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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Yonath, A."

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Search Summary

This query matches 81 Structures.

Refinements

Structure Determination Methodology

experimental (81)

Scientific Name of Source Organism

	Deinococcus radiodurans (26)
	Staphylococcus aureus (12)
	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 (11)
	Leishmania major strain Friedlin (7)
	Pseudomonas aeruginosa (6)
	Thermus thermophilus (6)
	Staphylococcus aureus subsp. aureus NCTC 8325 (5)
	Giardia lamblia ATCC 50803 (3)
	Leishmania donovani (3)
	Trypanosoma brucei brucei (2)

More...

Taxonomy

	Bacteria (65)
	Eukaryota (17)

Experimental Method

	X-RAY DIFFRACTION (47)
	ELECTRON MICROSCOPY (34)

Polymer Entity Type

	RNA (79)
	Protein (72)

Refinement Resolution (Å)

	2.0 - 2.5 (7)
	2.5 - 3.0 (19)
	3.0 - 3.5 (21)
	3.5 - 4.0 (29)
	4.0 - 4.5 (1)
	> 4.5 (4)

Release Date

	1975 - 1979 (1)
	1980 - 1984 (1)
	2000 - 2004 (21)
	2005 - 2009 (9)
	2010 - 2014 (4)
	2015 - 2019 (26)
	2020 - 2024 (17)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (1)
	Isomerases (1)

Symmetry Type

	Asymmetric (70)
	Cyclic (1)
	Dihedral (1)

SCOP Classification

	Low resolution protein structures (14)
	Alpha and beta proteins (a+b) (7)
	All alpha proteins (6)
	All beta proteins (9)
	Alpha and beta proteins (a/b) (5)
	Small proteins (5)
	Peptides (5)

AllSelected

1 to 25 of 81 Structures

Page 1 of 4

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1CN1 \| pdb_00001cn1	Download File View File

CRYSTAL STRUCTURE OF DEMETALLIZED CONCANAVALIN A. THE METAL-BINDING REGION

Shoham, M., Yonath, A., Sussman, J.L., Moult, J., Traub, W., Gilboa(Kalb), A.J.

(1979) J Mol Biology 131: 137-155

Released	1982-03-04
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Canavalia ensiformis
Macromolecule	CONCANAVALIN A (protein)

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1DV4 \| pdb_00001dv4	Download File View File

PARTIAL STRUCTURE OF 16S RNA OF THE SMALL RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS

Tocilj, A., Schlunzen, F., Janell, D., Gluhmann, M., Hansen, H., Harms, J., Bashan, A., Bartels, H., Agmon, I., Franceschi, F., Yonath, A.

(1999) Proc Natl Acad Sci U S A 96: 14252-14257

Released	2000-02-02
Method	X-RAY DIFFRACTION 4.5 Å
Organisms	Geobacillus stearothermophilus Thermus thermophilus
Macromolecule	RIBOSOMAL PROTEIN S5 (protein) RIBOSOMAL PROTEIN S7 (protein) 16S RIBOSOMAL RNA (nucleic acid)
Unique Ligands	WO2

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1FKA \| pdb_00001fka	Download File View File

STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION

Schluenzen, F., Tocilj, A., Zarivach, R., Harms, J., Gluehmann, M., Janell, D., Bashan, A., Bartels, H., Agmon, I., Franceschi, F., Yonath, A.

(2000) Cell 102: 615-623

Released	2000-09-04
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Thermus thermophilus
Macromolecule	Unique protein chains: 19 Unique nucleic acid chains: 1
Unique Ligands	WO2

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1I94 \| pdb_00001i94	Download File View File

CRYSTAL STRUCTURES OF THE SMALL RIBOSOMAL SUBUNIT WITH TETRACYCLINE, EDEINE AND IF3

Pioletti, M., Schluenzen, F., Harms, J., Zarivach, R., Gluehmann, M., Avila, H., Bartels, H., Jacobi, C., Hartsch, T., Yonath, A., Franceschi, F.

(2001) EMBO J 20: 1829-1839

Released	2001-04-12
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Thermus thermophilus
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	MG, WO2, ZN

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1I95 \| pdb_00001i95	Download File View File

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH EDEINE

Pioletti, M., Schluenzen, F., Harms, J., Zarivach, R., Gluehmann, M., Avila, H., Bartels, H., Jacobi, C., Hartsch, T., Yonath, A., Franceschi, F.

(2001) EMBO J 20: 1829-1839

Released	2001-04-12
Method	X-RAY DIFFRACTION 4.5 Å
Organisms	Thermus thermophilus
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	EDE, MG, WO2, ZN

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1I96 \| pdb_00001i96	Download File View File

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH THE TRANSLATION INITIATION FACTOR IF3 (C-TERMINAL DOMAIN)

Pioletti, M., Schluenzen, F., Harms, J., Zarivach, R., Gluehmann, M., Avila, H., Bartels, H., Jacobi, C., Hartsch, T., Yonath, A., Franceschi, F.

(2001) EMBO J 20: 1829-1839

Released	2001-04-12
Method	X-RAY DIFFRACTION 4.2 Å
Organisms	Thermus thermophilus
Macromolecule	Unique protein chains: 21 Unique nucleic acid chains: 1
Unique Ligands	MG, WO2, ZN

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1I97 \| pdb_00001i97	Download File View File

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE

Pioletti, M., Schluenzen, F., Harms, J., Zarivach, R., Gluehmann, M., Avila, H., Bartels, H., Jacobi, C., Hartsch, T., Yonath, A., Franceschi, F.

(2001) EMBO J 20: 1829-1839

Released	2001-04-12
Method	X-RAY DIFFRACTION 4.5 Å
Organisms	Thermus thermophilus
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	MG, TAC, WO2, ZN

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1J5A \| pdb_00001j5a	Download File View File

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Schluenzen, F., Zarivach, R., Harms, J., Bashan, A., Tocilj, A., Albrecht, R., Yonath, A., Franceschi, F.

(2001) Nature 413: 814-821

Released	2002-03-08
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Deinococcus radiodurans
Macromolecule	RIBOSOMAL PROTEIN L22 (protein) RIBOSOMAL PROTEIN L32 (protein) RIBOSOMAL PROTEIN L4 (protein) 23S RRNA (nucleic acid)
Unique Ligands	CTY, MG

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1JZX \| pdb_00001jzx	Download File View File

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Schluenzen, F., Zarivach, R., Harms, J., Bashan, A., Tocilj, A., Albrecht, R., Yonath, A., Franceschi, F.

(2001) Nature 413: 814-821

Released	2001-10-26
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Deinococcus radiodurans
Macromolecule	Ribosomal Protein L22 (protein) Ribosomal Protein L32 (protein) Ribosomal Protein L4 (protein) 23S rRNA (nucleic acid)
Unique Ligands	CLY, MG

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1JZY \| pdb_00001jzy	Download File View File

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Schluenzen, F., Zarivach, R., Harms, J., Bashan, A., Tocilj, A., Albrecht, R., Yonath, A., Franceschi, F.

(2001) Nature 413: 814-821

Released	2001-10-26
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Deinococcus radiodurans
Macromolecule	Ribosomal Protein L22 (protein) Ribosomal Protein L32 (protein) Ribosomal Protein L4 (protein) 23S rRNA (nucleic acid)
Unique Ligands	ERY, MG

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1JZZ \| pdb_00001jzz	Download File View File

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Schluenzen, F., Zarivach, R., Harms, J., Bashan, A., Tocilj, A., Albrecht, R., Yonath, A., Franceschi, F.

(2001) Nature 413: 814-821

Released	2001-10-26
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Deinococcus radiodurans
Macromolecule	Ribosomal Protein L22 (protein) Ribosomal Protein L32 (protein) Ribosomal Protein L4 (protein) 23S rRNA (nucleic acid)
Unique Ligands	MG, ROX

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1K01 \| pdb_00001k01	Download File View File

Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria

Schluenzen, F., Zarivach, R., Harms, J., Bashan, A., Tocilj, A., Albrecht, R., Yonath, A., Franceschi, F.

(2001) Nature 413: 814-821

Released	2001-10-26
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Deinococcus radiodurans
Macromolecule	Ribosomal Protein L22 (protein) Ribosomal Protein L32 (protein) Ribosomal Protein L4 (protein) 23S rRNA (nucleic acid)
Unique Ligands	CLM, MG

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1NJM \| pdb_00001njm	Download File View File

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Bashan, A., Agmon, I., Zarivatch, R., Schluenzen, F., Harms, J.M., Berisio, R., Bartels, H., Hansen, H.A., Yonath, A.

(2003) Mol Cell 11: 91-102

Released	2003-02-11
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Deinococcus radiodurans
Macromolecule	50S ribosomal protein L16 (protein) GENERAL STRESS PROTEIN CTC (protein) 23S ribosomal RNA (nucleic acid) tRNA acceptor stem mimic (nucleic acid)
Unique Ligands	SPS

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1NJN \| pdb_00001njn	Download File View File

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin

Bashan, A., Agmon, I., Zarivatch, R., Schluenzen, F., Harms, J.M., Berisio, R., Bartels, H., Hansen, H.A., Yonath, A.

(2003) Mol Cell 11: 91-102

Released	2003-02-11
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Deinococcus radiodurans
Macromolecule	23S ribosomal RNA (nucleic acid)
Unique Ligands	SPS

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1NJO \| pdb_00001njo	Download File View File

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP)

Bashan, A., Agmon, I., Zarivatch, R., Schluenzen, F., Harms, J.M., Berisio, R., Bartels, H., Hansen, H.A., Yonath, A.

(2003) Mol Cell 11: 91-102

Released	2003-02-11
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Deinococcus radiodurans
Macromolecule	23S ribosomal RNA (nucleic acid) RNA ACC(Puromycin) (nucleic acid)

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1NJP \| pdb_00001njp	Download File View File

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Bashan, A., Agmon, I., Zarivatch, R., Schluenzen, F., Harms, J.M., Berisio, R., Bartels, H., Hansen, H.A., Yonath, A.

(2003) Mol Cell 11: 91-102

Released	2003-02-11
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Deinococcus radiodurans
Macromolecule	50S ribosomal protein L16 (protein) GENERAL STRESS PROTEIN CTC (protein) 23S ribosomal RNA (nucleic acid) tRNA acceptor stem mimic (nucleic acid)

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1NKW \| pdb_00001nkw	Download File View File

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Harms, J.M., Schluenzen, F., Zarivach, R., Bashan, A., Gat, S., Agmon, I., Bartels, H., Franceschi, F., Yonath, A.

(2001) Cell 107: 679-688

Released	2003-02-11
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Deinococcus radiodurans
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 2

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1NWX \| pdb_00001nwx	Download File View File

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773

Schluenzen, F., Harms, J., Franceschi, F., Hansen, H.A.S., Bartels, H., Zarivach, R., Yonath, A.

(2003) Structure 11: 329-338

Released	2003-03-18
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Deinococcus radiodurans
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 2
Unique Ligands	773

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1NWY \| pdb_00001nwy	Download File View File

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Schluenzen, F., Harms, J., Franceschi, F., Hansen, H.A.S., Bartels, H., Zarivach, R., Yonath, A.

(2003) Structure 11: 329-338

Released	2003-03-18
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Deinococcus radiodurans
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 2
Unique Ligands	ZIT

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1OND \| pdb_00001ond	Download File View File

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Berisio, R., Schluenzen, F., Harms, J., Bashan, A., Auerbach, T., Baram, D., Yonath, A.

(2003) Nat Struct Biol 10: 366-370

Released	2003-04-15
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Deinococcus radiodurans
Macromolecule	50S ribosomal protein L22 (protein) 50S ribosomal protein L32 (protein) 23S RIBOSOMAL RNA (nucleic acid)
Unique Ligands	TAO

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1P9X \| pdb_00001p9x	Download File View File

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TELITHROMYCIN KETOLIDE ANTIBIOTIC

Berisio, R., Harms, J., Schluenzen, F., Zarivach, R., Hansen, H.A., Fucini, P., Yonath, A.

(2003) J Bacteriol 185: 4276-4279

Released	2003-08-05
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Deinococcus radiodurans
Macromolecule	23S RIBOSOMAL RNA (nucleic acid)
Unique Ligands	TEL

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1SM1 \| pdb_00001sm1	Download File View File

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Harms, J.M., Schluenzen, F., Fucini, P., Bartels, H., Yonath, A.

(2004) BMC Biol 2: 4

Released	2004-08-03
Method	X-RAY DIFFRACTION 3.42 Å
Organisms	Deinococcus radiodurans Streptomyces graminofaciens
Macromolecule	Unique protein chains: 30 Unique nucleic acid chains: 2
Unique Ligands	DOL

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1XBP \| pdb_00001xbp	Download File View File

Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with Tiamulin

Schluenzen, F., Pyetan, E., Fucini, P., Yonath, A., Harms, J.M.

(2004) Mol Microbiol 54: 1287-1294

Released	2005-03-01
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Deinococcus radiodurans
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 2
Unique Ligands	MUL

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1Z58 \| pdb_00001z58	Download File View File

Crystal structure of a complex of the ribosome large subunit with rapamycin

Amit, M., Berisio, R., Baram, D., Harms, J., Bashan, A., Yonath, A.

(2005) FEBS Lett 579: 3207-3213

Released	2005-06-28
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Deinococcus radiodurans
Macromolecule	23S RIBOSOMAL RNA (nucleic acid)
Unique Ligands	RAP

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2AAR \| pdb_00002aar	Download File View File

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Baram, D., Pyetan, E., Sittner, A., Auerbach-Nevo, T., Bashan, A., Yonath, A.

(2005) Proc Natl Acad Sci U S A 102: 12017-12022

Released	2005-08-23
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Deinococcus radiodurans
Macromolecule	50S ribosomal protein L23 (protein) 50S ribosomal protein L29 (protein) Trigger Factor (protein) 23S ribosomal RNA (nucleic acid)

1 to 25 of 81 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1CN1 | pdb_00001cn1

1DV4 | pdb_00001dv4

1FKA | pdb_00001fka

1I94 | pdb_00001i94

1I95 | pdb_00001i95

1I96 | pdb_00001i96

1I97 | pdb_00001i97

1J5A | pdb_00001j5a

1JZX | pdb_00001jzx

1JZY | pdb_00001jzy

1JZZ | pdb_00001jzz

1K01 | pdb_00001k01

1NJM | pdb_00001njm

1NJN | pdb_00001njn

1NJO | pdb_00001njo

1NJP | pdb_00001njp

1NKW | pdb_00001nkw

1NWX | pdb_00001nwx

1NWY | pdb_00001nwy

1OND | pdb_00001ond

1P9X | pdb_00001p9x

1SM1 | pdb_00001sm1

1XBP | pdb_00001xbp

1Z58 | pdb_00001z58

2AAR | pdb_00002aar