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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Mentink-Vigier, F."

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Search Summary

This query matches 2 Structures.

Refinements

Structure Determination Methodology

experimental (2)

Scientific Name of Source Organism

	Saccharolobus solfataricus P2 (2)
	synthetic construct (1)

Taxonomy

	Archaea (2)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (2)

Polymer Entity Type

	DNA (2)
	Protein (2)

Refinement Resolution (Å)

2.5 - 3.0 (2)

Release Date

2005 - 2009 (2)

Enzyme Classification Name

Transferases (2)

Symmetry Type

Asymmetric (2)

SCOP Classification

	Alpha and beta proteins (a+b) (2)
	Multi-domain proteins (alpha and beta) (2)
	Artifacts (1)

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2V4Q	Download File View File

Post-insertion complex of the Y-family DNA polymerase Dpo4 with M1dG containing template DNA

Eoff, R.L., Stafford, J.B., Szekely, J., Rizzo, C.J., Egli, M., Guengerich, F.P., Marnett, L.J.

(2009) Biochemistry 48: 7079

Released	2009-06-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Saccharolobus solfataricus P2
Macromolecule	DNA POLYMERASE IV (protein) 5'-D(GPGPGPGPGPAPAPGPGPAP TPTPCPC)-3' (nucleic acid) 5'-D(TPCPAPC M1GPGPAPAPTPCPCP TPTPCPCPCPCP*C)-3' (nucleic acid)
Unique Ligands	CA, DGT

Explore in 3D

2V4R	Download File View File

Non-productive complex of the Y-family DNA polymerase Dpo4 with dGTP skipping the M1dG adduct to pair with the next template cytosine

Eoff, R.L., Stafford, J.B., Szekely, J., Rizzo, C.J., Egli, M., Guengerich, F.P., Marnett, L.J.

(2009) Biochemistry 48: 7079

Released	2009-06-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharolobus solfataricus P2 synthetic construct
Macromolecule	DNA POLYMERASE IV (protein) 5'-D(GPGPGPGPGPAPAPGPGPAPTPTPC)-3' (nucleic acid) 5'-D(TPCPAPCPM1GPGPAPAPTPCPCP TPTPCPCPCPCP*C)-3' (nucleic acid)
Unique Ligands	CA, DGT

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2V4Q

Post-insertion complex of the Y-family DNA polymerase Dpo4 with M1dG containing template DNA

2V4R

Non-productive complex of the Y-family DNA polymerase Dpo4 with dGTP skipping the M1dG adduct to pair with the next template cytosine