RCSB PDB: Search

1VSO \| pdb_00001vso	Download File View File

Crystal Structure of the Ligand-Binding Core of iGluR5 in Complex With the Antagonist (S)-ATPO at 1.85 A resolution

Hald, H., Naur, P., Gajhede, M., Kastrup, J.S.

(2007) J Biological Chem 282: 25726-25736

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor, ionotropic kainate 1 (protein)
Unique Ligands	AT1, GOL

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2PBW \| pdb_00002pbw	Download File View File

Crystal Structure of the Ligand-Binding Core of iGluR5 in Complex with the Partial agonist Domoic Acid at 2.5 A Resolution

Hald, H., Naur, P., Gajhede, M., Kastrup, J.S.

(2007) J Biological Chem 282: 25726-25736

Released	2007-07-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor, ionotropic kainate 1 (protein)
Unique Ligands	DOQ

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3H6T \| pdb_00003h6t	Download File View File

Crystal structure of the iGluR2 ligand-binding core (S1S2J-N754S) in complex with glutamate and cyclothiazide at 2.25 A resolution

Hald, H., Gajhede, M., Kastrup, J.S.

(2009) J Mol Biology 391: 906-917

Released	2009-07-28
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor 2 (protein)
Unique Ligands	ACT, CAC, CYZ, DMS, GLU, GOL, ZN

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3H6U \| pdb_00003h6u	Download File View File

Crystal structure of the iGluR2 ligand-binding core (S1S2J-N754S) in complex with glutamate and NS1493 at 1.85 A resolution

Hald, H., Gajhede, M., Kastrup, J.S.

(2009) J Mol Biology 391: 906-917

Released	2009-07-28
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor 2 (protein)
Unique Ligands	FLC, GLU, GOL, NS3, SO4

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3H6V \| pdb_00003h6v	Download File View File

Crystal structure of the iGluR2 ligand-binding core (S1S2J-N754S) in complex with glutamate and NS5206 at 2.10 A resolution

Hald, H., Gajhede, M., Kastrup, J.S.

(2009) J Mol Biology 391: 906-917

Released	2009-07-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor 2 (protein)
Unique Ligands	DMS, GLU, GOL, NS6, SO4

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3H6W \| pdb_00003h6w	Download File View File

Crystal structure of the iGluR2 ligand-binding core (S1S2J-N754S) in complex with glutamate and NS5217 at 1.50 A resolution

Hald, H., Gajhede, M., Kastrup, J.S.

(2009) J Mol Biology 391: 906-917

Released	2009-07-28
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor 2 (protein)
Unique Ligands	DMS, GLU, GOL, NS7, SO4

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3U8J \| pdb_00003u8j	Download File View File

Crystal structure of the acetylcholine binding protein (AChBP) from Lymnaea stagnalis in complex with NS3531 (1-(pyridin-3-yl)-1,4-diazepane)

Rohde, L.A.H., Ahring, P.K., Jensen, M.L., Nielsen, E.O., Peters, D., Helgstrand, C., Krintel, C., Harpsoe, K., Gajhede, M., Kastrup, J.S., Balle, T.

(2012) J Biological Chem 287: 4248-4259

Released	2011-12-14
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Lymnaea stagnalis
Macromolecule	Acetylcholine-binding protein (protein)
Unique Ligands	09O, NAG, SO4

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3U8K \| pdb_00003u8k	Download File View File

Crystal structure of the acetylcholine binding protein (AChBP) from Lymnaea stagnalis in complex with NS3573 (1-(5-ethoxypyridin-3-yl)-1,4-diazepane)

Rohde, L.A.H., Ahring, P.K., Jensen, M.L., Nielsen, E.O., Peters, D., Helgstrand, C., Krintel, C., Harpsoe, K., Gajhede, M., Kastrup, J.S., Balle, T.

(2012) J Biological Chem 287: 4248-4259

Released	2011-12-14
Method	X-RAY DIFFRACTION 2.47 Å
Organisms	Lymnaea stagnalis
Macromolecule	Acetylcholine-binding protein (protein)
Unique Ligands	09P, NAG, SO4

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3U8L \| pdb_00003u8l	Download File View File

Crystal structure of the acetylcholine binding protein (AChBP) from Lymnaea stagnalis in complex with NS3570 (1-(5-phenylpyridin-3-yl)-1,4-diazepane)

Rohde, L.A.H., Ahring, P.K., Jensen, M.L., Nielsen, E.O., Peters, D., Helgstrand, C., Krintel, C., Harpsoe, K., Gajhede, M., Kastrup, J.S., Balle, T.

(2012) J Biological Chem 287: 4248-4259

Released	2011-12-14
Method	X-RAY DIFFRACTION 2.32 Å
Organisms	Lymnaea stagnalis
Macromolecule	Acetylcholine-binding protein (protein)
Unique Ligands	09Q, SO4

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3U8M \| pdb_00003u8m	Download File View File

Crystal structure of the acetylcholine binding protein (AChBP) from Lymnaea stagnalis in complex with NS3920 (1-(6-bromopyridin-3-yl)-1,4-diazepane)

Rohde, L.A.H., Ahring, P.K., Jensen, M.L., Nielsen, E.O., Peters, D., Helgstrand, C., Krintel, C., Harpsoe, K., Gajhede, M., Kastrup, J.S., Balle, T.

(2012) J Biological Chem 287: 4248-4259

Released	2011-12-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Lymnaea stagnalis
Macromolecule	Acetylcholine-binding protein (protein)
Unique Ligands	09R, SO4

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3U8N \| pdb_00003u8n	Download File View File

Crystal structure of the acetylcholine binding protein (AChBP) from Lymnaea stagnalis in complex with NS3950 (1-(6-bromo-5-ethoxypyridin-3-yl)-1,4-diazepane)

Rohde, L.A.H., Ahring, P.K., Jensen, M.L., Nielsen, E.O., Peters, D., Helgstrand, C., Krintel, C., Harpsoe, K., Gajhede, M., Kastrup, J.S., Balle, T.

(2012) J Biological Chem 287: 4248-4259

Released	2011-12-14
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Lymnaea stagnalis
Macromolecule	Acetylcholine-binding protein (protein)
Unique Ligands	09S, NAG, SO4

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3WIP \| pdb_00003wip	Download File View File

Crystal structure of acetylcholine bound to Ls-AChBP

Olsen, J.A., Balle, T., Gajhede, M., Ahring, P.K., Kastrup, J.S.

(2014) PLoS One 9: e91232-e91232

Released	2014-04-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Lymnaea stagnalis
Macromolecule	Acetylcholine-binding protein (protein)
Unique Ligands	1PE, ACH, ACT, GOL, SO4

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3ZDG \| pdb_00003zdg	Download File View File

Crystal Structure of Ls-AChBP complexed with carbamoylcholine analogue 3-(dimethylamino)butyl dimethylcarbamate (DMABC)

Ussing, C.A., Hansen, C.P., Petersen, J.G., Jensen, A.A., Rohde, L.A.H., Ahring, P.K., Nielsen, E.O., Kastrup, J.S., Gajhede, M., Frolund, B., Balle, T.

(2013) J Med Chem 56: 940

Released	2013-02-20
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Lymnaea stagnalis
Macromolecule	ACETYLCHOLINE BINDING PROTEIN (protein)
Unique Ligands	1PE, NAG, PEG, SO4, XRX

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3ZDH \| pdb_00003zdh	Download File View File

Crystal structure of Ls-AChBP complexed with carbamoylcholine analogue N,N-dimethyl-4-(1-methyl-1H-imidazol-2-yloxy)butan-2-amine

Ussing, C.A., Hansen, C.P., Petersen, J.G., Jensen, A.A., Rohde, L.A.H., Ahring, P.K., Nielsen, E.O., Kastrup, J.S., Gajhede, M., Frolund, B., Balle, T.

(2013) J Med Chem 56: 940

Released	2013-02-20
Method	X-RAY DIFFRACTION 2.195 Å
Organisms	Lymnaea stagnalis
Macromolecule	ACETYLCHOLINE BINDING PROTEIN (protein)
Unique Ligands	NAG, SO4, XRS

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4E0W \| pdb_00004e0w	Download File View File

Crystal structure of the kainate receptor GluK3 ligand binding domain in complex with kainate

Venskutonyte, R., Frydenvang, K., Kastrup, J.S.

(2012) Neurochem Int 61: 536-545

Released	2012-05-02
Method	X-RAY DIFFRACTION 2.3501 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor, ionotropic kainate 3 (protein)
Unique Ligands	CL, K, KAI

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4E0X \| pdb_00004e0x	Download File View File

Crystal structure of the kainate receptor GluK1 ligand-binding domain in complex with kainate in the absence of glycerol

Frydenvang, K., Kastrup, J.S.

(2012) Neurochem Int 61: 536-545

Released	2012-04-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rattus norvegicus
Macromolecule	Glutamate receptor, ionotropic kainate 1 (protein)
Unique Ligands	CL, KAI, SO4

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4NZB \| pdb_00004nzb	Download File View File

NS9283 bound to Ls-AChBP

Olsen, J.A., Kastrup, J.S., Gajhede, M.

(2014) J Biological Chem 289: 24911-24921

Released	2014-07-09
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Lymnaea stagnalis
Macromolecule	Acetylcholine-binding protein (protein)
Unique Ligands	1PE, ACT, CL, GOL, NAG, NSE, SO4

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4UM1 \| pdb_00004um1	Download File View File

Engineered Ls-AChBP with alpha4-alpha4 binding pocket in complex with NS3573

Shahsavar, A., Kastrup, J.S., Balle, T., Gajhede, M.

(2015) Mol Pharmacol 88: 697

Released	2015-07-22
Method	X-RAY DIFFRACTION 2.83 Å
Organisms	Lymnaea stagnalis
Macromolecule	ACETYLCHOLINE-BINDING PROTEIN (protein)
Unique Ligands	09P, NAG

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4UM3 \| pdb_00004um3	Download File View File

Engineered Ls-AChBP with alpha4-alpha4 binding pocket in complex with NS3920

Shahsavar, A., Kastrup, J.S., Balle, T., Gajhede, M.

(2015) Mol Pharmacol 88: 697

Released	2015-07-22
Method	X-RAY DIFFRACTION 2.703 Å
Organisms	Lymnaea stagnalis
Macromolecule	ACETYLCHOLINE BINDING PROTEIN (protein)
Unique Ligands	09R, NAG, SO4

1VSO | pdb_00001vso

Crystal Structure of the Ligand-Binding Core of iGluR5 in Complex With the Antagonist (S)-ATPO at 1.85 A resolution

2PBW | pdb_00002pbw

Crystal Structure of the Ligand-Binding Core of iGluR5 in Complex with the Partial agonist Domoic Acid at 2.5 A Resolution

3H6T | pdb_00003h6t

Crystal structure of the iGluR2 ligand-binding core (S1S2J-N754S) in complex with glutamate and cyclothiazide at 2.25 A resolution

3H6U | pdb_00003h6u

Crystal structure of the iGluR2 ligand-binding core (S1S2J-N754S) in complex with glutamate and NS1493 at 1.85 A resolution

3H6V | pdb_00003h6v

Crystal structure of the iGluR2 ligand-binding core (S1S2J-N754S) in complex with glutamate and NS5206 at 2.10 A resolution

3H6W | pdb_00003h6w

Crystal structure of the iGluR2 ligand-binding core (S1S2J-N754S) in complex with glutamate and NS5217 at 1.50 A resolution

3U8J | pdb_00003u8j

Crystal structure of the acetylcholine binding protein (AChBP) from Lymnaea stagnalis in complex with NS3531 (1-(pyridin-3-yl)-1,4-diazepane)

3U8K | pdb_00003u8k

Crystal structure of the acetylcholine binding protein (AChBP) from Lymnaea stagnalis in complex with NS3573 (1-(5-ethoxypyridin-3-yl)-1,4-diazepane)

3U8L | pdb_00003u8l

Crystal structure of the acetylcholine binding protein (AChBP) from Lymnaea stagnalis in complex with NS3570 (1-(5-phenylpyridin-3-yl)-1,4-diazepane)

3U8M | pdb_00003u8m

Crystal structure of the acetylcholine binding protein (AChBP) from Lymnaea stagnalis in complex with NS3920 (1-(6-bromopyridin-3-yl)-1,4-diazepane)

3U8N | pdb_00003u8n

Crystal structure of the acetylcholine binding protein (AChBP) from Lymnaea stagnalis in complex with NS3950 (1-(6-bromo-5-ethoxypyridin-3-yl)-1,4-diazepane)

3WIP | pdb_00003wip

Crystal structure of acetylcholine bound to Ls-AChBP

3ZDG | pdb_00003zdg

Crystal Structure of Ls-AChBP complexed with carbamoylcholine analogue 3-(dimethylamino)butyl dimethylcarbamate (DMABC)

3ZDH | pdb_00003zdh

Crystal structure of Ls-AChBP complexed with carbamoylcholine analogue N,N-dimethyl-4-(1-methyl-1H-imidazol-2-yloxy)butan-2-amine

4E0W | pdb_00004e0w

Crystal structure of the kainate receptor GluK3 ligand binding domain in complex with kainate

4E0X | pdb_00004e0x

Crystal structure of the kainate receptor GluK1 ligand-binding domain in complex with kainate in the absence of glycerol

4NZB | pdb_00004nzb

NS9283 bound to Ls-AChBP

4UM1 | pdb_00004um1

Engineered Ls-AChBP with alpha4-alpha4 binding pocket in complex with NS3573

4UM3 | pdb_00004um3

Engineered Ls-AChBP with alpha4-alpha4 binding pocket in complex with NS3920

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

1VSO | pdb_00001vso

2PBW | pdb_00002pbw

3H6T | pdb_00003h6t

3H6U | pdb_00003h6u

3H6V | pdb_00003h6v

3H6W | pdb_00003h6w

3U8J | pdb_00003u8j

3U8K | pdb_00003u8k

3U8L | pdb_00003u8l

3U8M | pdb_00003u8m

3U8N | pdb_00003u8n

3WIP | pdb_00003wip

3ZDG | pdb_00003zdg

3ZDH | pdb_00003zdh

4E0W | pdb_00004e0w

4E0X | pdb_00004e0x

4NZB | pdb_00004nzb

4UM1 | pdb_00004um1

4UM3 | pdb_00004um3