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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kilic, T."

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Homo sapiens (15)
	Human immunodeficiency virus 1 (3)
	Spodoptera frugiperda (3)
	DNA-binding vector pODB80 (2)
	synthetic construct (2)
	Schizosaccharomyces pombe 972h- (1)

Taxonomy

	Eukaryota (15)
	other sequences (4)
	Riboviria (3)

Experimental Method

	X-RAY DIFFRACTION (11)
	ELECTRON MICROSCOPY (3)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (15)
	DNA (4)
	RNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (3)
	2.0 - 2.5 (6)
	2.5 - 3.0 (2)
	3.0 - 3.5 (2)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (5)
	2015 - 2019 (3)
	2020 - 2024 (4)

Enzyme Classification Name

Hydrolases (15)

Symmetry Type

	Asymmetric (13)
	Cyclic (4)

SCOP Classification

	Alpha and beta proteins (a/b) (7)
	Artifacts (2)

AllSelected

1 to 15 of 15 Structures

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2KBO	Download File View File

Structure, interaction, and real-time monitoring of the enzymatic reaction of wild type APOBEC3G

Furukawa, A., Nagata, T., Matsugami, A., Habu, Y., Sugiyama, R., Hayashi, F., Kobayashi, N., Yokoyama, S., Takaku, H., Katahira, M.

(2009) EMBO J 28: 440-451

Released	2009-02-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DNA dC->dU-editing enzyme APOBEC-3G (protein)
Unique Ligands	ZN

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3E1U	Download File View File

The Crystal Structure of the Anti-Viral APOBEC3G Catalytic Domain

Holden, L., Prochnow, C., Chang, Y.P., Bransteitter, R., Chelico, L., Sen, U., Stevens, R.C., Goodman, R.F., Chen, X.S.

(2008) Nature 456: 121-124

Released	2008-10-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	DNA dC->dU-editing enzyme APOBEC-3G (protein)
Unique Ligands	ZN

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3IQS	Download File View File

Crystal structure of the anti-viral APOBEC3G catalytic domain

Holden, L.G., Prochnow, C., Chang, Y.P., Bransteitter, R., Chelico, L., Sen, U., Stevens, R.C., Goodman, R.F., Chen, X.S.

(2008) Nature 456: 121-124

Released	2009-11-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	DNA dC->dU-editing enzyme APOBEC-3G (protein)
Unique Ligands	ZN

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3IR2	Download File View File

Crystal structure of the APOBEC3G catalytic domain

Shandilya, S.M.D., Schiffer, C.A.

(2010) Structure 18: 28-38

Released	2010-01-12
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	DNA dC->dU-editing enzyme APOBEC-3G (protein)
Unique Ligands	CL, MG, ZN

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3V4J	Download File View File

First-In-Class Small Molecule Inhibitors of the Single-strand DNA Cytosine Deaminase APOBEC3G

Shandilya, S.M.D., Ali, A., Schiffer, C.A.

(2012) ACS Chem Biol 7: 506-517

Released	2012-02-01
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Homo sapiens
Macromolecule	DNA dC->dU-editing enzyme APOBEC-3G (protein)
Unique Ligands	PQR, ZN

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3V4K	Download File View File

First-In-Class Small Molecule Inhibitors of the Single-strand DNA Cytosine Deaminase APOBEC3G

Shandilya, S.M.D., Ali, A., Schiffer, C.A.

(2012) ACS Chem Biol 7: 506-517

Released	2012-01-25
Method	X-RAY DIFFRACTION 1.38 Å
Organisms	Homo sapiens
Macromolecule	DNA dC->dU-editing enzyme APOBEC-3G (protein)
Unique Ligands	CL, MG, ZN

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4ROV	Download File View File

The crystal structure of novel APOBEC3G CD2 head-to-tail dimer suggests the binding mode of full-length APOBEC3G to HIV-1 ssDNA

Lu, X., Zhang, T., Xu, Z., Liu, S., Zhao, B., Lan, W., Wang, C., Ding, J., Cao, C.

(2015) J Biol Chem 290: 4010-4021

Released	2014-12-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	DNA dC->dU-editing enzyme APOBEC-3G (protein)
Unique Ligands	ZN

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4ROW	Download File View File

The crystal structure of novel APOBEC3G CD2 head-to-tail dimer suggests the binding mode of full-length APOBEC3G to HIV-1 ssDNA

Lu, X., Zhang, T., Xu, Z., Liu, S., Zhao, B., Lan, W., Wang, C., Ding, J., Cao, C.

(2015) J Biol Chem 290: 4010-4021

Released	2014-12-31
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	DNA dC->dU-editing enzyme APOBEC-3G (protein)
Unique Ligands	ZN

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5ZVA	Download File View File

APOBEC3F Chimeric Catalytic Domain in Complex with DNA(dC9)

Cheng, C., Zhang, T.L., Wang, C.X., Lan, W.X., Ding, J.P., Cao, C.Y.

(2018) Chin J Chem 36: 1241-1248

Released	2018-11-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	DNA-binding vector pODB80 Homo sapiens
Macromolecule	APEBEC3F/ssDNA-C9 (protein) DNA (5'-D(APTPTPTPTPCPAPAPCPT)-3') (nucleic acid)
Unique Ligands	CAC, ZN

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5ZVB	Download File View File

APOBEC3F Chimeric Catalytic Domain in Complex with DNA(dT9)

Cheng, C., Zhang, T.L., Wang, C.X., Lan, W.X., Ding, J.P., Cao, C.Y.

(2018) Chin J Chem 36: 1241-1248

Released	2018-11-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	DNA-binding vector pODB80 Homo sapiens
Macromolecule	APEBEC3F/ssDNA-T9 (protein) DNA (5'-D(APTPTPTPTPCPAPAP*T)-3') (nucleic acid)
Unique Ligands	CAC, ZN

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6BWY	Download File View File

DNA substrate selection by APOBEC3G

Ziegler, S.J., Buzovetsky, O.

(2018) PLoS One 13: e0195048-e0195048

Released	2018-04-18
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Schizosaccharomyces pombe 972h- synthetic construct
Macromolecule	Protection of telomeres protein 1, DNA dC->dU-editing enzyme APOBEC-3G fusion (protein) DNA (30-MER) (nucleic acid)
Unique Ligands	PO4, ZN

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7UXD	Download File View File

Crystal structure of APOBEC3G Catalytic domain complex with ssDNA containing 2'-deoxy Zebularine.

Maiti, A., Matsuo, H.

(2022) Nat Commun 13: 7117-7117

Released	2022-12-14
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	DNA dC->dU-editing enzyme APOBEC-3G (protein) DNA (5'-D(APAPTPCPCP(DDN)PAPAP*A)-3') (nucleic acid)
Unique Ligands	ZN

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8CX0	Download File View File

Cryo-EM structure of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC monomeric complex

Li, Y., Langley, C., Azumaya, C.M., Echeverria, I., Chesarino, N.M., Emerman, M., Cheng, Y., Gross, J.D.

(2023) Nature 615: 728-733

Released	2023-02-15
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Spodoptera frugiperda
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 1
Unique Ligands	ZN

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8CX1	Download File View File

Cryo-EM structure of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC dimeric complex in State 1

Li, Y., Langley, C., Azumaya, C.M., Echeverria, I., Chesarino, N.M., Emerman, M., Cheng, Y., Gross, J.D.

(2023) Nature 615: 728-733

Released	2023-02-15
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Spodoptera frugiperda
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2
Unique Ligands	ZN

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8CX2	Download File View File

Cryo-EM structure of human APOBEC3G/HIV-1 Vif/CBFbeta/ELOB/ELOC dimeric complex in State 2

Li, Y., Langley, C., Azumaya, C.M., Echeverria, I., Chesarino, N.M., Emerman, M., Cheng, Y., Gross, J.D.

(2023) Nature 615: 728-733

Released	2023-02-15
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Spodoptera frugiperda
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2
Unique Ligands	ZN

1 to 15 of 15 Structures

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