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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Klingler, F.M."

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Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (4)
	Homo sapiens (3)
	Klebsiella pneumoniae (3)

Taxonomy

	Riboviria (4)
	Bacteria (3)
	Eukaryota (3)

Experimental Method

X-RAY DIFFRACTION (10)

Polymer Entity Type

Protein (10)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (3)
	2.0 - 2.5 (2)
	2.5 - 3.0 (3)

Release Date

	2015 - 2019 (4)
	2020 - 2024 (6)

Enzyme Classification Name

	Hydrolases (7)
	Transferases (2)

Symmetry Type

	Asymmetric (6)
	Cyclic (6)

SCOP Classification

	Alpha and beta proteins (a+b) (3)
	Artifacts (2)

AllSelected

1 to 10 of 10 Structures

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5A5Z \| pdb_00005a5z	Download File View File

Approved Drugs Containing Thiols as Inhibitors of Metallo-beta- lactamases: Strategy To Combat Multidrug-Resistant Bacteria

Klingler, F.M., Wichelhaus, T.A., Frank, D., Cuesta-Bernal, J., El-Delik, J., Mueller, H.F., Sjuts, H., Goettig, S., Koenigs, A., Pogoryelov, D., Proschak, E.

(2015) J Med Chem 58: 3626-3630

Released	2015-07-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Klebsiella pneumoniae
Macromolecule	BETA-LACTAMASE NDM-1 (protein)
Unique Ligands	WJZ, ZN

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5MWA \| pdb_00005mwa	Download File View File

human sEH Phosphatase in complex with 3-4-3,4-dichlorophenyl-5-phenyl-1,3-oxazol-2-yl-benzoic-acid

Kramer, J.S., Pogoryelov, D., Sorrell, F.J., Fox, N., Chaikuad, A., Knapp, S., Proschak, E.

(2019) J Med Chem

Released	2018-02-28
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Bifunctional epoxide hydrolase 2 (protein)
Unique Ligands	8S9, MG

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5NBK \| pdb_00005nbk	Download File View File

NDM-1 metallo-beta-lactamase: a parsimonious interpretation of the diffraction data

Raczynska, J.E., Shabalin, I.G., Jaskolski, M., Minor, W., Wlodawer, A.

(2018) Drug Resist Updat 40: 1-12

Released	2018-10-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Metallo-beta-lactamase type 2 (protein)
Unique Ligands	CL, P6G, PG4, ZN

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5O7N \| pdb_00005o7n	Download File View File

Beta-lactamase VIM-2 in complex with (2R)-1-(2-Benzyl-3-mercaptopropanoyl)piperidine-2-carboxylic acid

Buettner, D., Kramer, J.S., Pogoryelov, D., Proschak, E.

(2018) ACS Infect Dis 4: 360-372

Released	2018-06-20
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Beta-lactamase VIM-2 (protein)
Unique Ligands	9NK, EDO, FMT, ZN

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7S25 \| pdb_00007s25	Download File View File

ROCK1 IN COMPLEX WITH LIGAND G4998

Ganichkin, O., Harris, S.F., Steinbacher, S.

(2022) Nat Commun 13: 6447-6447

Released	2022-10-05
Method	X-RAY DIFFRACTION 2.337 Å
Organisms	Homo sapiens
Macromolecule	Rho-associated protein kinase 1 (protein)
Unique Ligands	86G, CL

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7S26 \| pdb_00007s26	Download File View File

ROCK1 IN COMPLEX WITH LIGAND G5018

Ganichkin, O., Harris, S.F., Steinbacher, S.

(2022) Nat Commun 13: 6447-6447

Released	2022-10-05
Method	X-RAY DIFFRACTION 2.744 Å
Organisms	Homo sapiens
Macromolecule	Rho-associated protein kinase 1 (protein)
Unique Ligands	86K, EPE

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8UPS \| pdb_00008ups	Download File View File

Structure of SARS-Cov2 3CLPro in complex with Compound 5

Wu, Y., Qiang, D., Zhuang, N., Krishnamurthy, H., Klein, D.J.

(2024) J Med Chem 67: 3935-3958

Released	2024-03-06
Method	X-RAY DIFFRACTION 2.44 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase nsp5 (protein)
Unique Ligands	I70, PO4

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8UPV \| pdb_00008upv	Download File View File

Structure of SARS-Cov2 3CLPro in complex with Compound 33

Krishnamurthy, H., Zhuang, N., Qiang, D., Wu, Y., Klein, D.J.

(2024) J Med Chem 67: 3935-3958

Released	2024-03-06
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase nsp5 (protein)
Unique Ligands	X83

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8UPW \| pdb_00008upw	Download File View File

Structure of SARS-Cov2 3CLPro in complex with Compound 34

Krishnamurthy, H., Zhuang, N., Qiang, D., Wu, Y., Klein, D.J.

(2024) J Med Chem 67: 3935-3958

Released	2024-03-06
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase nsp5 (protein)
Unique Ligands	X8F

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8UTE \| pdb_00008ute	Download File View File

Structure of SARS-Cov2 3CLPro in complex with Compound 27

Krishnamurthy, H., Zhuang, N., Qiang, D., Wu, Y., Klein, D.J.

(2024) J Med Chem 67: 3935-3958

Released	2024-03-06
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase nsp5 (protein)
Unique Ligands	EDO, XKQ

1 to 10 of 10 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5A5Z | pdb_00005a5z

Approved Drugs Containing Thiols as Inhibitors of Metallo-beta- lactamases: Strategy To Combat Multidrug-Resistant Bacteria

5MWA | pdb_00005mwa

human sEH Phosphatase in complex with 3-4-3,4-dichlorophenyl-5-phenyl-1,3-oxazol-2-yl-benzoic-acid

5NBK | pdb_00005nbk

NDM-1 metallo-beta-lactamase: a parsimonious interpretation of the diffraction data

5O7N | pdb_00005o7n

Beta-lactamase VIM-2 in complex with (2R)-1-(2-Benzyl-3-mercaptopropanoyl)piperidine-2-carboxylic acid

7S25 | pdb_00007s25

ROCK1 IN COMPLEX WITH LIGAND G4998

7S26 | pdb_00007s26

ROCK1 IN COMPLEX WITH LIGAND G5018

8UPS | pdb_00008ups

Structure of SARS-Cov2 3CLPro in complex with Compound 5

8UPV | pdb_00008upv

Structure of SARS-Cov2 3CLPro in complex with Compound 33

8UPW | pdb_00008upw

Structure of SARS-Cov2 3CLPro in complex with Compound 34

8UTE | pdb_00008ute

Structure of SARS-Cov2 3CLPro in complex with Compound 27

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

5A5Z | pdb_00005a5z

5MWA | pdb_00005mwa

5NBK | pdb_00005nbk

5O7N | pdb_00005o7n

7S25 | pdb_00007s25

7S26 | pdb_00007s26

8UPS | pdb_00008ups

8UPV | pdb_00008upv

8UPW | pdb_00008upw

8UTE | pdb_00008ute