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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Lu, Y."

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Search Summary

This query matches 26 Structures.

Refinements

Structure Determination Methodology

experimental (26)

Scientific Name of Source Organism

	Homo sapiens (16)
	Bacillus subtilis (5)
	Drosophila melanogaster (4)
	Danio rerio (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (21)
	Bacteria (5)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (18)
	ELECTRON MICROSCOPY (8)

Polymer Entity Type

	Protein (26)
	DNA (5)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (3)
	2.5 - 3.0 (7)
	3.0 - 3.5 (8)
	3.5 - 4.0 (3)
	> 4.5 (2)

Release Date

	2010 - 2014 (10)
	2015 - 2019 (6)
	2020 - 2024 (10)

Enzyme Classification Name

	Transferases (11)
	Hydrolases (1)
	Ligases (1)

Symmetry Type

	Asymmetric (15)
	Cyclic (11)
	Dihedral (1)

SCOP Classification

	Artifacts (6)
	All alpha proteins (2)
	Alpha and beta proteins (a+b) (4)
	All beta proteins (2)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 26 Structures

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4FI9	Download File View File

Structure of human SUN-KASH complex

Wang, W.J., Shi, Z.B.

(2012) Cell Res 22: 1440-1452

Released	2012-07-18
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Homo sapiens
Macromolecule	Nesprin-2 (protein) SUN domain-containing protein 2 (protein)

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4FZA	Download File View File

Crystal structure of MST4-MO25 complex

Shi, Z.B., Zhou, Z.C.

(2013) Structure 21: 449-461

Released	2013-03-06
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Homo sapiens
Macromolecule	Calcium-binding protein 39 (protein) Serine/threonine-protein kinase MST4 (protein)
Unique Ligands	GOL

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4FZD	Download File View File

Crystal structure of MST4-MO25 complex with WSF motif

Shi, Z.B., Zhou, Z.C.

(2013) Structure 21: 449-461

Released	2013-03-06
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Homo sapiens
Macromolecule	C-terminal peptide from Serine/threonine-protein kinase MST4 (protein) Calcium-binding protein 39 (protein) Serine/threonine-protein kinase MST4 (protein)
Unique Ligands	GOL

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4FZF	Download File View File

Crystal structure of MST4-MO25 complex with DKI

Shi, Z.B., Zhou, Z.C.

(2013) Structure 21: 449-461

Released	2013-03-06
Method	X-RAY DIFFRACTION 3.64 Å
Organisms	Homo sapiens
Macromolecule	Calcium-binding protein 39 (protein) Serine/threonine-protein kinase MST4 (protein)
Unique Ligands	DKI

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4GEH	Download File View File

Crystal structure of MST4 dimerization domain complex with PDCD10

Zhang, M., Shi, Z.B., Zhou, Z.C.

(2013) Structure 21: 680-688

Released	2013-04-17
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Programmed cell death protein 10 (protein) Serine/threonine-protein kinase MST4 (protein)

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4HK1	Download File View File

Crystal Structure of PCNA from Drosophila melanogaster

Wang, K., Shi, Z.B., Zhou, Z.C.

(2013) Acta Crystallogr Sect F Struct Biol Cryst Commun 69: 387-392

Released	2013-04-10
Method	X-RAY DIFFRACTION 2.001 Å
Organisms	Drosophila melanogaster
Macromolecule	Proliferating cell nuclear antigen (protein)

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4HKD	Download File View File

Crystal structure of human MST2 SARAH domain

Liu, G.G., Shi, Z.B., Zhou, Z.C.

To be published

Released	2013-09-04
Method	X-RAY DIFFRACTION 1.503 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine-protein kinase 3 (protein)

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4KGB	Download File View File

Structure of succinyl-CoA: 3-ketoacid CoA transferase from Drosophila melanogaster

Wang, Y.C., Shi, Z.B., Zhang, M.

(2013) Acta Crystallogr Sect F Struct Biol Cryst Commun 69: 1089-1093

Released	2013-10-23
Method	X-RAY DIFFRACTION 2.64 Å
Organisms	Drosophila melanogaster
Macromolecule	Succinyl-CoA:3-ketoacid-coenzyme A transferase (protein)
Unique Ligands	SO4

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4KZG	Download File View File

Crystal structure of zebrafish MO25

Zhang, Z.Z., Shi, Z.B., Zhang, M.

(2013) Acta Crystallogr Sect F Struct Biol Cryst Commun 69: 989-993

Released	2013-09-11
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Danio rerio
Macromolecule	Zgc:86716 (protein)

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4NT4	Download File View File

Crystal structure of the kinase domain of Gilgamesh isoform I from Drosophila melanogaster

Chen, C.C., Shi, Z.B., Zhou, Z.C.

(2014) Acta Crystallogr Sect F Struct Biol Cryst Commun 70: 438-443

Released	2014-04-09
Method	X-RAY DIFFRACTION 2.86 Å
Organisms	Drosophila melanogaster
Macromolecule	Gilgamesh, isoform I (protein)
Unique Ligands	GOL, SO4

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4RV0	Download File View File

Crystal structure of TN complex

Hao, Q., Jiao, S., Shi, Z.B., Zhou, Z.C.

To be published

Released	2015-11-25
Method	X-RAY DIFFRACTION 1.998 Å
Organisms	Drosophila melanogaster
Macromolecule	Nuclear protein localization protein 4 homolog (protein) Transitional endoplasmic reticulum ATPase TER94 (protein)
Unique Ligands	SO4

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4Z8M	Download File View File

Crystal structure of the MAVS-TRAF6 complex

Shi, Z.B., Zhou, Z.

(2015) J Biol Chem 290: 26811-26820

Released	2015-09-23
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens
Macromolecule	Peptide from Mitochondrial antiviral-signaling protein (protein) TNF receptor-associated factor 6 (protein)

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4ZDR	Download File View File

Crystal structure of 14-3-3[zeta]-LKB1 fusion protein

Ding, S., Shi, Z.B.

(2015) Acta Crystallogr F Struct Biol Commun 71: 1114-1119

Released	2015-09-09
Method	X-RAY DIFFRACTION 2.899 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	14-3-3 protein zeta/delta,GGSGGS linker,Serine/threonine-protein kinase STK11 (protein)
Unique Ligands	GOL, SO4, TME

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5GZB	Download File View File

Crystal Structure of Transcription Factor TEAD4 in Complex with M-CAT DNA

He, F., Shi, Z.B., Zhou, Z.C.

(2017) Oncogene 36: 4362-4369

Released	2017-04-19
Method	X-RAY DIFFRACTION 2.704 Å
Organisms	Homo sapiens
Macromolecule	Transcriptional enhancer factor TEF-3 (protein) DNA (5'-D(GPAPGPAPGPGPAPAPTPGPCPAPA)-3') (nucleic acid) DNA (5'-D(TPTPGPCPAPTPTPCPCPTPCPTPC)-3') (nucleic acid)
Unique Ligands	GOL, PO4

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5WXN	Download File View File

Structure of the LKB1 and 14-3-3 complex

Ding, S., Shi, Z.B.

(2017) Acta Crystallogr F Struct Biol Commun 73: 196-201

Released	2017-04-19
Method	X-RAY DIFFRACTION 2.93 Å
Organisms	Homo sapiens
Macromolecule	14-3-3 protein zeta/delta (protein) Serine/threonine-protein kinase STK11 (protein)

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5XY9	Download File View File

Structure of the MST4 and 14-3-3 complex

Shi, Z.B., Zhou, Z.C.

To be published

Released	2018-07-11
Method	X-RAY DIFFRACTION 2.303 Å
Organisms	Homo sapiens
Macromolecule	14-3-3 protein zeta/delta (protein) Peptide from Serine/threonine-protein kinase 26 (protein)
Unique Ligands	GOL, PE4

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6WG3	Download File View File

Cryo-EM structure of human Cohesin-NIPBL-DNA complex

Shi, Z.B., Gao, H., Bai, X.C., Yu, H.

(2020) Science 368: 1454-1459

Released	2020-05-20
Method	ELECTRON MICROSCOPY 5.3 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 5 Unique nucleic acid chains: 2
Unique Ligands	ANP

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6WG4	Download File View File

Crystal structure of human SMC1-SMC3 hinge domain heterodimer in south-open conformation

Shi, Z.B., Yu, H.

(2020) Science 368: 1454-1459

Released	2020-05-20
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Homo sapiens
Macromolecule	Structural maintenance of chromosomes protein (protein) Structural maintenance of chromosomes protein 3 (protein)

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6WG6	Download File View File

Crystal structure of human SMC1-SMC3 hinge domain heterodimer in north-open conformation

Shi, Z.B., Yu, H.

(2020) Science 368: 1454-1459

Released	2020-05-20
Method	X-RAY DIFFRACTION 3.54 Å
Organisms	Homo sapiens
Macromolecule	Structural maintenance of chromosomes protein (protein) Structural maintenance of chromosomes protein 3 (protein) poly(dT) (nucleic acid)

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6WGE	Download File View File

Cryo-EM structure of human Cohesin-NIPBL-DNA complex without STAG1

Shi, Z.B., Gao, H., Bai, X.C., Yu, H.

(2020) Science 368: 1454-1459

Released	2020-05-20
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2
Unique Ligands	ANP, MG

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7W1M	Download File View File

Cryo-EM structure of human cohesin-CTCF-DNA complex

Shi, Z.B., Bai, X.C., Yu, H.

(2023) Mol Cell 83: 2856-2871.e8

Released	2023-05-31
Method	ELECTRON MICROSCOPY 6.5 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 6 Unique nucleic acid chains: 2
Unique Ligands	ADP, BEF, ZN

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8Y13	Download File View File

Cryo-EM structure of anti-phage defense associated DSR2 tetramer (H171A)

Li, F.X., Shi, Z.B., Wang, R.W., Xu, Q., Yang, R., Wu, Z.X.

(2024) Nat Commun 15: 6185-6185

Released	2024-09-11
Method	ELECTRON MICROSCOPY 3.18 Å
Organisms	Bacillus subtilis
Macromolecule	SIR2-like domain-containing protein (protein)

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8Y34	Download File View File

Cryo-EM structure of anti-phage defense associated DSR2 (H171A) (map2)

Wang, R.W., Xu, Q., Wu, Z.X., Li, J.L., Shi, Z.B., Li, F.X.

(2024) Nat Commun 15: 6185-6185

Released	2024-09-11
Method	ELECTRON MICROSCOPY 3.11 Å
Organisms	Bacillus subtilis
Macromolecule	SIR2-like domain-containing protein (protein)

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8Y3M	Download File View File

Cryo-EM structure of DSR2-DSAD1 complex (cross-linked)

Wang, R.W., Xu, Q., Wu, Z.X., Li, J.L., Shi, Z.B., Li, F.X.

(2024) Nat Commun 15: 6185-6185

Released	2024-09-11
Method	ELECTRON MICROSCOPY 3.25 Å
Organisms	Bacillus subtilis
Macromolecule	DSR anti-defence 1 (protein) SIR2-like domain-containing protein (protein)

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8Y3W	Download File View File

The Cryo-EM structure of anti-phage defense associated DSR2 tetramer bound with two DSAD1 inhibitors (same side)

Wang, R.W., Xu, Q., Wu, Z.X., Li, J.L., Shi, Z.B., Li, F.X.

(2024) Nat Commun 15: 6185-6185

Released	2024-09-11
Method	ELECTRON MICROSCOPY 3.49 Å
Organisms	Bacillus subtilis
Macromolecule	DSR anti-defence 1 (protein) SIR2-like domain-containing protein (protein)

1 to 25 of 26 Structures

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