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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Lokanath, N.K."

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Search Summary

This query matches 63 Structures.

Refinements

Structure Determination Methodology

experimental (63)

Scientific Name of Source Organism

	Pyrococcus horikoshii (16)
	Pyrococcus horikoshii OT3 (13)
	Thermus thermophilus HB8 (13)
	Helicobacter pylori 26695 (3)
	Thermus thermophilus (3)
	Bacillus sp. NG-27 (2)
	Escherichia coli K-12 (2)
	Sulfurisphaera tokodaii (2)
	Aeropyrum pernix (1)
	Aquifex aeolicus (1)

More...

Taxonomy

	Archaea (33)
	Bacteria (28)
	Eukaryota (1)
	Varidnaviria (1)

Experimental Method

X-RAY DIFFRACTION (63)

Polymer Entity Type

	Protein (63)
	DNA (1)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (5)
	1.5 - 2.0 (24)
	2.0 - 2.5 (22)
	2.5 - 3.0 (9)
	3.5 - 4.0 (1)
	4.0 - 4.5 (1)

Release Date

	2000 - 2004 (9)
	2005 - 2009 (43)
	2010 - 2014 (8)
	2015 - 2019 (3)

Enzyme Classification Name

	Hydrolases (16)
	Oxidoreductases (13)
	Transferases (10)
	Lyases (4)
	Isomerases (1)
	Ligases (1)

Symmetry Type

	Cyclic (38)
	Dihedral (22)
	Asymmetric (14)

SCOP Classification

	Alpha and beta proteins (a/b) (31)
	Alpha and beta proteins (a+b) (10)
	All beta proteins (6)
	All alpha proteins (4)
	Artifacts (1)

AllSelected

1 to 25 of 63 Structures

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1J2W	Download File View File

Tetrameric Structure of aldolase from Thermus thermophilus HB8

Lokanath, N.K., Shiromizu, I., Miyano, M., Yokoyama, S., Kuramitsu, S., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) Acta Crystallogr D Biol Crystallogr 60: 1816-1823

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermus thermophilus
Macromolecule	Aldolase protein (protein)

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1J3W	Download File View File

Structure of Gliding protein-mglB from Thermus Thermophilus HB8

Lokanath, N.K., Kunishima, N., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2004-04-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Giding protein-mglB (protein)
Unique Ligands	MES, MG, SO4

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1L1J	Download File View File

Crystal structure of the protease domain of an ATP-independent heat shock protease HtrA

Kim, D.Y., Kim, D.R., Ha, S.C., Lokanath, N.K., Hwang, H.Y., Kim, K.K.

(2003) J Biol Chem 278: 6543-6551

Released	2003-04-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermotoga maritima
Macromolecule	heat shock protease HtrA (protein)

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1SFU	Download File View File

Crystal structure of the viral Zalpha domain bound to left-handed Z-DNA

Ha, S.C., Van Quyen, D., Wu, C.A., Lowenhaupt, K., Rich, A., Kim, Y.G., Kim, K.K.

(2004) Proc Natl Acad Sci U S A 101: 14367-14372

Released	2004-08-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Yaba-like disease virus
Macromolecule	34L protein (protein) 5'-D(TCPGPCPGPCP*G)-3' (nucleic acid)

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1UB3	Download File View File

Crystal Structure of Tetrameric Structure of Aldolase from thermus thermophilus HB8

Lokanath, N.K., Miyano, M., Yokoyama, S., Kuramitsu, S., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) Acta Crystallogr D Biol Crystallogr 60: 1816-1823

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Thermus thermophilus
Macromolecule	Aldolase protein (protein)
Unique Ligands	HPD

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1UG6	Download File View File

Structure of beta-glucosidase at atomic resolution from thermus thermophilus HB8

Lokanath, N.K., Shiromizu, I., Miyano, M., Yokoyama, S., Kuramitsu, S., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2003-06-24
Method	X-RAY DIFFRACTION 0.99 Å
Organisms	Thermus thermophilus
Macromolecule	beta-glycosidase (protein)
Unique Ligands	GOL

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1V5V	Download File View File

Crystal Structure of a Component of Glycine Cleavage System: T-protein from Pyrococcus horikoshii OT3 at 1.5 A Resolution

Lokanath, N.K., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) Proteins 58: 769-773

Released	2004-10-26
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Pyrococcus horikoshii
Macromolecule	aminomethyltransferase (protein)
Unique Ligands	GOL, PEG

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1V7R	Download File View File

Structure of nucleotide triphosphate pyrophosphatase from pyrococcus horikoshii OT3

Lokanath, N.K., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) J Mol Biol 375: 1013-1025

Released	2003-12-30
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	hypothetical protein PH1917 (protein)
Unique Ligands	CIT

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1V9N	Download File View File

Structure of Malate Dehydrogenase from Pyrococcus horikoshii OT3

Lokanath, N.K., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-03-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Malate dehydrogenase (protein)
Unique Ligands	GOL, NDP

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1V9S	Download File View File

Crystal structure of TT0130 protein from Thermus thermophilus HB8

Lokanath, N.K., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-03-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermus thermophilus HB8
Macromolecule	uracil phosphoribosyltransferase (protein)
Unique Ligands	SO4

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1VE3	Download File View File

Crystal structure of PH0226 protein from Pyrococcus horikoshii OT3

Lokanath, N.K., Yamamoto, H., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2017) Acta Crystallogr F Struct Biol Commun 73: 706-712

Released	2005-05-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pyrococcus horikoshii
Macromolecule	hypothetical protein PH0226 (protein)
Unique Ligands	SAM

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1WL8	Download File View File

Crystal structure of PH1346 protein from Pyrococcus horikoshii

Lokanath, N.K., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2005-08-16
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Pyrococcus horikoshii
Macromolecule	GMP synthase [glutamine-hydrolyzing] subunit A (protein)
Unique Ligands	ACY, CL

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1WP4	Download File View File

Structure of TT368 protein from Thermus Thermophilus HB8

Lokanath, N.K., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) J Mol Biol 352: 905-917

Released	2005-08-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus HB8
Macromolecule	3-hydroxyisobutyrate dehydrogenase (protein)
Unique Ligands	NDP, SO4

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1WU2	Download File View File

Crystal Structure of molybdopterin biosynthesis moeA protein from Pyrococcus horikoshii OT3

Lokanath, N.K., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2004-12-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pyrococcus horikoshii
Macromolecule	molybdopterin biosynthesis moeA protein (protein)

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1WW8	Download File View File

Crystal Structure of malic enzyme from Pyrococcus horikoshii Ot3

Lokanath, N.K., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-03-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pyrococcus horikoshii
Macromolecule	malate oxidoreductase (protein)

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1WXQ	Download File View File

Crystal Structure of GTP binding protein from Pyrococcus horikoshii OT3

Lokanath, N.K., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-04-18
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	GTP-binding protein (protein)

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1X1E	Download File View File

Crystal Structure of TT0495 protein from Thermus thermophilus HB8

Lokanath, N.K., Terao, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-07-11
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Thermus thermophilus HB8
Macromolecule	2-deoxy-D-gluconate 3-dehydrogenase (protein)

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1YGZ	Download File View File

Crystal Structure of Inorganic Pyrophosphatase from Helicobacter pylori

Wu, C.A., Lokanath, N.K., Kim, D.Y., Park, H.J., Hwang, H.Y., Kim, S.T., Suh, S.W., Kim, K.K.

(2005) Acta Crystallogr D Biol Crystallogr 61: 1459-1464

Released	2005-11-01
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Helicobacter pylori 26695
Macromolecule	Inorganic pyrophosphatase (protein)

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2CQZ	Download File View File

Crystal Structure of PH0347 protein from Pyrococcus horikoshii OT3

Lokanath, N.K., Terao, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-08-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	177aa long hypothetical protein (protein)
Unique Ligands	NI

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2CUK	Download File View File

Crystal structure of TT0316 protein from Thermus thermophilus HB8

Lokanath, N.K., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-08-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus HB8
Macromolecule	glycerate dehydrogenase/glyoxylate reductase (protein)
Unique Ligands	NHE

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2CVZ	Download File View File

Structure of hydroxyisobutyrate dehydrogenase from thermus thermophilus HB8

Lokanath, N.K., Kunishima, N., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) J Mol Biol 352: 905-917

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermus thermophilus HB8
Macromolecule	3-hydroxyisobutyrate dehydrogenase (protein)
Unique Ligands	NDP

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2CWD	Download File View File

Crystal Structure of TT1001 protein from Thermus thermophilus HB8

Lokanath, N.K., Terao, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-09-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus thermophilus HB8
Macromolecule	low molecular weight phosphotyrosine protein phosphatase (protein)
Unique Ligands	MG

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2D0I	Download File View File

Crystal Structure PH0520 protein from Pyrococcus horikoshii OT3

Lokanath, N.K., Terao, Y., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-02-02
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	dehydrogenase (protein)

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2D13	Download File View File

Crystal Structure of PH1257 from Pyrococcus horikoshii OT3

Lokanath, N.K., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-02-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Pyrococcus horikoshii
Macromolecule	hypothetical protein PH1257 (protein)

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2D16	Download File View File

Crystal Structure of PH1918 protein from Pyrococcus horikoshii OT3

Lokanath, N.K., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-10-31
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	hypothetical protein PH1918 (protein)
Unique Ligands	GOL, NA

1 to 25 of 63 Structures

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