RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Gupta, S.S."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Human spumaretrovirus (7)
	Homo sapiens (4)
	Helicobacter pylori J99 (1)
	Human immunodeficiency virus type 2 (ISOLATE ROD) (1)

Taxonomy

	Riboviria (8)
	Eukaryota (4)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (11)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (12)
	DNA (6)

Refinement Resolution (Å)

	2.0 - 2.5 (1)
	2.5 - 3.0 (4)
	3.0 - 3.5 (6)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (9)

Enzyme Classification Name

Hydrolases (1)

Symmetry Type

	Asymmetric (5)
	Cyclic (8)

SCOP Classification

	All alpha proteins (3)
	All beta proteins (2)
	Alpha and beta proteins (a/b) (2)
	Artifacts (1)

AllSelected

1 to 12 of 12 Structures

Page 1 of 1

Sort by

Explore in 3D

2K4J	Download File View File

ArsR DNA Binding Domain

Gupta, S.S., Cover, T.L., Krezel, A.M.

To be published

Released	2008-12-30
Method	SOLUTION NMR
Organisms	Helicobacter pylori J99
Macromolecule	Putative TRANSCRIPTIONAL REGULATOR (protein)

Explore in 3D

3DLR	Download File View File

Crystal structure of the catalytic core domain from PFV integrase

Valkov, E., Cherepanov, P.

(2009) Nucleic Acids Res 37: 243-255

Released	2008-12-09
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Human spumaretrovirus
Macromolecule	Integrase (protein)
Unique Ligands	MG

Explore in 3D

3F9K	Download File View File

Two domain fragment of HIV-2 integrase in complex with LEDGF IBD

Hare, S., Cherepanov, P.

(2009) PLoS Pathog 5: e1000259-e1000259

Released	2009-01-20
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens Human immunodeficiency virus type 2 (ISOLATE ROD)
Macromolecule	Integrase (protein) PC4 and SFRS1-interacting protein (protein)
Unique Ligands	MG, ZN

Explore in 3D

3L2Q	Download File View File

Crystal structure of the Prototype Foamy Virus (PFV) intasome in apo form

Hare, S., Gupta, S.S., Cherepanov, P.

(2010) Nature 464: 232-236

Released	2010-02-09
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Human spumaretrovirus
Macromolecule	Integrase (protein) 5'-D(APTPTPGPTPCPAPTPGPGPAPAPTPTPTPTPGPTPA)-3' (nucleic acid) 5'-D(TPAPCPAPAPAPAPTPTPCPCPAPTPGPAPCPA)-3' (nucleic acid)
Unique Ligands	GOL, ZN

Explore in 3D

3L2R	Download File View File

Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium

Hare, S., Gupta, S.S., Cherepanov, P.

(2010) Nature 464: 232-236

Released	2010-02-09
Method	X-RAY DIFFRACTION 2.88 Å
Organisms	Human spumaretrovirus
Macromolecule	Integrase (protein) 5'-D(APTPTPGPTPCPAPTPGPGPAPAPTPTPTPTPGPTPA)-3' (nucleic acid) 5'-D(TPAPCPAPAPAPAPTPTPCPCPAPTPGPAPCPA)-3' (nucleic acid)
Unique Ligands	GOL, MG, NH4, ZN

Explore in 3D

3L2U	Download File View File

Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and GS9137 (Elvitegravir)

Hare, S., Gupta, S.S., Cherepanov, P.

(2010) Nature 464: 232-236

Released	2010-02-09
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Human spumaretrovirus
Macromolecule	Integrase (protein) 5'-D(APTPTPGPTPCPAPTPGPGPAPAPTPTPTPTPGPTPA)-3' (nucleic acid) 5'-D(TPAPCPAPAPAPAPTPTPCPCPAPTPGPAPCPA)-3' (nucleic acid)
Unique Ligands	ELV, GOL, MG, NH4, ZN

Explore in 3D

3L2V	Download File View File

Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese and MK0518 (Raltegravir)

Hare, S., Gupta, S.S., Cherepanov, P.

(2010) Nature 464: 232-236

Released	2010-02-09
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Human spumaretrovirus
Macromolecule	Integrase (protein) 5'-D(APTPTPGPTPCPAPTPGPGPAPAPTPTPTPTPGPTPA)-3' (nucleic acid) 5'-D(TPAPCPAPAPAPAPTPTPCPCPAPTPGPAPCPA)-3' (nucleic acid)
Unique Ligands	GOL, MN, NH4, RLT, ZN

Explore in 3D

3L2W	Download File View File

Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese and GS9137 (Elvitegravir)

Hare, S., Gupta, S.S., Cherepanov, P.

(2010) Nature 464: 232-236

Released	2010-02-09
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Human spumaretrovirus
Macromolecule	Integrase (protein) 5'-D(APTPTPGPTPCPAPTPGPGPAPAPTPTPTPTPGPTPA)-3' (nucleic acid) 5'-D(TPAPCPAPAPAPAPTPTPCPCPAPTPGPAPCPA)-3' (nucleic acid)
Unique Ligands	ELV, GOL, MN, NH4, ZN

Explore in 3D

3OY9	Download File View File

Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with manganese at 2.55 resolution

Hare, S., Cherepanov, P.

(2010) Nature 464: 232-236

Released	2010-10-20
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Human spumaretrovirus
Macromolecule	PFV integrase (protein) DNA (5'-D(APTPTPGPTPCPAPTPGPGPAPAPTPTPTPCPGPCPA)-3') (nucleic acid) DNA (5'-D(TPGPCPGPAPAPAPTPTPCPCPAPTPGPAPCPA)-3') (nucleic acid)
Unique Ligands	GOL, MN, NH4, SO4, ZN

Explore in 3D

4C0O	Download File View File

Transportin 3 in complex with phosphorylated ASF/SF2

Maertens, G.N., Cook, N.J., Cherepanov, P.

(2014) Proc Natl Acad Sci U S A 111: 2728

Released	2014-01-22
Method	X-RAY DIFFRACTION 2.557 Å
Organisms	Homo sapiens
Macromolecule	SERINE/ARGININE-RICH SPLICING FACTOR 1 (protein) TRANSPORTIN-3 (protein)
Unique Ligands	K

Explore in 3D

4C0P	Download File View File

Unliganded Transportin 3

Maertens, G.N., Cook, N.J., Hare, S., Cherepanov, P.

(2014) Proc Natl Acad Sci U S A 111: 2728

Released	2014-01-22
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens
Macromolecule	TRANSPORTIN-3 (protein)
Unique Ligands	DTT

Explore in 3D

4C0Q	Download File View File

Transportin 3 in complex with Ran(Q69L)GTP

Maertens, G., Hare, S., Cherepanov, P.

(2014) Proc Natl Acad Sci U S A 111: 2728

Released	2014-01-22
Method	X-RAY DIFFRACTION 3.42 Å
Organisms	Homo sapiens
Macromolecule	GTP-BINDING NUCLEAR PROTEIN RAN (protein) TRANSPORTIN-3 (protein)
Unique Ligands	GTP, MG

1 to 12 of 12 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification