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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Menard, R."

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Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	Homo sapiens (10)
	Escherichia coli str. K-12 substr. MG1655 (7)
	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (1)
	Streptococcus pyogenes (1)

Taxonomy

	Eukaryota (10)
	Bacteria (9)

Experimental Method

X-RAY DIFFRACTION (19)

Polymer Entity Type

Protein (19)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (8)
	2.5 - 3.0 (3)
	3.0 - 3.5 (2)
	4.0 - 4.5 (1)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (6)
	2005 - 2009 (2)
	2010 - 2014 (8)

Enzyme Classification Name

	Oxidoreductases (8)
	Hydrolases (11)

Symmetry Type

	Asymmetric (15)
	Cyclic (12)

SCOP Classification

	Alpha and beta proteins (a+b) (10)
	All alpha proteins (7)
	Artifacts (6)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 19 of 19 Structures

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1CJL	Download File View File

CRYSTAL STRUCTURE OF A CYSTEINE PROTEASE PROFORM

Coulombe, R., Grochulski, P., Sivaraman, J., Cygler, M.

(1996) EMBO J 15: 5492-5503

Released	1997-08-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	PROCATHEPSIN L (protein)

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1CS8	Download File View File

CRYSTAL STRUCTURE OF PROCATHEPSIN L

Cygler, M., Coulombe, R.

(1996) EMBO J 15: 5492-5503

Released	1999-08-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	HUMAN PROCATHEPSIN L (protein)

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1DEU	Download File View File

CRYSTAL STRUCTURE OF HUMAN PROCATHEPSIN X: A CYSTEINE PROTEASE WITH THE PROREGION COVALENTLY LINKED TO THE ACTIVE SITE CYSTEINE

Sivaraman, J., Nagler, D.K., Zhang, R., Menard, R., Cygler, M.

(2000) J Mol Biol 295: 939-951

Released	2000-02-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	PROCATHEPSIN X (protein)

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1MHW	Download File View File

Design of non-covalent inhibitors of human cathepsin L. From the 96-residue proregion to optimized tripeptides

Chowdhury, S., Sivaraman, J., Wang, J., Devanathan, G., Lachance, P., Qi, H., Menard, R., Lefebvre, J., Konishi, Y., Cygler, M., Sulea, T., Purisima, E.O.

(2002) J Med Chem 45: 5321-5329

Released	2002-12-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	4-biphenylacetyl-Cys-(D)Arg-Tyr-N-(2-phenylethyl) amide (protein) Cathepsin L (protein)

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1NPZ	Download File View File

Crystal structures of Cathepsin S inhibitor complexes

Pauly, T.A., Sulea, T., Ammirati, M., Sivaraman, J., Danley, D.E., Griffor, M.C., Kamath, A.V., Wang, I.K., Laird, E.R., Seddon, A.P., Menard, R., Cygler, M., Rath, V.L.

(2003) Biochemistry 42: 3203-3213

Released	2003-04-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Cathepsin S (protein)
Unique Ligands	C1P

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1NQC	Download File View File

Crystal structures of Cathepsin S inhibitor complexes

Pauly, T.A., Sulea, T., Ammirati, M., Sivaraman, J., Danley, D.E., Griffor, M.C., Kamath, A.V., Wang, I.K., Laird, E.R., Menard, R., Cygler, M., Rath, V.L.

(2003) Biochemistry 42: 3203-3213

Released	2003-04-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Cathepsin S (protein)
Unique Ligands	C4P

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1PVJ	Download File View File

Crystal structure of the Streptococcal pyrogenic exotoxin B (SpeB)- inhibitor complex

Ziomek, E., Sivaraman, J., Doran, J., Menard, R., Cygler, M.

To be published

Released	2004-09-28
Method	X-RAY DIFFRACTION 3 Å
Organisms	Streptococcus pyogenes
Macromolecule	pyrogenic exotoxin B (protein)
Unique Ligands	ZFB

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1Q7L	Download File View File

Zn-binding domain of the T347G mutant of human aminoacylase-I

Lindner, H.A., Lunin, V.V., Alary, A., Hecker, R., Cygler, M., Menard, R.

(2003) J Biol Chem 278: 44496-44504

Released	2004-01-20
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	Aminoacylase-1 (protein)
Unique Ligands	GLY, ZN

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2C0Y	Download File View File

THE CRYSTAL STRUCTURE OF A CYS25ALA MUTANT OF HUMAN PROCATHEPSIN S

Kaulmann, G., Palm, G.J., Schilling, K., Hilgenfeld, R., Wiederanders, B.

(2006) Protein Sci 15: 2619

Released	2006-11-08
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	PROCATHEPSIN S (protein)

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3BC3	Download File View File

Exploring inhibitor binding at the S subsites of cathepsin L

Chowdhury, S.F., Joseph, L., Kumar, S., Tulsidas, S.R., Bhat, S., Ziomek, E., Nard, R.M., Sivaraman, J., Purisima, E.O.

(2008) J Med Chem 51: 1361-1368

Released	2008-03-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Cathepsin L heavy and light chains (protein)
Unique Ligands	OPT

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3PVR	Download File View File

The Phenylacetyl-CoA monooxygenase PaaAC subcomplex with benzoyl-CoA

Cygler, M., Grishin, A.M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2011) J Biol Chem 286: 10735-10743

Released	2011-01-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli str. K-12 substr. MG1655
Macromolecule	Phenylacetic acid degradation protein paaA (protein) Phenylacetic acid degradation protein paaC (protein)
Unique Ligands	BYC, GOL

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3PVT	Download File View File

The Phenylacetyl-CoA monooxygenase PaaAC subcomplex with 3-hydroxybutanoyl-CoA

Cygler, M., Grishin, A.M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2011) J Biol Chem 286: 10735-10743

Released	2011-01-19
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Escherichia coli str. K-12 substr. MG1655
Macromolecule	Phenylacetic acid degradation protein paaA (protein) Phenylacetic acid degradation protein paaC (protein)
Unique Ligands	3HC, GOL

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3PVY	Download File View File

The Phenylacetyl-CoA monooxygenase PaaAC subcomplex with coenzyme A

Cygler, M., Grishin, A.M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2011) J Biol Chem 286: 10735-10743

Released	2011-01-19
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Escherichia coli str. K-12 substr. MG1655
Macromolecule	Phenylacetic acid degradation protein paaA (protein) Phenylacetic acid degradation protein paaC (protein)
Unique Ligands	COA, GOL

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3PW1	Download File View File

The Phenylacetyl-CoA monooxygenase PaaAC subcomplex with phenylacetyl-CoA

Cygler, M., Grishin, A.M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2011) J Biol Chem 286: 10735-10743

Released	2011-01-19
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Escherichia coli str. K-12 substr. MG1655
Macromolecule	Phenylacetic acid degradation protein paaA (protein) Phenylacetic acid degradation protein paaC (protein)
Unique Ligands	FAQ, GOL

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3PW8	Download File View File

The Phenylacetyl-CoA monooxygenase PaaAC subcomplex with acetyl-CoA

Cygler, M., Grishin, A.M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2011) J Biol Chem 286: 10735-10743

Released	2011-01-19
Method	X-RAY DIFFRACTION 2.97 Å
Organisms	Escherichia coli str. K-12 substr. MG1655
Macromolecule	Phenylacetic acid degradation protein paaA (protein) Phenylacetic acid degradation protein paaC (protein)
Unique Ligands	ACO

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3PWQ	Download File View File

The Phenylacetyl-CoA monooxygenase PaaAC subcomplex

Cygler, M., Grishin, A.M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2011) J Biol Chem 286: 10735-10743

Released	2011-01-19
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Escherichia coli str. K-12 substr. MG1655
Macromolecule	Phenylacetic acid degradation protein paaA (protein) Phenylacetic acid degradation protein paaC (protein)

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4II4	Download File View File

The Phenylacetyl-CoA monooxygenase - mutant PaaA E49Q K68Q - PaaC wild type subcomplex with benzoyl-CoA

Cygler, M., Grishin, A.M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

To be published

Released	2014-08-20
Method	X-RAY DIFFRACTION 2.799 Å
Organisms	Escherichia coli str. K-12 substr. MG1655
Macromolecule	1,2-phenylacetyl-CoA epoxidase, subunit A (protein) 1,2-phenylacetyl-CoA epoxidase, subunit C (protein)
Unique Ligands	BYC

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4IIT	Download File View File

The Phenylacetyl-CoA monooxygenase PaaABC subcomplex with phenylacetyl-CoA

Cygler, M., Grishin, A.M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2013) J Struct Biol 184: 147-154

Released	2013-11-06
Method	X-RAY DIFFRACTION 4.3 Å
Organisms	Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Macromolecule	Phenylacetate-CoA oxygenase subunit PaaA (protein) Phenylacetate-CoA oxygenase subunit PaaB (protein) Phenylacetate-CoA oxygenase subunit PaaC (protein)
Unique Ligands	FAQ

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7PCK	Download File View File

CRYSTAL STRUCTURE OF WILD TYPE HUMAN PROCATHEPSIN K

Sivaraman, J., Lalumiere, M., Menard, R., Cygler, M.

(1999) Protein Sci 8: 283-290

Released	1999-10-25
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (PROCATHEPSIN K) (protein)

1 to 19 of 19 Structures

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