RCSB PDB: Search

3ZME \| pdb_00003zme	Download File View File

Structure of the p53 core domain mutant Y220C bound to the small molecule PhiKan7242

Joerger, A.C., Wilcken, R.

(2013) Nucleic Acids Res 41: 6034-6044

Released	2013-05-08
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	Cellular tumor antigen p53 (protein)
Unique Ligands	QC5, ZN

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5ENB \| pdb_00005enb	Download File View File

Crystal structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in complex with o-Tolylthiourea (SGC - Diamond I04-1 fragment screening)

Krojer, T., Talon, R., Collins, P., Bradley, A., Cox, O., Szykowska, A., Burgess-Brown, N., Brennan, P., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F., Structural Genomics Consortium (SGC)

(2016) Chem Sci 7: 2322-2330

Released	2016-04-27
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Homo sapiens
Macromolecule	PH-interacting protein (protein)
Unique Ligands	5Q5, EDO

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5ENC \| pdb_00005enc	Download File View File

Crystal structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in complex with N-(2,6-Dichlorobenzyl)acetamide (SGC - Diamond I04-1 fragment screening)

Krojer, T., Talon, R., Collins, P., Bradley, A., Cox, O., Szykowska, A., Burgess-Brown, N., Brennan, P., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F., Structural Genomics Consortium (SGC)

(2016) Chem Sci 7: 2322-2330

Released	2016-04-27
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Homo sapiens
Macromolecule	PH-interacting protein (protein)
Unique Ligands	5QD, EDO

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5ENE \| pdb_00005ene	Download File View File

Crystal structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in complex with 5-Amino-2-benzyl-1,3-oxazole-4-carbonitrile (SGC - Diamond I04-1 fragment screening)

Krojer, T., Talon, R., Collins, P., Bradley, A., Cox, O., Amin, J., Szykowska, A., Burgess-Brown, N., Spencer, J., Brennan, P., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F., Structural Genomics Consortium (SGC)

(2016) Chem Sci 7: 2322-2330

Released	2016-04-27
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Homo sapiens
Macromolecule	PH-interacting protein (protein)
Unique Ligands	5Q8

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5ENF \| pdb_00005enf	Download File View File

Crystal structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in complex with fragment-4 N10142 (SGC - Diamond I04-1 fragment screening)

Krojer, T., Talon, R., Collins, P., Bradley, A., Cox, O., Amin, J., Szykowska, A., Burgess-Brown, N., Spencer, J., Brennan, P., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F., Structural Genomics Consortium (SGC)

(2016) Chem Sci 7: 2322-2330

Released	2016-04-27
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Homo sapiens
Macromolecule	PH-interacting protein (protein)
Unique Ligands	5Q7, EDO

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5ENH \| pdb_00005enh	Download File View File

Crystal structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in complex with compound-12 N11528 (SGC - Diamond I04-1 fragment screening)

Krojer, T., Talon, R., Collins, P., Bradley, A., Cox, O., Szykowska, A., Burgess-Brown, N., Brennan, P., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F., Structural Genomics Consortium (SGC)

(2016) Chem Sci 7: 2322-2330

Released	2016-04-27
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	PH-interacting protein (protein)
Unique Ligands	5QB

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5ENI \| pdb_00005eni	Download File View File

Crystal structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in complex with compound-13 N11537 (SGC - Diamond I04-1 fragment screening)

Krojer, T., Talon, R., Collins, P., Bradley, A., Cox, O., Szykowska, A., Burgess-Brown, N., Brennan, P., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F., Structural Genomics Consortium (SGC)

(2016) Chem Sci 7: 2322-2330

Released	2016-04-27
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Homo sapiens
Macromolecule	PH-interacting protein (protein)
Unique Ligands	5QA

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5ENJ \| pdb_00005enj	Download File View File

Crystal structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in complex with compound-14 N11530 (SGC - Diamond I04-1 fragment screening)

Krojer, T., Talon, R., Collins, P., Bradley, A., Cox, O., Szykowska, A., Burgess-Brown, N., Brennan, P., Bountra, C., Arrowsmith, C.H., Edwards, A., von Delft, F., Structural Genomics Consortium (SGC)

(2016) Chem Sci 7: 2322-2330

Released	2016-04-27
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Homo sapiens
Macromolecule	PH-interacting protein (protein)
Unique Ligands	5Q9, MG

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7KEV \| pdb_00007kev	Download File View File

PCSK9 in complex with a cyclic peptide LDLR disruptor

Spraggon, G., Chopra, R.

(2022) Cell Chem Biol 29: 249

Released	2021-11-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Proprotein convertase subtilisin/kexin type 9 (protein) Proprotein convertase subtilisin/kexin type 9 Propeptide (protein) cyclic peptide LDLR disruptor (protein)
Unique Ligands	CA

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7KFA \| pdb_00007kfa	Download File View File

PCSK9 in complex with PCSK9i a 13mer cyclic peptide LDLR disruptor

Chopra, R., Xu, M., Spraggon, G.

(2022) Cell Chem Biol 29: 249

Released	2021-11-10
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL (protein) Proprotein convertase subtilisin/kexin type 9 (protein) Proprotein convertase subtilisin/kexin type 9 Propeptide (protein)
Unique Ligands	CA

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8CCX \| pdb_00008ccx	Download File View File

Human SOD1 in complex with S-XL6 cross-linker

Antonyuk, S.V., Hossain, A., Agar, J.N., Hasnain, S.S.

(2024) PLoS Biol 22: e3002462-e3002462

Released	2023-12-13
Method	X-RAY DIFFRACTION 1.665 Å
Organisms	Homo sapiens
Macromolecule	Superoxide dismutase [Cu-Zn] (protein)
Unique Ligands	CU, DMS, SO4, UDI, ZN

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8Q6M \| pdb_00008q6m	Download File View File

Human SOD1 low dose data collecton

Antonyuk, S.V., Hossain, A., Agar, J.N., Hasnain, S.S.

(2024) PLoS Biol 22: e3002462-e3002462

Released	2023-12-13
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Homo sapiens
Macromolecule	Superoxide dismutase [Cu-Zn] (protein)
Unique Ligands	ACT, CU, SO4, ZN

3ZME | pdb_00003zme

Structure of the p53 core domain mutant Y220C bound to the small molecule PhiKan7242

5ENB | pdb_00005enb

Crystal structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in complex with o-Tolylthiourea (SGC - Diamond I04-1 fragment screening)

5ENC | pdb_00005enc

Crystal structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in complex with N-(2,6-Dichlorobenzyl)acetamide (SGC - Diamond I04-1 fragment screening)

5ENE | pdb_00005ene

Crystal structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in complex with 5-Amino-2-benzyl-1,3-oxazole-4-carbonitrile (SGC - Diamond I04-1 fragment screening)

5ENF | pdb_00005enf

Crystal structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in complex with fragment-4 N10142 (SGC - Diamond I04-1 fragment screening)

5ENH | pdb_00005enh

Crystal structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in complex with compound-12 N11528 (SGC - Diamond I04-1 fragment screening)

5ENI | pdb_00005eni

Crystal structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in complex with compound-13 N11537 (SGC - Diamond I04-1 fragment screening)

5ENJ | pdb_00005enj

Crystal structure of the second bromodomain of Pleckstrin homology domain interacting protein (PHIP) in complex with compound-14 N11530 (SGC - Diamond I04-1 fragment screening)

7KEV | pdb_00007kev

PCSK9 in complex with a cyclic peptide LDLR disruptor

7KFA | pdb_00007kfa

PCSK9 in complex with PCSK9i a 13mer cyclic peptide LDLR disruptor

8CCX | pdb_00008ccx

Human SOD1 in complex with S-XL6 cross-linker

8Q6M | pdb_00008q6m

Human SOD1 low dose data collecton

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3ZME | pdb_00003zme

5ENB | pdb_00005enb

5ENC | pdb_00005enc

5ENE | pdb_00005ene

5ENF | pdb_00005enf

5ENH | pdb_00005enh

5ENI | pdb_00005eni

5ENJ | pdb_00005enj

7KEV | pdb_00007kev

7KFA | pdb_00007kfa

8CCX | pdb_00008ccx

8Q6M | pdb_00008q6m