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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Yang, X."

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Search Summary

This query matches 315 Structures.

Refinements

Structure Determination Methodology

experimental (315)

Scientific Name of Source Organism

	Homo sapiens (142)
	Mus musculus (21)
	Mycolicibacterium smegmatis MC2 155 (15)
	synthetic construct (11)
	Human immunodeficiency virus 1 (10)
	Pseudomonas aeruginosa PAO1 (10)
	Cannabis sativa (9)
	Bacillus subtilis (8)
	Streptomyces coelicolor A3(2) (8)
	Mycobacterium tuberculosis H37Rv (7)

More...

Taxonomy

	Eukaryota (198)
	Bacteria (109)
	Riboviria (24)
	other sequences (11)
	Duplodnaviria (10)
	Eukaryota (eukaryotes) (2)
	Riboviria (RNA viruses and viroids) (1)

Experimental Method

	X-RAY DIFFRACTION (217)
	ELECTRON MICROSCOPY (84)
	SOLUTION NMR (14)

Polymer Entity Type

	Protein (309)
	DNA (26)
	RNA (16)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (65)
	2.0 - 2.5 (68)
	2.5 - 3.0 (72)
	3.0 - 3.5 (49)
	3.5 - 4.0 (27)
	4.0 - 4.5 (10)
	> 4.5 (4)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (14)
	2005 - 2009 (63)
	2010 - 2014 (25)
	2015 - 2019 (72)
	2020 - 2024 (120)
	2025 - 2029 (19)

Enzyme Classification Name

	Transferases (45)
	Hydrolases (26)
	Lyases (12)
	Isomerases (10)
	Oxidoreductases (1)

Membrane Protein Annotation

	PDBTM (51)
	MemProtMD (33)
	mpstruc (29)
	OPM (23)

Symmetry Type

	Asymmetric (181)
	Cyclic (128)
	Dihedral (10)
	Helical (9)
	Icosahedral (1)
	Octahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (48)
	All beta proteins (23)
	Alpha and beta proteins (a/b) (27)
	Artifacts (27)
	All alpha proteins (20)

AllSelected

1 to 25 of 315 Structures

Page 1 of 13

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1AQZ \| pdb_00001aqz	Download File View File

CRYSTAL STRUCTURE OF A HIGHLY SPECIFIC ASPERGILLUS RIBOTOXIN, RESTRICTOCIN

Yang, X., Moffat, K.

(1996) Structure 4: 837-852

Released	1997-11-12
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Aspergillus restrictus
Macromolecule	RESTRICTOCIN (protein)
Unique Ligands	PO4

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1CX5 \| pdb_00001cx5	Download File View File

ANTISENSE DNA/RNA HYBRID CONTAINING MODIFIED BACKBONE

Yang, X., Han, X., Cross, C., Sanghvi, Y., Gao, X.

(1999) Biochemistry 38: 12586-12596

Released	1999-09-14
Method	SOLUTION NMR
Macromolecule	5'-D(CPGPCPGPTPT(MMT)PTPGPCPGPC) (nucleic acid) 5'-R(GPCPGPCPAPAPAPAPCPGPCPG) (nucleic acid)

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1JBR \| pdb_00001jbr	Download File View File

Crystal Structure of the Ribotoxin Restrictocin and a 31-mer SRD RNA Inhibitor

Yang, X., Gerczei, T., Glover, L., Correll, C.C.

(2001) Nat Struct Biol 8: 968-973

Released	2001-10-26
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Aspergillus restrictus
Macromolecule	Restrictocin (protein) 31-mer SRD RNA analog (nucleic acid) 5'-R(GPCPGPCPUPCPCPUPCPAPGPUPAPCPGPAPGP(A23))-3' (nucleic acid) 5'-R(GPGPAPAPCPCPGPGPAPGPCPGP*C)-3' (nucleic acid)
Unique Ligands	K

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1JBS \| pdb_00001jbs	Download File View File

Crystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analog

Yang, X., Gerczei, T., Glover, L., Correll, C.C.

(2001) Nat Struct Biol 8: 968-973

Released	2001-10-26
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Aspergillus restrictus
Macromolecule	restrictocin (protein) 29-mer sarcin/ricin domain RNA analog (nucleic acid)
Unique Ligands	K

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1JBT \| pdb_00001jbt	Download File View File

CRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOG

Yang, X., Gerczei, T., Glover, L., Correll, C.C.

(2001) Nat Struct Biol 8: 968-973

Released	2001-10-26
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Aspergillus restrictus
Macromolecule	RESTRICTOCIN (protein) 29-MER SARCIN/RICIN DOMAIN RNA ANALOG (nucleic acid)
Unique Ligands	K

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1K8J \| pdb_00001k8j	Download File View File

NMR STRUCTURE OF THE CK14 DNA DUPLEX: A PORTION OF THE KNOWN NF-kB SEQUENCE CK1

Volk, D.E., Yang, X., Fennewald, S.M., King, D.J., Bassett, S.E., Venkitachalam, S., Herzog, N., Luxon, B.A., Gorenstein, D.G.

(2002) Bioorg Chem 30: 396-419

Released	2003-04-15
Method	SOLUTION NMR
Macromolecule	FIRST STRAND OF CK14 DNA DUPLEX (nucleic acid) SECOND STRAND OF CK14 DNA DUPLEX (nucleic acid)

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1K8L \| pdb_00001k8l	Download File View File

XBY6: An analog of CK14 containing 6 dithiophosphate groups

Volk, D.E., Yang, X., Fennewald, S.M., King, D.J., Bassett, S.E., Venkitachalam, S., Herzog, N., Luxon, B.A., Gorenstein, D.G.

(2002) Bioorg Chem 30: 396-419

Released	2003-04-15
Method	SOLUTION NMR
Macromolecule	FIRST STRAND OF CK14 DNA DUPLEX (nucleic acid) SECOND STRAND OF CK14 DNA DUPLEX (nucleic acid)

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1K8N \| pdb_00001k8n	Download File View File

NMR structure of the XBY2 DNA duplex, an analog of CK14 containing phosphorodithioate groups at C22 and C24

Volk, D.E., Yang, X., Fennewald, S.M., King, D.J., Bassett, S.E., Venkitachalam, S., Herzog, N., Luxon, B.A., Gorenstein, D.G.

(2002) Bioorg Chem 30: 396-419

Released	2003-04-15
Method	SOLUTION NMR
Macromolecule	FIRST STRAND OF CK14 DNA DUPLEX (nucleic acid) SECOND STRAND OF CK14 DNA DUPLEX (nucleic acid)

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1LI4 \| pdb_00001li4	Download File View File

Human S-adenosylhomocysteine hydrolase complexed with neplanocin

Yang, X., Hu, Y., Yin, D.H., Turner, M.A., Wang, M., Borchardt, R.T., Howell, P.L., Kuczera, K., Schowen, R.L.

(2003) Biochemistry 42: 1900-1909

Released	2003-05-20
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Homo sapiens
Macromolecule	S-adenosylhomocysteine hydrolase (protein)
Unique Ligands	IPA, NAD, NOC

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1NBS \| pdb_00001nbs	Download File View File

Crystal structure of the specificity domain of Ribonuclease P RNA

Krasilnikov, A.S., Yang, X., Pan, T., Mondragon, A.

(2003) Nature 421: 760-764

Released	2003-02-18
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Bacillus subtilis
Macromolecule	RIBONUCLEASE P RNA (nucleic acid)
Unique Ligands	MG, PB

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1NOQ \| pdb_00001noq	Download File View File

e-motif structure

Zheng, M., Huang, X., Smith, G.K., Yang, X., Gao, X.

(1996) J Mol Biology 264: 323-336

Released	2003-02-11
Method	SOLUTION NMR
Macromolecule	5'-D(CPCPGPCPCPG)-3' (nucleic acid)

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1R5K \| pdb_00001r5k	Download File View File

Human Estrogen Receptor alpha Ligand-Binding Domain In Complex With GW5638

Wu, Y.-L., Yang, X., Ren, Z., McDonnell, D.P., Norris, J.D., Willson, T.M., Greene, G.L.

(2005) Mol Cell 18: 413-424

Released	2004-11-23
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Estrogen receptor (protein)
Unique Ligands	GW5

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1RKT \| pdb_00001rkt	Download File View File

Crystal structure of yfiR, a putative transcriptional regulator from Bacillus subtilis

Anderson, W.F., Rajan, S.S., Yang, X., Midwest Center for Structural Genomics (MCSG)

(2006) Proteins 65: 255-257

Released	2004-04-13
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Bacillus subtilis
Macromolecule	protein yfiR (protein)
Unique Ligands	UNX

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1RXQ \| pdb_00001rxq	Download File View File

YfiT from Bacillus subtilis is a probable metal-dependent hydrolase with an unusual four-helix bundle topology

Rajan, S.S., Yang, X., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)

(2004) Biochemistry 43: 15472-15479

Released	2004-07-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacillus subtilis
Macromolecule	yfiT (protein)
Unique Ligands	ALA, GLU, GLY, NI, SER, THR

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1TO9 \| pdb_00001to9	Download File View File

Crystal structure of THI-4 protein from Bacillus subtilis

Rajan, S.S., Shuvalova, L., Yang, X., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2004-08-10
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bacillus subtilis
Macromolecule	THI-4 protein (protein)
Unique Ligands	HMH

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1U8X \| pdb_00001u8x	Download File View File

CRYSTAL STRUCTURE OF GLVA FROM BACILLUS SUBTILIS, A METAL-REQUIRING, NAD-DEPENDENT 6-PHOSPHO-ALPHA-GLUCOSIDASE

Rajan, S.S., Yang, X., Collart, F., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)

(2004) Structure 12: 1619-1629

Released	2004-08-24
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Bacillus subtilis
Macromolecule	Maltose-6'-phosphate glucosidase (protein)
Unique Ligands	G6P, MN, NAD

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1VR4 \| pdb_00001vr4	Download File View File

Crystal Structure of MCSG TArget APC22750 from Bacillus cereus

Yang, X., Brunzelle, J.S., McNamara, L.K., Minasov, G., Shuvalova, L., Collart, F.R., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2005-02-08
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Bacillus cereus ATCC 14579
Macromolecule	hypothetical protein APC22750 (protein)

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1Y2I \| pdb_00001y2i	Download File View File

Crystal Structure of MCSG Target APC27401 from Shigella flexneri

Brunzelle, J.S., Minasov, G., Yang, X., Shuvalova, L., Collart, F.R., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2005-01-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Shigella flexneri 2a str. 2457T
Macromolecule	Hypothetical Protein S0862 (protein)

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1ZV4 \| pdb_00001zv4	Download File View File

Structure of the Regulator of G-Protein Signaling 17 (RGSZ2)

Schoch, G.A., Jansson, A., Elkins, J.M., Haroniti, A., Niesen, F.H., Bunkoczi, G., Lee, W.H., Turnbull, A.P., Yang, X., Sundstrom, M., Arrowsmith, C., Edwards, A., Marsden, B., Gileadi, O., Ball, L., von Delft, F., Doyle, D.A., Structural Genomics Consortium (SGC)

(2008) Proc Natl Acad Sci U S A 105: 6457-6462

Released	2005-06-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Regulator of G-protein signaling 17 (protein)

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2A4G \| pdb_00002a4g	Download File View File

Hepatitis C Protease NS3-4A serine protease with Ketoamide Inhibitor SCH225724 Bound

Arasappan, A., Njoroge, F.G., Chan, T.Y., Bennett, F., Bogen, S.L., Chen, K., Gu, H., Hong, L., Jao, E., Liu, Y.T., Lovey, R.G., Parekh, T., Pike, R.E., Pinto, P., Santhanam, B., Venkatraman, S., Vaccaro, H., Wang, H., Yang, X., Zhu, Z., Mckittrick, B., Saksena, A.K., Girijavallabhan, V., Pichardo, J., Butkiewicz, N., Ingram, R., Malcolm, B., Prongay, A.J., Yao, N., Marten, B., Madison, V., Kemp, S., Levy, O., Lim-Wilby, M., Tamura, S., Ganguly, A.K.

(2005) Bioorg Med Chem Lett 15: 4180-4184

Released	2006-07-04
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Hepacivirus hominis Hepatitis C virus subtype 1b
Macromolecule	NS3 protease/helicase (protein) NS4a peptide (protein)
Unique Ligands	UNH, ZN

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2ARH \| pdb_00002arh	Download File View File

Crystal Structure of a Protein of Unknown Function AQ1966 from Aquifex aeolicus VF5

Qiu, Y., Kim, Y., Yang, X., Collart, F., Joachimiak, A., Kossiakoff, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2005-10-04
Method	X-RAY DIFFRACTION 2.46 Å
Organisms	Aquifex aeolicus
Macromolecule	hypothetical protein aq_1966 (protein)
Unique Ligands	CA, SE, SO4

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2B05 \| pdb_00002b05	Download File View File

Crystal Structure of 14-3-3 gamma in complex with a phosphoserine peptide

Papagrigoriou, E., Elkins, J., Arrowsmith, C., Zhao, Y., Debreczeni, E.J., Edwards, A., Weigelt, J., Doyle, D., von Delft, F., Turnbull, A., Yang, X.

To be published

Released	2005-10-11
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens
Macromolecule	14-3-3 protein gamma (protein) peptide (protein)

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2BMJ \| pdb_00002bmj	Download File View File

GTPase like domain of Centaurin Gamma 1 (Human)

Yang, X., Elkins, J.M., Soundararajan, M., Arrowsmith, C., Edwards, A., Sundstrom, M., Doyle, D.A., Structural Genomics Consortium (SGC)

(2007) Biochem J 401: 679

Released	2005-04-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	CENTAURIN GAMMA 1 (protein)

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2BQ0 \| pdb_00002bq0	Download File View File

14-3-3 Protein Beta (Human)

Yang, X., Elkins, J.M., Fedorov, O., Longman, E.J., Sobott, L., Ball, L.J., Sundstrom, M., Arrowsmith, C., Edwards, A., Doyle, D.A.

(2006) Proc Natl Acad Sci U S A 103: 17237

Released	2005-05-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	14-3-3 BETA/ALPHA (protein)

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2BR9 \| pdb_00002br9	Download File View File

14-3-3 Protein Epsilon (Human) Complexed to Peptide

Yang, X., Elkins, J.M., Soundararajan, M., Fedorov, O., Sundstrom, M., Edwards, A., Arrowsmith, C., Doyle, D.A.

(2006) Proc Natl Acad Sci U S A 103: 17237

Released	2005-05-12
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	14-3-3 PROTEIN EPSILON (protein) CONSENSUS PEPTIDE FOR 14-3-3 PROTEINS (protein)

1 to 25 of 315 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AQZ | pdb_00001aqz

1CX5 | pdb_00001cx5

1JBR | pdb_00001jbr

1JBS | pdb_00001jbs

1JBT | pdb_00001jbt

1K8J | pdb_00001k8j

1K8L | pdb_00001k8l

1K8N | pdb_00001k8n

1LI4 | pdb_00001li4

1NBS | pdb_00001nbs

1NOQ | pdb_00001noq

1R5K | pdb_00001r5k

1RKT | pdb_00001rkt

1RXQ | pdb_00001rxq

1TO9 | pdb_00001to9

1U8X | pdb_00001u8x

1VR4 | pdb_00001vr4

1Y2I | pdb_00001y2i

1ZV4 | pdb_00001zv4

2A4G | pdb_00002a4g

2ARH | pdb_00002arh

2B05 | pdb_00002b05

2BMJ | pdb_00002bmj

2BQ0 | pdb_00002bq0

2BR9 | pdb_00002br9