFRACTION 2.47 Å
Organisms	Escherichia coli K-12
Macromolecule	Elongation factor Tu 2 (protein)
Unique Ligands	GNP, GOL, MG, PEG, SO4

Explore in 3D

6QUB	Download File View File

Truncated beta-galactosidase III from Bifidobacterium bifidum in complex with galactose

Thirup, S.S., Nielsen, J.A., Andersen, J.L., Alsarraf, H., Blaise, M.

To be published

Released	2020-03-18
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Bifidobacterium bifidum
Macromolecule	Beta-galactosidase (protein)
Unique Ligands	CA, GAL

Explore in 3D

6QUC	Download File View File

Truncated beta-galactosidase III from Bifidobacterium bifidum

Thirup, S.S., Nielsen, J.A., Andersen, J.L., Alsarraf, H., Blaise, M.

To be published

Released	2020-03-18
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bifidobacterium bifidum
Macromolecule	Beta-galactosidase (protein)
Unique Ligands	CA, IMD

Explore in 3D

6QUD	Download File View File

2-deoxy-galactose reaction intermediate of a Truncated beta-galactosidase III from Bifidobacterium bifidum

Thirup, S.S., Nielsen, J.A., Andersen, J.L., Alsarraf, H., Blaise, M.

To be published

Released	2020-03-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bifidobacterium bifidum
Macromolecule	Beta-galactosidase (protein)
Unique Ligands	2DG, CA

Explore in 3D

6TPT	Download File View File

Crystal structures of FNIII domain three and four of the human leucocyte common antigen-related protein, LAR

Vilstrup, J.P., Thirup, S.S., Simonsen, A., Birkefeldt, T., Strandbygaard, D.

(2020) Acta Crystallogr D Struct Biol 76: 406-417

Released	2020-05-13
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	Receptor-type tyrosine-protein phosphatase F (protein)

Explore in 3D

6TPU	Download File View File

Crystal structures of FNIII domain three and four of the human leucocyte common antigen-related protein, LAR

Vilstrup, J.P., Thirup, S.S., Simonsen, A., Birkefeldt, T., Strandbygaard, D.

(2020) Acta Crystallogr D Struct Biol 76: 406-417

Released	2020-05-13
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Receptor-type tyrosine-protein phosphatase F (protein)
Unique Ligands	CL

Explore in 3D

6TPV	Download File View File

Crystal structures of FNIII domain one and two of the human leucocyte common antigen-related protein, LAR

Vilstrup, J.P., Thirup, S.S., Simonsen, A., Birkefeldt, T., Strandbygaard, D.

(2020) Acta Crystallogr D Struct Biol 76: 406-417

Released	2020-05-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Receptor-type tyrosine-protein phosphatase F (protein)
Unique Ligands	IMD

Explore in 3D

6TPW	Download File View File

Crystal structures of FNIII domain one through four of the human leucocyte common antigen-related protein ( LAR)

Vilstrup, J.P., Thirup, S.S., Simonsen, A., Birkefeldt, T., Strandbygaard, D.

(2020) Acta Crystallogr D Struct Biol 76: 406-417

Released	2020-05-13
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Receptor-type tyrosine-protein phosphatase F (protein)
Unique Ligands	SO4