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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Fay, J.F."

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Search Summary

This query matches 137 Structures.

Refinements

Structure Determination Methodology

experimental (137)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (31)
	Rhodopseudomonas palustris (23)
	Streptomyces rubiginosus (20)
	Rhodopseudomonas palustris CGA009 (19)
	Gallus gallus (9)
	Homo sapiens (7)
	Klebsiella pneumoniae (7)
	Salmonella enterica subsp. enterica serovar Typhimurium (7)
	Physeter macrocephalus (5)
	Parengyodontium album (4)

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Taxonomy

	Bacteria (76)
	Riboviria (31)
	Eukaryota (30)
	Naldaviricetes (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (135)
	ELECTRON CRYSTALLOGRAPHY (2)

Polymer Entity Type

Protein (137)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (104)
	2.0 - 2.5 (19)
	2.5 - 3.0 (4)
	3.0 - 3.5 (1)

Release Date

	2015 - 2019 (52)
	2020 - 2024 (83)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (92)
	Isomerases (20)
	Lyases (7)
	Oxidoreductases (5)

Symmetry Type

	Cyclic (76)
	Asymmetric (43)
	Dihedral (17)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (50)
	All beta proteins (31)
	Alpha and beta proteins (a+b) (6)
	All alpha proteins (5)
	Artifacts (3)

AllSelected

1 to 25 of 137 Structures

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5K3A	Download File View File

Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - His280Asn/Fluoroacetate - Cocrystallized - Both Protomers Reacted with Ligand

Mehrabi, P., Kim, T.H., Prosser, S.R., Pai, E.F.

(2017) Science 355:

Released	2017-02-01
Method	X-RAY DIFFRACTION 1.511 Å
Organisms	Rhodopseudomonas palustris CGA009
Macromolecule	Fluoroacetate dehalogenase (protein)
Unique Ligands	CL

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5K3B	Download File View File

Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - Asp110Asn/Chloroacetate - Cocrystallized

Mehrabi, P., Kim, T.H., Prosser, S.R., Pai, E.F.

(2017) Science 355:

Released	2017-02-01
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Rhodopseudomonas palustris CGA009
Macromolecule	Fluoroacetate dehalogenase (protein)
Unique Ligands	CL, R3W

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5K3C	Download File View File

Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - WT/5-Fluorotryptophan

Mehrabi, P., Kim, T.H., Prosser, S.R., Pai, E.F.

(2017) Science 355:

Released	2017-02-01
Method	X-RAY DIFFRACTION 1.541 Å
Organisms	Rhodopseudomonas palustris CGA009
Macromolecule	Fluoroacetate dehalogenase (protein)
Unique Ligands	CL

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5K3D	Download File View File

Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - WT/Apo - No Halide

Mehrabi, P., Kim, T.H., Prosser, S.R., Pai, E.F.

(2017) Science 355:

Released	2017-02-01
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Rhodopseudomonas palustris CGA009
Macromolecule	Fluoroacetate dehalogenase (protein)

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5K3E	Download File View File

Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - Asp110Asn/Glycolate - Cocrystallized

Mehrabi, P., Kim, T.H., Prosser, S.R., Pai, E.F.

(2017) Science 355:

Released	2017-02-01
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Rhodopseudomonas palustris CGA009
Macromolecule	Fluoroacetate dehalogenase (protein)
Unique Ligands	CL, GOA

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5K3F	Download File View File

Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - His280Asn/Fluoroacetate - Cocrystallized - Single Protomer Reacted with Ligand

Mehrabi, P., Kim, T.H., Prosser, S.R., Pai, E.F.

(2017) Science 355:

Released	2017-02-01
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Rhodopseudomonas palustris CGA009
Macromolecule	Fluoroacetate dehalogenase (protein)
Unique Ligands	CL

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5NYV	Download File View File

Crystal structure determination from picosecond infrared laser ablated protein crystals by serial synchrotron crystallography

Schulz, E.C., Kaub, J., Busse, F., Mehrabi, P., Mueller-Werkmeiser, H., Pai, E.F., Robertson, W.D., Miller, R.J.D.

(2017) J Appl Crystallogr 50: 1773-1781

Released	2018-03-21
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Rhodopseudomonas palustris ATCC 17001
Macromolecule	Fluoroacetate dehalogenase (protein)

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5O2G	Download File View File

Crystal structure determination from picosecond infrared laser ablated protein crystals by serial synchrotron crystallography

Schulz, E.C., Kaub, J., Busse, F., Mehrabi, P., Mueller-Werkmeiser, H., Pai, E.F., Robertson, W.D., Miller, R.J.D.

To be published

Released	2018-05-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Rhodopseudomonas palustris
Macromolecule	Fluoroacetate dehalogenase (protein)

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5O2I	Download File View File

An efficient setup for fixed-target, time-resolved serial crystallography with optical excitation

Schulz, E.C., Mueller-Werkmeister, H., Mehrabi, P., Pai, E.F., Miller, R.J.D.

To be published

Released	2018-06-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rhodopseudomonas palustris CGA009
Macromolecule	Fluoroacetate dehalogenase (protein)

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5SWN	Download File View File

Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - Asp110Asn/Fluoroacetate - Cocrystallized

Mehrabi, P., Kim, T.H., Prosser, S.R., Pai, E.F.

(2017) Science 355:

Released	2017-02-01
Method	X-RAY DIFFRACTION 1.541 Å
Organisms	Rhodopseudomonas palustris CGA009
Macromolecule	Fluoroacetate dehalogenase (protein)
Unique Ligands	CL, FAH

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5T4T	Download File View File

Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - Asp110Asn - Apo No Halide

Mehrabi, P., Kim, T.H., Prosser, S.R., Pai, E.F.

(2017) Science 355:

Released	2017-02-01
Method	X-RAY DIFFRACTION 1.511 Å
Organisms	Rhodopseudomonas palustris
Macromolecule	Fluoroacetate dehalogenase (protein)
Unique Ligands	ACT

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6FSX	Download File View File

The hit-and-return system enables efficient time-resolved serial synchrotron crystallography

Schulz, E.C., Mehrabi, P., Mueller-werkmeiser, H., Tellkamp, F., Jha, A., Stuart, W., Persch, E., De Gasparo, R., Diederich, F., Pai, E., Miller, D.

(2018) Nat Methods 15: 901-904

Released	2018-10-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rhodopseudomonas palustris CGA009
Macromolecule	Fluoroacetate dehalogenase (protein)

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6GXD	Download File View File

The hit-and-return system enables efficient time-resolved serial synchrotron crystallography: FAcD752MS after reaction initiation

Schulz, E.C., Mehrabi, P., Mueller-Werkmeister, H., Tellkamp, F., Stuart, W., Persch, E., De Gasparo, R., Diederich, F., Pai, E.F., Miller, R.J.D.

(2018) Nat Methods 15: 901-904

Released	2018-10-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rhodopseudomonas palustris
Macromolecule	fluoroacetate dehalogenase (protein)
Unique Ligands	CL, FAH

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6GXF	Download File View File

The hit-and-return system enables efficient time-resolved serial synchrotron crystallography: RADDAM1

Schulz, E.C., Mehrabi, P., Mueller-Werkmeister, H., Tellkamp, F., Stuart, W., Persch, E., De Gasparo, R., Diederich, F., Pai, E.F., Miller, R.J.D.

(2018) Nat Methods 15: 901-904

Released	2018-10-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rhodopseudomonas palustris CGA009
Macromolecule	Fluoroacetate dehalogenase (protein)

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6GXH	Download File View File

The hit-and-return system enables efficient time-resolved serial synchrotron crystallography: FAcD 0MS after reaction initiation

Schulz, E.C., Mehrabi, P., Mueller-Werkmeister, H., Tellkamp, F., Stuart, W., Persch, E., De Gasparo, R., Diederich, F., Pai, E.F., Miller, R.J.D.

(2018) Nat Methods 15: 901-904

Released	2018-10-17
Method	X-RAY DIFFRACTION 1.802 Å
Organisms	Rhodopseudomonas palustris CGA009
Macromolecule	Fluoroacetate dehalogenase (protein)

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6GXL	Download File View File

The hit-and-return system enables efficient time-resolved serial synchrotron crystallography: RADDAM2

Schulz, E.C., Mehrabi, P., Mueller-Werkmeister, H., Tellkamp, F., Stuart, W., Persch, E., De Gasparo, R., Diederich, F., Pai, E.F., Miller, R.J.D.

(2018) Nat Methods 15: 901-904

Released	2018-10-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rhodopseudomonas palustris CGA009
Macromolecule	Fluoroacetate dehalogenase (protein)

Explore in 3D

6GXT	Download File View File

The hit-and-return system enables efficient time-resolved serial synchrotron crystallography: FAcD2052MS after reaction initiation

Schulz, E.C., Mehrabi, P., Mueller-Werkmeister, H., Tellkamp, F., Stuart, W., Persch, E., De Gasparo, R., Diederich, F., Pai, E.F., Miller, R.J.D.

(2018) Nat Methods 15: 901-904

Released	2018-10-17
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Rhodopseudomonas palustris CGA009
Macromolecule	Fluoroacetate dehalogenase (protein)
Unique Ligands	FAH

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6MUH	Download File View File

Fluoroacetate dehalogenase, room temperature structure solved by serial 1 degree oscillation crystallography

Finke, A.D., Wierman, J.L., Pare-Labrosse, O., Sarrachini, A., Besaw, J., Mehrabi, P., Gruner, S.M., Miller, R.J.D.

(2019) IUCrJ 6: 305-316

Released	2019-03-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rhodopseudomonas palustris CGA009
Macromolecule	Fluoroacetate dehalogenase (protein)

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6MUY	Download File View File

Fluoroacetate dehalogenase, room temperature structure solved by serial 3 degree oscillation crystallography

Finke, A.D., Wierman, J.L., Pare-Labrosse, O., Sarrachini, A., Besaw, J., Mehrabi, P., Gruner, S.M., Miller, R.J.D.

(2019) IUCrJ 6: 305-316

Released	2019-03-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rhodopseudomonas palustris CGA009
Macromolecule	Fluoroacetate dehalogenase (protein)
Unique Ligands	CA

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6MV0	Download File View File

CO-bound Sperm Whale Myoglobin, room temperature structure solved by serial 5degree oscillation crystallography

Finke, A.D., Wierman, J.L., Pare-Labrosse, O., Sarrachini, A., Besaw, J., Mehrabi, P., Gruner, S.M., Miller, R.J.D.

(2019) IUCrJ 6: 305-316

Released	2019-03-27
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Physeter macrocephalus
Macromolecule	Myoglobin (protein)
Unique Ligands	CMO, HEM, SO4

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6MZZ	Download File View File

Fluoroacetate dehalogenase, room temperature structure, using first 1 degree of total 3 degree oscillation

Finke, A.D., Wierman, J.L., Pare-Labrosse, O., Sarrachini, A., Besaw, J., Mehrabi, P., Gruner, S.M., Miller, R.J.D.

(2019) IUCrJ 6: 305-316

Released	2019-03-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rhodopseudomonas palustris CGA009
Macromolecule	Fluoroacetate dehalogenase (protein)
Unique Ligands	CA

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6N00	Download File View File

Fluoroacetate dehalogenase, room temperature structure, using last 1 degree of total 3 degree oscillation and 144 kGy dose

Finke, A.D., Wierman, J.L., Pare-Labrosse, O., Sarrachini, A., Besaw, J., Mehrabi, P., Gruner, S.M., Miller, R.J.D.

(2019) IUCrJ 6: 305-316

Released	2019-03-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Rhodopseudomonas palustris CGA009
Macromolecule	Fluoroacetate dehalogenase (protein)
Unique Ligands	CA

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6N02	Download File View File

CO-bound Sperm Whale Myoglobin, room temperature structure, first 2 degrees of 5 degree total oscillation

Finke, A.D., Wierman, J.L., Pare-Labrosse, O., Sarrachini, A., Besaw, J., Mehrabi, P., Gruner, S.M., Miller, R.J.D.

(2019) IUCrJ 6: 305-316

Released	2019-03-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Physeter macrocephalus
Macromolecule	Myoglobin, CO-bound (protein)
Unique Ligands	CMO, HEM, SO4

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6N03	Download File View File

CO-bound Sperm Whale Myoglobin, room temperature structure, last 2 degrees of 5 degree total oscillation and 160 kGy dose

Finke, A.D., Wierman, J.L., Pare-Labrosse, O., Sarrachini, A., Besaw, J., Mehrabi, P., Gruner, S.M., Miller, R.J.D.

(2019) IUCrJ 6: 305-316

Released	2019-03-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Physeter macrocephalus
Macromolecule	Myoglobin, CO-bound (protein)
Unique Ligands	CMO, HEM, SO4

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6QHP	Download File View File

Time resolved structural analysis of the full turnover of an enzyme - 2256 ms covalent intermediate 1

Schulz, E.C., Mehrabi, P., Pai, E.F., Miller, D.

(2019) Science 365: 1167-1170

Released	2019-09-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rhodopseudomonas palustris Rhodopseudomonas palustris CGA009
Macromolecule	Fluoroacetate dehalogenase (protein)
Unique Ligands	FAH

1 to 25 of 137 Structures

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