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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Jiang, J.J."

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Search Summary

This query matches 34 Structures.

Refinements

Structure Determination Methodology

experimental (34)

Scientific Name of Source Organism

	Homo sapiens (9)
	Streptomyces kanamyceticus (6)
	Mycobacterium tuberculosis H37Ra (4)
	Vibrio vulnificus CMCP6 (4)
	Datura metel (3)
	Bacillus anthracis str. 'Ames Ancestor (2)
	Papaver somniferum (2)
	Tetranychus urticae (2)
	synthetic construct (2)
	Caenorhabditis elegans (1)

More...

Taxonomy

	Eukaryota (18)
	Bacteria (16)
	Eukaryota (eukaryotes) (3)
	other sequences (2)

Experimental Method

X-RAY DIFFRACTION (34)

Polymer Entity Type

Protein (34)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (7)
	2.0 - 2.5 (16)
	2.5 - 3.0 (6)
	3.0 - 3.5 (2)

Release Date

	2005 - 2009 (5)
	2010 - 2014 (2)
	2015 - 2019 (18)
	2020 - 2024 (9)

Enzyme Classification Name

	Oxidoreductases (28)
	Transferases (2)

Symmetry Type

	Asymmetric (25)
	Dihedral (9)

SCOP Classification

	All alpha proteins (2)
	All beta proteins (2)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 34 Structures

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Explore in 3D

2OQ6 \| pdb_00002oq6	Download File View File

Crystal structure of JMJD2A complexed with histone H3 peptide trimethylated at Lys9

Pilka, E.S., Ng, S.S., Kavanagh, K.L., McDonough, M.A., Savitsky, P., von Delft, F., Arrowsmith, C.H., Weigelt, J., Edwards, A., Sundstrom, M., Schofield, C.J., Oppermann, U., Structural Genomics Consortium (SGC)

(2007) Nature 448: 87-91

Released	2007-03-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	JmjC domain-containing histone demethylation protein 3A (protein) synthetic peptide (protein)
Unique Ligands	NI, OGA, ZN

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2OQ7 \| pdb_00002oq7	Download File View File

The crystal structure of JMJD2A complexed with Ni and N-oxalylglycine

Kavanagh, K.L., Ng, S.S., Pilka, E., McDonough, M.A., Savitsky, P., von Delft, F., Arrowsmith, C.H., Weigelt, J., Edwards, A., Sundstrom, M., Schofield, C.J., Oppermann, U., Structural Genomics Consortium (SGC)

(2007) Nature 448: 87-91

Released	2007-03-13
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	JmjC domain-containing histone demethylation protein 3A (protein)
Unique Ligands	NI, OGA, ZN

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2OS2 \| pdb_00002os2	Download File View File

Crystal structure of JMJD2A complexed with histone H3 peptide trimethylated at Lys36

(2007) Nature 448: 87-91

Released	2007-03-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	JmjC domain-containing histone demethylation protein 3A (protein) histone 3 peptide (protein)
Unique Ligands	NI, OGA, ZN

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2OT7 \| pdb_00002ot7	Download File View File

Crystal structure of JMJD2A complexed with histone H3 peptide monomethylated at Lys9

(2007) Nature 448: 87-91

Released	2007-03-13
Method	X-RAY DIFFRACTION 2.135 Å
Organisms	Homo sapiens
Macromolecule	JmjC domain-containing histone demethylation protein 3A (protein) histone 3 K9 monomethyl (protein)
Unique Ligands	NI, OGA, ZN

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2OX0 \| pdb_00002ox0	Download File View File

Crystal structure of JMJD2A complexed with histone H3 peptide dimethylated at Lys9

(2007) Nature 448: 87-91

Released	2007-03-13
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	JmjC domain-containing histone demethylation protein 3A (protein) synthetic peptide (protein)
Unique Ligands	CL, NI, OGA, ZN

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4QGL \| pdb_00004qgl	Download File View File

Acireductone dioxygenase from Bacillus anthracis with three cadmium ions

Milaczewska, A.M., Chruszcz, M., Majorek, K.A., Porebski, P.J., Borowski, T., Anderson, W.F., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2014-06-18
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Bacillus anthracis str. 'Ames Ancestor
Macromolecule	Acireductone dioxygenase (protein)
Unique Ligands	CD

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4QGM \| pdb_00004qgm	Download File View File

Acireductone dioxygenase from Bacillus anthracis with cadmium ion in active center

Milaczewska, A.M., Chruszcz, M., Shabalin, I.G., Cooper, D.R., Borowski, T., Anderson, W.F., Minor, W., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2014-06-18
Method	X-RAY DIFFRACTION 2.97 Å
Organisms	Bacillus anthracis str. 'Ames Ancestor
Macromolecule	Acireductone dioxygenase (protein)
Unique Ligands	CD

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4QGN \| pdb_00004qgn	Download File View File

Human acireductone dioxygenase with iron ion and L-methionine in active center

Milaczewska, A.M., Chruszcz, M., Petkowski, J.J., Niedzialkowska, E., Minor, W., Borowski, T.

(2018) Chemistry 24: 5225-5237

Released	2015-05-27
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Homo sapiens
Macromolecule	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase (protein)
Unique Ligands	ACT, CL, FE, MSE, SO4

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4XUW \| pdb_00004xuw	Download File View File

Structure of the hazelnut allergen, Cor a 8

Offermann, L.R., Perdue, M.L., Bublin, M., Pfeifer, S., Dubiela, P., Hoffmann-Sommergruber, K., Chruszcz, M.

(2015) J Agric Food Chem 63: 9150-9158

Released	2015-10-14
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Corylus avellana
Macromolecule	Non-specific lipid-transfer protein (protein)
Unique Ligands	PO4

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5LY1 \| pdb_00005ly1	Download File View File

JMJD2A/ KDM4A COMPLEXED WITH NI(II) AND Macrocyclic PEPTIDE Inhibitor CP2 (13-mer)

King, O.N.F., Chowdhury, R., Kawamura, A., Schofield, C.J.

(2017) Nat Commun 8: 14773-14773

Released	2017-04-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	CP2 (protein) Lysine-specific demethylase 4A (protein)
Unique Ligands	CL, GOL, NI, PPI, ZN

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5LY2 \| pdb_00005ly2	Download File View File

JMJD2A/ KDM4A COMPLEXED WITH NI(II), NOG AND Macrocyclic PEPTIDE Inhibitor CP2_R6Kme3 (13-mer)

Chowdhury, R., Madden, S.K., Hopkinson, R., Schofield, C.J.

(2017) Nat Commun 8: 14773-14773

Released	2017-04-12
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	CP2_R6Kme3 (protein) Lysine-specific demethylase 4A (protein)
Unique Ligands	CL, GOL, NI, OGA, ZN

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5O7Y \| pdb_00005o7y	Download File View File

Thebaine 6-O-demethylase (T6ODM) from Papaver somniferum in complex with succinate

Kluza, A., Niedzialkowska, E., Kurpiewska, K., Porebski, P.J., Borowski, T.

(2018) J Struct Biol 202: 229-235

Released	2018-02-14
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Papaver somniferum
Macromolecule	Thebaine 6-O-demethylase (protein)
Unique Ligands	EDO, NI, PEG, SIN

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5O9W \| pdb_00005o9w	Download File View File

Thebaine 6-O-demethylase (T6ODM) from Papaver somniferum in complex with 2-oxoglutarate

Kluza, A., Niedzialkowska, E., Kurpiewska, K., Porebski, P.J., Borowski, T.

(2018) J Struct Biol 202: 229-235

Released	2018-02-14
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Papaver somniferum
Macromolecule	Thebaine 6-O-demethylase (protein)
Unique Ligands	AKG, EDO, NA, NI, PEG, UNX

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5TEJ \| pdb_00005tej	Download File View File

Structure of 4-Hydroxy-tetrahydrodipicolinate Reductase from Vibrio vulnificus with 2,5 Furan Dicarboxylic and NADH

Mank, N., Arnette, K., Klapper, V., Chruszcz, M.

(2021) Biochim Biophys Acta Gen Subj 1865: 129750-129750

Released	2017-10-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	4-hydroxy-tetrahydrodipicolinate reductase (protein)
Unique Ligands	7FN, NA, NAD, PG4, PGE

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5TEK \| pdb_00005tek	Download File View File

Apo Structure of 4-Hydroxy-tetrahydrodipicolinate Reductase from Mycobacterium tuberculosis

Mank, N., Pote, S., Arnette, K., Klapper, V., Chruszcz, M.

(2021) Biochim Biophys Acta Gen Subj 1865: 129750-129750

Released	2017-10-18
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Mycobacterium tuberculosis H37Ra
Macromolecule	4-hydroxy-tetrahydrodipicolinate reductase (protein)
Unique Ligands	CL, NA, PG4

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5TEM \| pdb_00005tem	Download File View File

Structure of 4-Hydroxy-tetrahydrodipicolinate Reductase from Vibrio vulnificus with 2,6 Pyridine Dicarboxylic and NADH

Mank, N., Arnette, K., Klapper, V., Chruszcz, M.

(2021) Biochim Biophys Acta Gen Subj 1865: 129750-129750

Released	2017-10-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	4-hydroxy-tetrahydrodipicolinate reductase (protein)
Unique Ligands	NAD, PDC, SO4

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5TEN \| pdb_00005ten	Download File View File

Structure of 4-Hydroxy-tetrahydrodipicolinate Reductase from Vibrio vulnificus with 2,5 Furan Dicarboxylic and NADH with Intact Polyhistidine Tag

Mank, N., Pote, S., Arnette, K., Klapper, V., Chruszcz, M.

(2021) Biochim Biophys Acta Gen Subj 1865: 129750-129750

Released	2017-10-18
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	4-hydroxy-tetrahydrodipicolinate reductase (protein)
Unique Ligands	7FN, NAD, SO4

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5TJY \| pdb_00005tjy	Download File View File

Structure of 4-Hydroxy-tetrahydrodipicolinate Reductase from Mycobacterium tuberculosis with 2,6 Pyridine Dicarboxylic Acid and NADH

Mank, N., Arnette, K., Klapper, V., Chruszcz, M.

(2021) Biochim Biophys Acta Gen Subj 1865: 129750-129750

Released	2017-10-18
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mycobacterium tuberculosis H37Ra
Macromolecule	4-hydroxy-tetrahydrodipicolinate reductase (protein)
Unique Ligands	BEZ, CL, EDO, IMD, NA, NAI, PDC, PG4, SO4

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5TJZ \| pdb_00005tjz	Download File View File

Structure of 4-Hydroxytetrahydrodipicolinate Reductase from Mycobacterium tuberculosis with NADPH and 2,6 Pyridine Dicarboxylic Acid

Mank, N.J., Arnette, A.K., Klapper, V., Chruszcz, M.

(2021) Biochim Biophys Acta Gen Subj 1865: 129750-129750

Released	2018-01-10
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Mycobacterium tuberculosis H37Ra
Macromolecule	4-hydroxy-tetrahydrodipicolinate reductase (protein)
Unique Ligands	AE3, BEZ, CL, EDO, IMD, NAP, PDC, SO4

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5UGV \| pdb_00005ugv	Download File View File

DapB from Mycobacterium tuberculosis

Pote, S.P., Mank, N., Chruszcz, M.

(2021) Biochim Biophys Acta Gen Subj 1865: 129750-129750

Released	2018-01-17
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Mycobacterium tuberculosis H37Ra
Macromolecule	4-hydroxy-tetrahydrodipicolinate reductase (protein)
Unique Ligands	NAD, PGE, SO4

Explore in 3D

5US6 \| pdb_00005us6	Download File View File

Structure of Dihydrodipicolinate Reductase from Vibrio vulnificus Bound to NADH and 2,6 Pyridine Dicarboxylic Acid with Intact Polyhistidine Tag

Mank, N.M., Arnette, A.K., Chruszcz, M.

(2021) Biochim Biophys Acta Gen Subj 1865: 129750-129750

Released	2018-02-21
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Vibrio vulnificus CMCP6
Macromolecule	4-hydroxy-tetrahydrodipicolinate reductase (protein)
Unique Ligands	NAD, PDC, SO4

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5VG2 \| pdb_00005vg2	Download File View File

Intradiol ring-cleavage Dioxygenase from Tetranychus urticae

Schlachter, C., Klapper, V., Chruszcz, M.

(2019) Insect Biochem Mol Biol 107: 19-30

Released	2018-04-11
Method	X-RAY DIFFRACTION 2.46 Å
Organisms	Tetranychus urticae
Macromolecule	Intradiol ring-cleavage Dioxygenase (protein)
Unique Ligands	CAC, FE

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6BDJ \| pdb_00006bdj	Download File View File

Crystal structure of dioxygenase Tetur07g02040

Daneshian, L., Schlachter, C.R., Chruszcz, M.

(2019) Insect Biochem Mol Biol 107: 19-30

Released	2018-11-14
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Tetranychus urticae
Macromolecule	Tetur07g02040 (protein)
Unique Ligands	FE

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6ELK \| pdb_00006elk	Download File View File

C.elegans MnSOD-3 mutant - Q142H

Hunter, G.J., Trinh, C.H., Hunter, T.

(2018) Chemistry 24: 5303-5308

Released	2017-12-06
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Caenorhabditis elegans
Macromolecule	Superoxide dismutase [Mn] 2, mitochondrial (protein)
Unique Ligands	GOL, MN, SO4

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6H8P \| pdb_00006h8p	Download File View File

JMJD2A/ KDM4A COMPLEXED WITH NI(II), NOG AND Histone H1.4(18-32)K26me3 peptide (15-mer)

Chowdhury, R., Walport, L.J., Schofield, C.J.

(2018) FEBS Lett 592: 3264-3273

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.983 Å
Organisms	Homo sapiens
Macromolecule	Histone H1.4 (protein) Lysine-specific demethylase 4A (protein)
Unique Ligands	CL, GOL, NI, OGA, ZN

1 to 25 of 34 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2OQ6 | pdb_00002oq6

2OQ7 | pdb_00002oq7

2OS2 | pdb_00002os2

2OT7 | pdb_00002ot7

2OX0 | pdb_00002ox0

4QGL | pdb_00004qgl

4QGM | pdb_00004qgm

4QGN | pdb_00004qgn

4XUW | pdb_00004xuw

5LY1 | pdb_00005ly1

5LY2 | pdb_00005ly2

5O7Y | pdb_00005o7y

5O9W | pdb_00005o9w

5TEJ | pdb_00005tej

5TEK | pdb_00005tek

5TEM | pdb_00005tem

5TEN | pdb_00005ten

5TJY | pdb_00005tjy

5TJZ | pdb_00005tjz

5UGV | pdb_00005ugv

5US6 | pdb_00005us6

5VG2 | pdb_00005vg2

6BDJ | pdb_00006bdj

6ELK | pdb_00006elk

6H8P | pdb_00006h8p