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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

QUERY: Structure Author = "Wilson, D.N."

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This query matches 131 Structures.

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1Y69	Download File View File

RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans

Wilson, D.N., Schluenzen, F., Harms, J.M., Yoshida, T., Ohkubo, T., Albrecht, R., Buerger, J., Kobayashi, Y., Fucini, P.

(2005) EMBO J 24: 251-260

Released	2005-03-01
Method	X-RAY DIFFRACTION 3.33 Å
Organisms	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 Escherichia coli K-12
Macromolecule	50S ribosomal protein L16 (protein) 50S ribosomal protein L27 (protein) Ribosome-recycling factor (protein) 23S ribosomal RNA (nucleic acid) 5S ribosomal RNA (nucleic acid)

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2D3O	Download File View File

Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans

Schluenzen, F., Wilson, D.N., Hansen, H.A., Tian, P., Harms, J.M., McInnes, S.J., Albrecht, R., Buerger, J., Wilbanks, S.M., Fucini, P.

(2005) Structure 13: 1685-1694

Released	2005-12-06
Method	X-RAY DIFFRACTION 3.35 Å
Organisms	Deinococcus radiodurans
Macromolecule	50S RIBOSOMAL PROTEIN L23 (protein) 50S RIBOSOMAL PROTEIN L24 (protein) 50S RIBOSOMAL PROTEIN L29 (protein) Trigger Factor (protein) 23S RIBOSOMAL RNA (nucleic acid)

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2E5L	Download File View File

A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine- Dalgarno interaction

Kaminishi, T., Wilson, D.N., Takemoto, C., Harms, J.M., Kawazoe, M., Schluenzen, F., Hanawa-Suetsugu, K., Shirouzu, M., Fucini, P., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2007) Structure 15: 289-297

Released	2007-05-15
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Thermus thermophilus synthetic construct
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 2
Unique Ligands	ZN

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2OM7	Download File View File

Structural Basis for Interaction of the Ribosome with the Switch Regions of GTP-bound Elongation Factors

Connell, S.R., Wilson, D.N., Rost, M., Schueler, M., Giesebrecht, J., Dabrowski, M., Mielke, T., Fucini, P., Spahn, C.M.T.

(2007) Mol Cell 25: 751-764

Released	2008-01-15
Method	ELECTRON MICROSCOPY 7.3 Å
Organisms	Thermus thermophilus
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 10

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2R1C	Download File View File

Coordinates of the thermus thermophilus ribosome binding factor A (RbfA) homology model as fitted into the CRYO-EM map of a 30S-RBFA complex

Datta, P.P., Wilson, D.N., Kawazoe, M., Swami, N.K., Kaminishi, T., Sharma, M.R., Booth, T.M., Takemoto, C., Fucini, P., Yokoyama, S., Agrawal, R.K.

(2007) Mol Cell 28: 434-445

Released	2008-03-18
Method	ELECTRON MICROSCOPY 12.5 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Ribosome-binding factor A (protein)

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2R1G	Download File View File

Coordinates of the thermus thermophilus 30S components neighboring RbfA as obtained by fitting into the CRYO-EM map of A 30S-RBFA complex

Datta, P.P., Wilson, D.N., Kawazoe, M., Swami, N.K., Kaminishi, T., Sharma, M.R., Booth, T.M., Takemoto, C., Fucini, P., Yokoyama, S., Agrawal, R.K.

(2007) Mol Cell 28: 434-445

Released	2008-03-18
Method	ELECTRON MICROSCOPY 12.5 Å
Organisms	Thermus thermophilus HB27 synthetic construct
Macromolecule	Unique protein chains: 3 Unique nucleic acid chains: 7

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2ZJP	Download File View File

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Harms, J.M., Wilson, D.N., Schluenzen, F., Connell, S.R., Stachelhaus, T., Zaborowska, Z., Spahn, C.M.T., Fucini, P.

(2008) Mol Cell 30: 26

Released	2008-06-17
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Deinococcus radiodurans Streptomyces actuosus
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 2
Unique Ligands	MG, NO1, ZN

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2ZJQ	Download File View File

Interaction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunit

Harms, J.M., Wilson, D.N., Schluenzen, F., Connell, S.R., Stachelhaus, T., Zaborowska, Z., Spahn, C.M.T., Fucini, P.

(2008) Mol Cell 30: 26-38

Released	2008-06-17
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Deinococcus radiodurans
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 2

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2ZJR	Download File View File

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Harms, J.M., Wilson, D.N., Schluenzen, F., Connell, S.R., Stachelhaus, T., Zaborowska, Z., Spahn, C.M.T., Fucini, P.

(2008) Mol Cell 30: 26-38

Released	2008-06-17
Method	X-RAY DIFFRACTION 2.91 Å
Organisms	Deinococcus radiodurans
Macromolecule	Unique protein chains: 28 Unique nucleic acid chains: 2
Unique Ligands	MG

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2ZM6	Download File View File

Crystal structure of the Thermus thermophilus 30S ribosomal subunit

Kaminishi, T., Wang, H., Kawazoe, M., Ishii, R., Schluenzen, F., Hanawa-Suetsugu, K., Wilson, D.N., Nomura, M., Takemoto, C., Shirouzu, M., Fucini, P., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2009-04-14
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Thermus thermophilus
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	ZN

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3CF5	Download File View File

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Harms, J.M., Wilson, D.N., Schluenzen, F., Connell, S.R., Stachelhaus, T., Zaborowska, Z., Spahn, C.M.T., Fucini, P.

(2008) Mol Cell 30: 26

Released	2008-06-17
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Deinococcus radiodurans Streptomyces azureus
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 2
Unique Ligands	MG

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3DEG	Download File View File

Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP

Connell, S.R., Topf, M., Qin, Y., Wilson, D.N., Mielke, T., Fucini, P., Nierhaus, K.H., Spahn, C.M.T.

(2008) Nat Struct Mol Biol 15: 910-915

Released	2008-08-19
Method	ELECTRON MICROSCOPY 10.9 Å
Organisms	Escherichia coli Escherichia coli K-12
Macromolecule	Unique protein chains: 3 Unique nucleic acid chains: 8

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3DLL	Download File View File

The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioning

Wilson, D.N., Schluenzen, F., Harms, J.M., Starosta, A.L., Connell, S.R., Fucini, P.

(2008) Proc Natl Acad Sci U S A 105: 13339-13344

Released	2008-09-16
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Deinococcus radiodurans
Macromolecule	Unique protein chains: 28 Unique nucleic acid chains: 2
Unique Ligands	MG, ZLD, ZN

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3IZD	Download File View File

Model of the large subunit RNA expansion segment ES27L-out based on a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome. 3IZD is a small part (an expansion segment) which is in an alternative conformation to what is in already 3IZF.

Armache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R.

(2010) Proc Natl Acad Sci U S A 107: 19748-19753

Released	2010-12-01
Method	ELECTRON MICROSCOPY 8.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	rRNA expansion segment ES27L in an "out" conformation (nucleic acid)

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3J25	Download File View File

Structural basis for TetM-mediated tetracycline resistance

Doenhoefer, A., Franckenberg, S., Wickles, S., Berninghausen, O., Beckmann, R., Wilson, D.N.

(2012) Proc Natl Acad Sci U S A 109: 16900-16905

Released	2012-10-17
Method	ELECTRON MICROSCOPY 7.2 Å
Organisms	Enterococcus faecalis
Macromolecule	Tetracycline resistance protein tetM (protein)
Unique Ligands	GCP

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3J5L	Download File View File

Structure of the E. coli 50S subunit with ErmBL nascent chain

Arenz, S., Ramu, H., Gupta, P., Berninghausen, O., Beckmann, R., Vazquez-Laslop, N., Mankin, A.S., Wilson, D.N.

(2014) Nat Commun 5: 3501-3501

Released	2014-03-26
Method	ELECTRON MICROSCOPY 6.6 Å
Organisms	Escherichia coli K-12 Streptococcus sanguinis
Macromolecule	Unique protein chains: 30 Unique nucleic acid chains: 4
Unique Ligands	ERY, UNL

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3J7Z	Download File View File

Structure of the E. coli 50S subunit with ErmCL nascent chain

Arenz, S., Meydan, S., Starosta, A.L., Berninghausen, O., Beckmann, R., Vazquez-Laslop, N., Wilson, D.N.

(2014) Mol Cell 56: 446-452

Released	2014-10-22
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Escherichia coli K-12 Staphylococcus aureus
Macromolecule	Unique protein chains: 32 Unique nucleic acid chains: 3
Unique Ligands	ERY

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3J9W	Download File View File

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Sohmen, D., Chiba, S., Shimokawa-Chiba, N., Innis, C.A., Berninghausen, O., Beckmann, R., Ito, K., Wilson, D.N.

(2015) Nat Commun 6: 6941-6941

Released	2015-04-29
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 5

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3J9Y	Download File View File

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Arenz, S., Nguyen, F., Beckmann, R., Wilson, D.N.

(2015) Proc Natl Acad Sci U S A 112: 5401-5406

Released	2015-04-15
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Enterococcus faecalis Escherichia coli
Macromolecule	Unique protein chains: 53 Unique nucleic acid chains: 5

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4PSL	Download File View File

Crystal structure of pfuThermo-DBP-RP1 (crystal form I)

Gahlei, H., von Moeller, H., Eppers, D., Sohmen, D., Wilson, D.N., Loll, B., Wahl, M.C.

(2014) Nucleic Acids Res 42: 6698-6708

Released	2014-04-30
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	ssDNA binding protein (protein)
Unique Ligands	SO4

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4UE4	Download File View File

Structural basis for targeting and elongation arrest of Bacillus signal recognition particle

Beckert, B., Kedrov, A., Sohmen, D., Kempf, G., Wild, K., Sinning, I., Stahlberg, H., Wilson, D.N., Beckmann, R.

(2015) Nat Struct Mol Biol 22: 767

Released	2015-09-09
Method	ELECTRON MICROSCOPY 7 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	FTSQ SIGNAL SEQUENCE (protein) SIGNAL RECOGNITION PARTICLE PROTEIN (protein) 6S RNA (nucleic acid)

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4UE5	Download File View File

Structural basis for targeting and elongation arrest of Bacillus signal recognition particle

Beckert, B., Kedrov, A., Sohmen, D., Kempf, G., Wild, K., Sinning, I., Stahlberg, H., Wilson, D.N., Beckmann, R.

(2015) Nat Struct Mol Biol 22: 767

Released	2015-09-09
Method	ELECTRON MICROSCOPY 9 Å
Organisms	Canis lupus familiaris
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 1

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4V5H	Download File View File

E.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.

Seidelt, B., Innis, C.A., Wilson, D.N., Gartmann, M., Armache, J., Villa, E., Trabuco, L.G., Becker, T., Mielke, T., Schulten, K., Steitz, T.A., Beckmann, R.

(2009) Science 326: 1412-1415

Released	2014-07-09
Method	ELECTRON MICROSCOPY 5.8 Å
Organisms	Escherichia coli synthetic construct
Macromolecule	Unique protein chains: 51 Unique nucleic acid chains: 5

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4V5M	Download File View File

tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)

Ratje, A.H., Loerke, J., Mikolajka, A., Bruenner, M., Hildebrand, P.W., Starosta, A.L., Doenhoefer, A., Connell, S.R., Fucini, P., Mielke, T., Whitford, P.C., Onuchic, J.N., Yu, Y., Sanbonmatsu, K.Y., Hartmann, R.K., Penczek, P.A., Wilson, D.N., Spahn, C.M.T.

(2010) Nature 468: 713

Released	2014-07-09
Method	ELECTRON MICROSCOPY 7.8 Å
Organisms	Escherichia coli K-12 Thermus thermophilus HB8
Macromolecule	Unique protein chains: 52 Unique nucleic acid chains: 5
Unique Ligands	FUA, GDP

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4V5N	Download File View File

tRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST)

(2010) Nature 468: 713

Released	2014-07-09
Method	ELECTRON MICROSCOPY 7.6 Å
Organisms	Escherichia coli K-12 Thermus thermophilus HB8
Macromolecule	Unique protein chains: 52 Unique nucleic acid chains: 5
Unique Ligands	FUA, GDP