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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Hoda, K."

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Search Summary

This query matches 80 Structures.

Refinements

Structure Determination Methodology

experimental (80)

Scientific Name of Source Organism

	Escherichia coli (24)
	Bacillus subtilis (11)
	Haemophilus influenzae (9)
	Thermotoga maritima (8)
	Archaeoglobus fulgidus (5)
	Deinococcus radiodurans (5)
	Campylobacter jejuni (4)
	Salmonella enterica subsp. enterica serovar Typhimurium (3)
	Vibrio cholerae (3)
	Neisseria gonorrhoeae (2)

More...

Taxonomy

	Bacteria (74)
	Archaea (6)

Experimental Method

X-RAY DIFFRACTION (80)

Polymer Entity Type

Protein (80)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (38)
	2.0 - 2.5 (24)
	2.5 - 3.0 (14)
	3.0 - 3.5 (1)

Release Date

2000 - 2004 (80)

Enzyme Classification Name

	Transferases (34)
	Hydrolases (15)
	Lyases (14)
	Isomerases (4)
	Oxidoreductases (4)

Symmetry Type

	Cyclic (58)
	Asymmetric (30)
	Dihedral (8)
	Tetrahedral (3)

SCOP Classification

	Artifacts (44)
	Alpha and beta proteins (a/b) (51)
	Alpha and beta proteins (a+b) (24)
	All beta proteins (8)
	All alpha proteins (2)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 80 Structures

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1INN	Download File View File

CRYSTAL STRUCTURE OF D. RADIODURANS LUXS, P21

Lewis, H.A., Furlong, E.B., Bergseid, M.G., Sanderson, W.E., Buchanan, S.G.

(2001) Structure 9: 527-537

Released	2001-06-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Deinococcus radiodurans
Macromolecule	AUTOINDUCER-2 PRODUCTION PROTEIN LUXS (protein)
Unique Ligands	MET, ZN

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1J6V	Download File View File

CRYSTAL STRUCTURE OF D. RADIODURANS LUXS, C2

Lewis, H.A., Furlong, E.B., Bergseid, M.G., Sanderson, W.E., Buchanan, S.G.

(2001) Structure 9: 527-537

Released	2001-06-08
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Deinococcus radiodurans
Macromolecule	AUTOINDUCER-2 PRODUCTION PROTEIN LUXS (protein)
Unique Ligands	ZN

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1J6W	Download File View File

CRYSTAL STRUCTURE OF HAEMOPHILUS INFLUENZAE LUXS

Lewis, H.A., Furlong, E.B., Bergseid, M.G., Sanderson, W.E., Buchanan, S.G.

(2001) Structure 9: 527-537

Released	2001-06-08
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Haemophilus influenzae
Macromolecule	AUTOINDUCER-2 PRODUCTION PROTEIN LUXS (protein)
Unique Ligands	MET, ZN

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1J6X	Download File View File

CRYSTAL STRUCTURE OF HELICOBACTER PYLORI LUXS

Lewis, H.A., Furlong, E.B., Bergseid, M.G., Sanderson, W.E., Buchanan, S.G.

(2001) Structure 9: 527-537

Released	2001-06-08
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Helicobacter pylori
Macromolecule	AUTOINDUCER-2 PRODUCTION PROTEIN LUXS (protein)
Unique Ligands	MET, ZN

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1MDO	Download File View File

Crystal structure of ArnB aminotransferase with pyridomine 5' phosphate

Noland, B.W., Newman, J.M., Hendle, J., Badger, J., Christopher, J.A., Tresser, J., Buchanan, M.D., Wright, T., Rutter, M.E., Sanderson, W.E., Muller-Dieckmann, H.-J., Gajiwala, K., Sauder, J.M., Buchanan, S.G.

(2002) Structure 10: 1569-1580

Released	2002-12-11
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	ArnB aminotransferase (protein)
Unique Ligands	PMP

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1MDX	Download File View File

Crystal structure of ArnB transferase with pyridoxal 5' phosphate

Noland, B.W., Newman, J.M., Hendle, J., Badger, J., Christopher, J.A., Tresser, J., Buchanan, M.D., Wright, T.A., Rutter, M.E., Sanderson, W.E., Muller-Dieckmann, H.-J., Gajiwala, K.S., Sauder, J.M., Buchanan, S.G.

(2002) Structure 10: 1569-1580

Released	2002-12-11
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (protein)
Unique Ligands	AKG, GOL

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1MDZ	Download File View File

Crystal structure of ArnB aminotransferase with cycloserine and pyridoxal 5' phosphate

(2002) Structure 10: 1569-1580

Released	2002-12-11
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	ArnB aminotransferase (protein)
Unique Ligands	DCS, PLP

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1O60	Download File View File

Crystal structure of KDO-8-phosphate synthase

Structural GenomiX

(2005) Proteins 60: 787-796

Released	2003-11-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Haemophilus influenzae
Macromolecule	2-dehydro-3-deoxyphosphooctonate aldolase (protein)

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1O61	Download File View File

Crystal structure of a PLP-dependent enzyme with PLP

Structural GenomiX

(2005) Proteins 60: 787-796

Released	2003-11-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Campylobacter jejuni
Macromolecule	aminotransferase (protein)
Unique Ligands	ACT, PLP

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1O62	Download File View File

Crystal structure of the apo form of a PLP-dependent enzyme

Structural GenomiX

(2005) Proteins 60: 787-796

Released	2003-11-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Campylobacter jejuni
Macromolecule	aminotransferase (protein)
Unique Ligands	ACT, BME

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1O63	Download File View File

Crystal structure of an ATP phosphoribosyltransferase

Structural GenomiX

(2005) Proteins 60: 787-796

Released	2003-11-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermotoga maritima
Macromolecule	ATP phosphoribosyltransferase (protein)

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1O64	Download File View File

Crystal structure of an ATP phosphoribosyltransferase

Structural GenomiX

(2005) Proteins 60: 787-796

Released	2003-11-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermotoga maritima
Macromolecule	ATP phosphoribosyltransferase (protein)
Unique Ligands	PO4

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1O65	Download File View File

Crystal structure of an hypothetical protein

Structural GenomiX

(2005) Proteins 60: 787-796

Released	2003-11-11
Method	X-RAY DIFFRACTION 2.33 Å
Organisms	Escherichia coli
Macromolecule	Hypothetical protein yiiM (protein)

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1O66	Download File View File

Crystal structure of 3-methyl-2-oxobutanoate hydroxymethyltransferase

Structural GenomiX

(2005) Proteins 60: 787-796

Released	2003-11-11
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Neisseria meningitidis serogroup B
Macromolecule	3-methyl-2-oxobutanoate hydroxymethyltransferase (protein)
Unique Ligands	GOL

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1O67	Download File View File

Crystal structure of an hypothetical protein

Structural GenomiX

(2005) Proteins 60: 787-796

Released	2003-11-11
Method	X-RAY DIFFRACTION 2.54 Å
Organisms	Escherichia coli
Macromolecule	Hypothetical protein yiiM (protein)

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1O68	Download File View File

Crystal structure of 3-methyl-2-oxobutanoate hydroxymethyltransferase

Structural GenomiX

(2005) Proteins 60: 787-796

Released	2003-11-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Neisseria meningitidis serogroup B
Macromolecule	3-methyl-2-oxobutanoate hydroxymethyltransferase (protein)
Unique Ligands	KIV, NA

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1O69	Download File View File

Crystal structure of a PLP-dependent enzyme

Structural GenomiX

(2005) Proteins 60: 787-796

Released	2003-11-11
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Campylobacter jejuni
Macromolecule	aminotransferase (protein)
Unique Ligands	BME, X04

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1O6B	Download File View File

Crystal structure of phosphopantetheine adenylyltransferase with ADP

Structural GenomiX

(2005) Proteins 60: 787-796

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus subtilis
Macromolecule	Phosphopantetheine adenylyltransferase (protein)
Unique Ligands	ADP, CL, MG, PO4

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1O6C	Download File View File

Crystal structure of UDP-N-acetylglucosamine 2-epimerase

Structural GenomiX

(2005) Proteins 60: 787-796

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Bacillus subtilis
Macromolecule	UDP-N-acetylglucosamine 2-epimerase (protein)

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1O6D	Download File View File

Crystal structure of a hypothetical protein

Structural GenomiX

(2005) Proteins 60: 787-796

Released	2003-11-25
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Thermotoga maritima
Macromolecule	Hypothetical UPF0247 protein TM0844 (protein)

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1VGT	Download File View File

Crystal structure of 4-diphosphocytidyl-2C-methyl-D-erythritol synthase

Structural GenomiX

(2005) Proteins 60: 787-796

Released	2003-11-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (protein)

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1VGU	Download File View File

Crystal structure of 4-diphosphocytidyl-2C-methyl-D-erythritol synthase

Structural GenomiX

(2005) Proteins 60: 787-796

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (protein)

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1VGV	Download File View File

Crystal structure of UDP-N-acetylglucosamine_2 epimerase

Structural GenomiX

(2005) Proteins 60: 787-796

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Escherichia coli
Macromolecule	UDP-N-acetylglucosamine 2-epimerase (protein)
Unique Ligands	UD1

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1VGW	Download File View File

Crystal structure of 4-diphosphocytidyl-2C-methyl-D-erythritol synthase

Structural GenomiX

(2005) Proteins 60: 787-796

Released	2003-11-25
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Neisseria gonorrhoeae
Macromolecule	4-diphosphocytidyl-2C-methyl-D-erythritol synthase (protein)