RCSB PDB: Search

1ZNS	Download File View File

Crystal structure of N-ColE7/12-bp DNA/Zn complex

Doudeva, L.G., Huang, H., Hsia, K.C., Shi, Z., Li, C.L., Shen, Y., Yuan, H.S.

(2006) Protein Sci 15: 269-280

Released	2006-03-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli str. K-12 substr. W3110
Macromolecule	Colicin E7 (protein) 5'-D(CPGPGPGPAPTPAPTPCPCPCPG)-3' (nucleic acid)
Unique Ligands	ZN

1ZNV	Download File View File

How a His-metal finger endonuclease ColE7 binds and cleaves DNA with a transition metal ion cofactor

Doudeva, L.G., Huang, H., Hsia, K.C., Shi, Z., Li, C.L., Shen, Y., Yuan, H.S.

(2006) Protein Sci 15: 269-280

Released	2006-03-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli str. K-12 substr. W3110
Macromolecule	Colicin E7 (protein) Colicin E7 immunity protein (protein)
Unique Ligands	NI, PO4

2IVH	Download File View File

Crystal structure of the nuclease domain of ColE7 (H545Q mutant) in complex with an 18-bp duplex DNA

Wang, Y.T., Yang, W.J., Li, C.L., Doudeva, L.G., Yuan, H.S.

(2007) Nucleic Acids Res 35: 584

Released	2007-01-02
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	COLCIN-E7 (protein) 5'-D(GPGPAPAPTPTPCPGPAPTP CPGPAPAPTPTPCPC)-3' (nucleic acid)
Unique Ligands	ZN

2IVK	Download File View File

Crystal structure of the periplasmic endonuclease Vvn complexed with a 16-bp DNA

Wang, Y.T., Yang, W.J., Li, C.L., Doudeva, L.G., Yuan, H.S.

(2007) Nucleic Acids Res 35: 584

Released	2007-01-02
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Vibrio vulnificus synthetic construct
Macromolecule	ENDONUCLEASE I (protein) 5'-D(APAPTPTPCPGPAPTPCPGP APAPTPTPC)-3' (nucleic acid) 5'-D(GPAPAPTPTPCPGPAPTPCP GPAPAPTPT)-3' (nucleic acid) 5'-D(GPAPAPTPTPCPGPAPTPCP GPAPAPTPTPC)-3' (nucleic acid)

Nikonowicz, E.P., Wang, J.

2LUN	Download File View File

RNA Aptamer for B. anthracis Ribosomal Protein S8

(2014) Nucleic Acids Res 42: 10776-10785

Released	2013-12-18
Method	SOLUTION NMR
Macromolecule	RNA (28-MER) (nucleic acid)

3BDL	Download File View File

Crystal structure of a truncated human Tudor-SN

Li, C.L.

(2008) Nucleic Acids Res 36: 3579-3589

Released	2008-08-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Staphylococcal nuclease domain-containing protein 1 (protein)
Unique Ligands	CIT

4P5U	Download File View File

Crystal structure of TatD

Chen, Y., Li, C.-L., Hsiao, Y.-Y., Duh, Y., Yuan, H.S.

(2014) Nucleic Acids Res 42: 10776-10785

Released	2014-08-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli K-12
Macromolecule	Tat-linked quality control protein TatD (protein)

4PE8	Download File View File

Crystal structure of TatD in complex with trinucleotide DNA

Chen, Y., Li, C.-L., Hsiao, Y.-Y., Duh, Y., Yuan, H.S.

(2014) Nucleic Acids Res 42: 10776-10785

Released	2014-08-27
Method	X-RAY DIFFRACTION 2.894 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	Tat-linked quality control protein TatD (protein) DNA (5'-D(GPCP*T)-3') (nucleic acid)

Yuan, H.S., Golzarroshan, B.

5ZF6	Download File View File

Crystal structure of the dimeric human PNPase

(2018) Nucleic Acids Res 46: 8630-8640

Released	2018-08-22
Method	X-RAY DIFFRACTION 2.796 Å
Organisms	Homo sapiens
Macromolecule	Polyribonucleotide nucleotidyltransferase 1, mitochondrial (protein)

6KY5	Download File View File

Crystal structure of a hydrolase mutant

Cui, Y.L., Chen, Y.C., Liu, X.Y., Dong, S.J., Han, J., Xiang, H., Chen, Q., Liu, H.Y., Han, X., Liu, W.D., Tang, S.Y., Wu, B.

(2020) bioRxiv

Released	2020-09-23
Method	X-RAY DIFFRACTION 1.631 Å
Organisms	Piscinibacter sakaiensis
Macromolecule	PET hydrolase (protein)
Unique Ligands	SO4

6LY3	Download File View File

PylRS C-terminus domain mutant bound with 3-Benzothienyl-L-alanine and AMPNP

(2020) Biochemistry 59: 2205-2209

Released	2020-07-08
Method	X-RAY DIFFRACTION 1.8959014841 Å
Organisms	Methanosarcina mazei
Macromolecule	Pyrrolysine--tRNA ligase (protein)
Unique Ligands	4OG, ANP, MG

6LY6	Download File View File

PylRS C-terminus domain mutant bound with 3-(1-Naphthyl)-L-alanine and AMPNP

(2020) Biochemistry 59: 2205-2209

Released	2020-07-08
Method	X-RAY DIFFRACTION 2.50013285673 Å
Organisms	Methanosarcina mazei
Macromolecule	Pyrrolysine--tRNA ligase (protein)
Unique Ligands	ALN, ANP, MG

6LY7	Download File View File

PylRS C-terminus domain mutant bound with 1-Formyl-L-tryptophan and AMPNP

(2020) Biochemistry 59: 2205-2209

Released	2020-07-08
Method	X-RAY DIFFRACTION 2.09447266796 Å
Organisms	Methanosarcina mazei
Macromolecule	Pyrrolysine--tRNA ligase (protein)
Unique Ligands	ANP, MG, TRF

6LYA	Download File View File

PylRS C-terminus domain mutant bound with 1-Methyl-L-tryptophan and AMPNP

(2020) Biochemistry 59: 2205-2209

Released	2020-07-08
Method	X-RAY DIFFRACTION 1.59070211581 Å
Organisms	Methanosarcina mazei
Macromolecule	Pyrrolysine--tRNA ligase (protein)
Unique Ligands	ANP, EDO, EXL, MG

6LYB	Download File View File

PylRS C-terminus domain mutant in complex with 3-Benzothienyl-D-alanine and AMPNP

(2020) Biochemistry 59: 2205-2209

Released	2020-07-08
Method	X-RAY DIFFRACTION 1.90366470282 Å
Organisms	Methanosarcina mazei
Macromolecule	Pyrrolysine--tRNA ligase (protein)
Unique Ligands	ANP, EXR, MG

8EBS	Download File View File

Initial DNA-lesion (Cy5) binding by XPC and TFIIH

(2023) Nature 617: 170-175

Released	2023-04-19
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 2
Unique Ligands	CA, SF4, ZN

8EBT	Download File View File

XPA repositioning Core7 of TFIIH relative to XPC-DNA lesion (Cy5)

(2023) Nature 617: 170-175

Released	2023-04-19
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 2
Unique Ligands	CA, SF4, ZN

8EBU	Download File View File

XPC release from Core7-XPA-DNA (Cy5)

(2023) Nature 617: 170-175

Released	2023-04-19
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 9 Unique nucleic acid chains: 2
Unique Ligands	SF4, ZN

8EBV	Download File View File

Initial DNA-lesion (AP) binding by XPC and TFIIH complex 1

(2023) Nature 617: 170-175

Released	2023-04-19
Method	ELECTRON MICROSCOPY 7.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 2
Unique Ligands	CA, SF4, ZN

8EBW	Download File View File

Initial DNA-lesion (AP) binding by XPC and TFIIH complex2

(2023) Nature 617: 170-175

Released	2023-04-19
Method	ELECTRON MICROSCOPY 5.6 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 2
Unique Ligands	CA, SF4, ZN

8EBX	Download File View File

XPA repositioning Core7 of TFIIH relative to XPC-DNA lesion (AP)

(2023) Nature 617: 170-175

Released	2023-04-19
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Unique protein chains: 10 Unique nucleic acid chains: 2
Unique Ligands	CA, SF4, ZN

8EBY	Download File View File

XPC release from Core7-XPA-DNA (AP)