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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Zhao, D."

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Search Summary

This query matches 31 Structures.

Refinements

Structure Determination Methodology

experimental (31)

Scientific Name of Source Organism

	Human immunodeficiency virus 1 (12)
	Homo sapiens (9)
	Human spumaretrovirus (6)
	Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE) (5)
	Visna/maedi virus EV1 KV1772 (2)
	Human immunodeficiency virus type 2 (ISOLATE ROD) (1)

Taxonomy

	Riboviria (26)
	Eukaryota (9)

Experimental Method

	X-RAY DIFFRACTION (28)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (31)
	DNA (6)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (7)
	2.5 - 3.0 (9)
	3.0 - 3.5 (8)

Release Date

	1995 - 1999 (10)
	2005 - 2009 (5)
	2010 - 2014 (16)

Enzyme Classification Name

	Hydrolases (4)
	Transferases (4)

Symmetry Type

	Cyclic (25)
	Asymmetric (9)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (17)
	All alpha proteins (5)
	All beta proteins (4)
	Artifacts (2)

AllSelected

1 to 25 of 31 Structures

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1BHL	Download File View File

CACODYLATED CATALYTIC DOMAIN OF HIV-1 INTEGRASE

Maignan, S., Guilloteau, J.P., Zhou-Liu, Q., Clement-Mella, C., Mikol, V.

(1998) J Mol Biol 282: 359-368

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 INTEGRASE (protein)

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1BI4	Download File View File

CATALYTIC DOMAIN OF HIV-1 INTEGRASE

Maignan, S., Guilloteau, J.P., Zhou-Liu, Q., Clement-Mella, C., Mikol, V.

(1998) J Mol Biol 282: 359-368

Released	1998-11-04
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	INTEGRASE (protein)

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1BIS	Download File View File

HIV-1 INTEGRASE CORE DOMAIN

Goldgur, Y., Dyda, F., Hickman, A.B., Jenkins, T.M., Craigie, R., Davies, D.R.

(1998) Proc Natl Acad Sci U S A 95: 9150-9154

Released	1998-08-19
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 INTEGRASE (protein)

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1BIU	Download File View File

HIV-1 INTEGRASE CORE DOMAIN COMPLEXED WITH MG++

Goldgur, Y., Dyda, F., Hickman, A.B., Jenkins, T.M., Craigie, R., Davies, D.R.

(1998) Proc Natl Acad Sci U S A 95: 9150-9154

Released	1998-08-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 INTEGRASE (protein)
Unique Ligands	MG

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1BIZ	Download File View File

HIV-1 INTEGRASE CORE DOMAIN

Goldgur, Y., Dyda, F., Hickman, A.B., Jenkins, T.M., Craigie, R., Davies, D.R.

(1998) Proc Natl Acad Sci U S A 95: 9150-9154

Released	1998-08-19
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 INTEGRASE (protein)
Unique Ligands	CAC

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1BL3	Download File View File

CATALYTIC DOMAIN OF HIV-1 INTEGRASE

Maignan, S., Guilloteau, J.P., Zhou-Liu, Q., Clement-Mella, C., Mikol, V.

(1998) J Mol Biol 282: 359-368

Released	1998-09-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	INTEGRASE (protein)
Unique Ligands	MG

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1IHV	Download File View File

SOLUTION STRUCTURE OF THE DNA BINDING DOMAIN OF HIV-1 INTEGRASE, NMR, MINIMIZED AVERAGE STRUCTURE

Clore, G.M., Lodi, P.J., Ernst, J.A., Gronenborn, A.M.

(1995) Biochemistry 34: 9826-9833

Released	1996-10-14
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 INTEGRASE (protein)

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1IHW	Download File View File

SOLUTION STRUCTURE OF THE DNA BINDING DOMAIN OF HIV-1 INTEGRASE, NMR, 40 STRUCTURES

Clore, G.M., Lodi, P.J., Ernst, J.A., Gronenborn, A.M.

(1995) Biochemistry 34: 9826-9833

Released	1996-07-11
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 INTEGRASE (protein)

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1ITG	Download File View File

CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HIV-1 INTEGRASE: SIMILARITY TO OTHER POLYNUCLEOTIDYL TRANSFERASES

Dyda, F., Hickman, A.B., Jenkins, T.M., Engelman, A., Craigie, R., Davies, D.R.

(1994) Science 266: 1981-1986

Released	1995-05-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 INTEGRASE (protein)
Unique Ligands	CAC

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1Z9E	Download File View File

Solution structure of the HIV-1 integrase-binding domain in LEDGF/p75

Cherepanov, P., Sun, Z.-Y.J., Rahman, S., Maertens, G., Wagner, G., Engelman, A.

(2005) Nat Struct Mol Biol 12: 526-532

Released	2005-05-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PC4 and SFRS1 interacting protein 2 (protein)

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2B4J	Download File View File

Structural basis for the recognition between HIV-1 integrase and LEDGF/p75

Cherepanov, P., Ambrosio, A.L., Rahman, S., Ellenberger, T., Engelman, A.

(2005) Proc Natl Acad Sci U S A 102: 17308-17313

Released	2005-10-25
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Integrase (IN) (protein) PC4 and SFRS1 interacting protein (protein)
Unique Ligands	GOL, PO4

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2ITG	Download File View File

CATALYTIC DOMAIN OF HIV-1 INTEGRASE: ORDERED ACTIVE SITE IN THE F185H CONSTRUCT

Bujacz, G., Alexandratos, J., Wlodawer, A., Zhou-Liu, Q., Clement-Mella, C.

(1996) FEBS Lett 398: 175-178

Released	1997-03-12
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HUMAN IMMUNODEFICIENCY VIRUS-1 INTEGRASE (protein)

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3F9K	Download File View File

Two domain fragment of HIV-2 integrase in complex with LEDGF IBD

Hare, S., Cherepanov, P.

(2009) PLoS Pathog 5: e1000259-e1000259

Released	2009-01-20
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens Human immunodeficiency virus type 2 (ISOLATE ROD)
Macromolecule	Integrase (protein) PC4 and SFRS1-interacting protein (protein)
Unique Ligands	MG, ZN

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3HPG	Download File View File

Visna virus integrase (residues 1-219) in complex with LEDGF IBD: examples of open integrase dimer-dimer interfaces

Hare, S., Labeja, A., Cherepanov, P.

(2009) PLoS Pathog 5: e1000515-e1000515

Released	2009-07-28
Method	X-RAY DIFFRACTION 3.28 Å
Organisms	Homo sapiens Visna/maedi virus EV1 KV1772
Macromolecule	Integrase (protein) PC4 and SFRS1-interacting protein (protein)
Unique Ligands	ZN

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3HPH	Download File View File

Closed tetramer of Visna virus integrase (residues 1-219) in complex with LEDGF IBD

Hare, S., Wang, J., Cherepanov, P.

(2009) PLoS Pathog 5: e1000515-e1000515

Released	2009-07-28
Method	X-RAY DIFFRACTION 2.64 Å
Organisms	Homo sapiens Visna/maedi virus EV1 KV1772
Macromolecule	Integrase (protein) PC4 and SFRS1-interacting protein (protein)
Unique Ligands	GOL, PO4, ZN

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3L2Q	Download File View File

Crystal structure of the Prototype Foamy Virus (PFV) intasome in apo form

Hare, S., Gupta, S.S., Cherepanov, P.

(2010) Nature 464: 232-236

Released	2010-02-09
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Human spumaretrovirus
Macromolecule	Integrase (protein) 5'-D(APTPTPGPTPCPAPTPGPGPAPAPTPTPTPTPGPTPA)-3' (nucleic acid) 5'-D(TPAPCPAPAPAPAPTPTPCPCPAPTPGPAPCPA)-3' (nucleic acid)
Unique Ligands	GOL, ZN

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3L2R	Download File View File

Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium

Hare, S., Gupta, S.S., Cherepanov, P.

(2010) Nature 464: 232-236

Released	2010-02-09
Method	X-RAY DIFFRACTION 2.88 Å
Organisms	Human spumaretrovirus
Macromolecule	Integrase (protein) 5'-D(APTPTPGPTPCPAPTPGPGPAPAPTPTPTPTPGPTPA)-3' (nucleic acid) 5'-D(TPAPCPAPAPAPAPTPTPCPCPAPTPGPAPCPA)-3' (nucleic acid)
Unique Ligands	GOL, MG, NH4, ZN

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3L2U	Download File View File

Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and GS9137 (Elvitegravir)

Hare, S., Gupta, S.S., Cherepanov, P.

(2010) Nature 464: 232-236

Released	2010-02-09
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Human spumaretrovirus
Macromolecule	Integrase (protein) 5'-D(APTPTPGPTPCPAPTPGPGPAPAPTPTPTPTPGPTPA)-3' (nucleic acid) 5'-D(TPAPCPAPAPAPAPTPTPCPCPAPTPGPAPCPA)-3' (nucleic acid)
Unique Ligands	ELV, GOL, MG, NH4, ZN

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3L2V	Download File View File

Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese and MK0518 (Raltegravir)

Hare, S., Gupta, S.S., Cherepanov, P.

(2010) Nature 464: 232-236

Released	2010-02-09
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Human spumaretrovirus
Macromolecule	Integrase (protein) 5'-D(APTPTPGPTPCPAPTPGPGPAPAPTPTPTPTPGPTPA)-3' (nucleic acid) 5'-D(TPAPCPAPAPAPAPTPTPCPCPAPTPGPAPCPA)-3' (nucleic acid)
Unique Ligands	GOL, MN, NH4, RLT, ZN

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3L2W	Download File View File

Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese and GS9137 (Elvitegravir)

Hare, S., Gupta, S.S., Cherepanov, P.

(2010) Nature 464: 232-236

Released	2010-02-09
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Human spumaretrovirus
Macromolecule	Integrase (protein) 5'-D(APTPTPGPTPCPAPTPGPGPAPAPTPTPTPTPGPTPA)-3' (nucleic acid) 5'-D(TPAPCPAPAPAPAPTPTPCPCPAPTPGPAPCPA)-3' (nucleic acid)
Unique Ligands	ELV, GOL, MN, NH4, ZN

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3OY9	Download File View File

Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese at 2.55 resolution

Hare, S., Cherepanov, P.

(2010) Nature 464: 232-236

Released	2010-10-20
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Human spumaretrovirus
Macromolecule	PFV integrase (protein) DNA (5'-D(APTPTPGPTPCPAPTPGPGPAPAPTPTPTPCPGPCPA)-3') (nucleic acid) DNA (5'-D(TPGPCPGPAPAPAPTPTPCPCPAPTPGPAPCPA)-3') (nucleic acid)
Unique Ligands	GOL, MN, NH4, SO4, ZN

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4C0O	Download File View File

Transportin 3 in complex with phosphorylated ASF/SF2

Maertens, G.N., Cook, N.J., Cherepanov, P.

(2014) Proc Natl Acad Sci U S A 111: 2728

Released	2014-01-22
Method	X-RAY DIFFRACTION 2.557 Å
Organisms	Homo sapiens
Macromolecule	SERINE/ARGININE-RICH SPLICING FACTOR 1 (protein) TRANSPORTIN-3 (protein)
Unique Ligands	K

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4C0P	Download File View File

Unliganded Transportin 3

Maertens, G.N., Cook, N.J., Hare, S., Cherepanov, P.

(2014) Proc Natl Acad Sci U S A 111: 2728

Released	2014-01-22
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens
Macromolecule	TRANSPORTIN-3 (protein)
Unique Ligands	DTT

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4C0Q	Download File View File

Transportin 3 in complex with Ran(Q69L)GTP

Maertens, G., Hare, S., Cherepanov, P.

(2014) Proc Natl Acad Sci U S A 111: 2728

Released	2014-01-22
Method	X-RAY DIFFRACTION 3.42 Å
Organisms	Homo sapiens
Macromolecule	GTP-BINDING NUCLEAR PROTEIN RAN (protein) TRANSPORTIN-3 (protein)
Unique Ligands	GTP, MG

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4DMN	Download File View File

HIV-1 Integrase Catalytical Core Domain

Feng, L., Kvaratskhelia, M.

(2012) J Biol Chem 287: 16801-16811

Released	2012-03-21
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	HIV-1 Integrase (protein)
Unique Ligands	0L9, ARS, SO4

1 to 25 of 31 Structures

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