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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Rabe von Pappenheim, F."

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Search Summary

This query matches 37 Structures.

Refinements

Structure Determination Methodology

experimental (37)

Scientific Name of Source Organism

	Homo sapiens (24)
	Janthinobacterium sp. HH01 (3)
	Neisseria gonorrhoeae (3)
	Severe acute respiratory syndrome coronavirus 2 (3)
	Escherichia coli K-12 (2)
	Geobacillus stearothermophilus (1)
	Neisseria gonorrhoeae FA 1090 (1)

Taxonomy

	Eukaryota (24)
	Bacteria (10)
	Riboviria (3)

Experimental Method

X-RAY DIFFRACTION (37)

Polymer Entity Type

Protein (37)

Refinement Resolution (Å)

	0.5 - 1.0 (7)
	1.0 - 1.5 (23)
	1.5 - 2.0 (2)
	2.0 - 2.5 (3)
	2.5 - 3.0 (2)

Release Date

2020 - 2024 (37)

Enzyme Classification Name

	Transferases (34)
	Lyases (24)
	Hydrolases (3)

Symmetry Type

	Cyclic (33)
	Asymmetric (4)

SCOP Classification

	Alpha and beta proteins (a/b) (2)
	Artifacts (2)

AllSelected

1 to 25 of 37 Structures

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Explore in 3D

6TJ8 \| pdb_00006tj8	Download File View File

Escherichia coli transketolase in complex with cofactor analog 2'-methoxythiamine diphosphate

Rabe von Pappenheim, F., Tittmann, K.

(2020) Nat Chem Biol 16: 1237-1245

Released	2020-07-08
Method	X-RAY DIFFRACTION 0.921 Å
Organisms	Escherichia coli K-12
Macromolecule	Transketolase 1 (protein)
Unique Ligands	CA, EDO, NDQ

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6TJ9 \| pdb_00006tj9	Download File View File

Escherichia coli transketolase in complex with cofactor analog 2'-methoxythiamine and substrate xylulose 5-phosphate

Rabe von Pappenheim, F., Tittmann, K.

(2020) Nat Chem Biol 16: 1237-1245

Released	2020-07-08
Method	X-RAY DIFFRACTION 0.95 Å
Organisms	Escherichia coli K-12
Macromolecule	Transketolase 1 (protein)
Unique Ligands	5SP, CA, EDO, NA, NDQ

Explore in 3D

6YVK \| pdb_00006yvk	Download File View File

Human OMPD-domain of UMPS in complex with the substrate OMP at 1.25 Angstroms resolution, 0.71 MGy exposure

Tittmann, K., Rindfleisch, S., Krull, M.

(2022) Nat Catal 5: 332-341

Released	2021-11-17
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	GOL, OMP, SO4, U

Explore in 3D

6YVL \| pdb_00006yvl	Download File View File

Human OMPD-domain of UMPS in complex with the substrate OMP at 1.25 Angstroms resolution, 1.42 MGy exposure

Tittmann, K., Rindfleisch, S., Krull, M.

(2022) Nat Catal 5: 332-341

Released	2021-11-17
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	GOL, OMP, SO4, U

Explore in 3D

6YVM \| pdb_00006yvm	Download File View File

Human OMPD-domain of UMPS in complex with the substrate OMP at 1.25 Angstroms resolution, 2.13 MGy exposure

Tittmann, K., Rindfleisch, S., Krull, M.

(2022) Nat Catal 5: 332-341

Released	2021-11-17
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	GOL, OMP, SO4, U

Explore in 3D

6YVN \| pdb_00006yvn	Download File View File

Human OMPD-domain of UMPS in complex with the substrate OMP at 1.25 Angstroms resolution, 2.84 MGy exposure

Tittmann, K., Rindfleisch, S., Krull, M.

(2022) Nat Catal 5: 332-341

Released	2021-11-17
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	GOL, OMP, SO4, U

Explore in 3D

6YVO \| pdb_00006yvo	Download File View File

Human OMPD-domain of UMPS in complex with the substrate OMP at 1.25 Angstroms resolution, 3.55 MGy exposure

Tittmann, K., Rindfleisch, S., Krull, M.

(2022) Nat Catal 5: 332-341

Released	2022-02-23
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	GOL, OMP, SO4, U

Explore in 3D

6YWT \| pdb_00006ywt	Download File View File

Human OMPD-domain of UMPS (K314AcK) in complex with 6-hydroxy-UMP at 1.05 Angstroms resolution

Tittmann, K., Rindfleisch, S., Krull, M.

(2022) Nat Catal 5: 332-341

Released	2022-02-23
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	BMP, PRO

Explore in 3D

6YWU \| pdb_00006ywu	Download File View File

Human OMPD-domain of UMPS (K314AcK) in complex with UMP at 1.1 Angstroms resolution

Tittmann, K., Rindfleisch, S., Krull, M.

(2022) Nat Catal 5: 332-341

Released	2022-02-23
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	GOL, SO4, U5P

Explore in 3D

6ZWY \| pdb_00006zwy	Download File View File

OMPD-domain of human UMPS in complex with UMP at 1.0 Angstroms resolution

Tittmann, K., Rindfleisch, S.

(2022) Nat Catal 5: 332-341

Released	2022-02-23
Method	X-RAY DIFFRACTION 1 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	GOL, PRO, U5P

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6ZWZ \| pdb_00006zwz	Download File View File

Resting state structure of the OMPD-domain of human UMPS variant (K314AcK) at 1.2 Angstroms resolution

Tittmann, K., Rindfleisch, S., Krull, M.

(2022) Nat Catal 5: 332-341

Released	2022-02-23
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	SO4

Explore in 3D

6ZX0 \| pdb_00006zx0	Download File View File

OMPD-domain of human UMPS in complex with the substrate OMP at 1.25 Angstroms resolution

Tittmann, K., Rindfleisch, S., Krull, M.

(2022) Nat Catal 5: 332-341

Released	2022-02-23
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	GOL, OMP, SO4, U

Explore in 3D

6ZX1 \| pdb_00006zx1	Download File View File

OMPD-domain of human UMPS in complex with 6-Aza-UMP at 1.0 Angstroms resolution

Tittmann, K., Rindfleisch, S., Krull, M.

(2022) Nat Catal 5: 332-341

Released	2022-02-23
Method	X-RAY DIFFRACTION 1 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	PRO, SO4, UP6

Explore in 3D

6ZX2 \| pdb_00006zx2	Download File View File

OMPD-domain of human UMPS in complex with 6-carboxamido-UMP at 1.2 Angstroms resolution

Tittmann, K., Rindfleisch, S., Schimdt, T.

(2022) Nat Catal 5: 332-341

Released	2022-02-23
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	PRO, QRT, SO4

Explore in 3D

6ZX3 \| pdb_00006zx3	Download File View File

OMPD-domain of human UMPS in complex with 6-thiocarboxamido-UMP at 1.15 Angstroms resolution

Tittmann, K., Rindfleisch, S., Schimdt, T.

(2022) Nat Catal 5: 332-341

Released	2022-02-23
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	GOL, PRO, QRZ, SO4

Explore in 3D

7AM9 \| pdb_00007am9	Download File View File

OMPD-domain of human UMPS in complex with the substrate OMP at 0.99 Angstroms resolution

Tittmann, K., Rindfleisch, S., Krull, M.

(2022) Nat Catal 5: 332-341

Released	2021-11-03
Method	X-RAY DIFFRACTION 0.99 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	GOL, OMP, SO4, U

Explore in 3D

7ASQ \| pdb_00007asq	Download File View File

Orotidine 5'-monophosphate decarboxylase-domain of human UMPS in complex with the reaction product UMP at 0.95 Angstrom resolution

Rindfleisch, S., Rabe von Pappenheim, F.

(2022) Nat Catal 5: 332-341

Released	2021-11-24
Method	X-RAY DIFFRACTION 0.95 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	GOL, NA, SO4, U5P

Explore in 3D

7ODO \| pdb_00007odo	Download File View File

Neisseria gonorrhoeae transaldolase at 0.27 MGy dose

Rabe von Pappenheim, F., Wensien, M., Tittmann, K.

(2022) Nat Chem Biol 18: 368-375

Released	2022-02-02
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Neisseria gonorrhoeae
Macromolecule	Transaldolase (protein)
Unique Ligands	CIT

Explore in 3D

7ODP \| pdb_00007odp	Download File View File

Neisseria gonorrhoeae transaldolase at 2.7 MGy dose

Rabe von Pappenheim, F., Wensien, M., Tittmann, K.

(2022) Nat Chem Biol 18: 368-375

Released	2022-02-02
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Neisseria gonorrhoeae
Macromolecule	Transaldolase (protein)
Unique Ligands	CIT

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7ODQ \| pdb_00007odq	Download File View File

Neisseria gonorrhoeae transaldolase at 5.4 MGy dose

Rabe von Pappenheim, F., Wensien, M., Tittmann, K.

(2022) Nat Chem Biol 18: 368-375

Released	2022-02-02
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Neisseria gonorrhoeae
Macromolecule	Transaldolase (protein)
Unique Ligands	CIT

Explore in 3D

7OEY \| pdb_00007oey	Download File View File

Neisseria gonnorhoeae variant E93Q at 1.35 angstrom resolution

Rabe von Pappenheim, F., Wensien, M., Tittmann, K.

(2022) Nat Chem Biol 18: 368-375

Released	2022-02-02
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Neisseria gonorrhoeae FA 1090
Macromolecule	Transaldolase (protein)
Unique Ligands	GOL, NA, SIN

Explore in 3D

7OQF \| pdb_00007oqf	Download File View File

Human OMPD-domain of UMPS in complex with OMP at 1.05 Angstrom resolution, 5 minutes soaking

Rindfleisch, S., Rabe von Pappenheim, F., Tittmann, K.

(2022) Nat Catal 5: 332-341

Released	2022-04-13
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	GOL, OMP, SO4, U

Explore in 3D

7OQI \| pdb_00007oqi	Download File View File

Human OMPD-domain of UMPS in complex with substrate OMP at 1.15 Angstrom resolution, 10 minutes soaking

Rindfleisch, S., Rabe von Pappenheim, F., Tittmann, K.

(2022) Nat Catal 5: 332-341

Released	2022-04-13
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	GOL, OMP, SO4, U

Explore in 3D

7OQK \| pdb_00007oqk	Download File View File

Human OMPD-domain of UMPS in complex with substrate OMP at 1.10 Angstroms resolution, 15 minutes soaking

Rindfleisch, S., Rabe von Pappenheim, F., Tittmann, K.

(2022) Nat Catal 5: 332-341

Released	2022-04-13
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	GOL, OMP, SO4, U

Explore in 3D

7OQM \| pdb_00007oqm	Download File View File

Human OMPD-domain of UMPS in complex with substrate OMP at 1.05 Angstroms resolution, 20 minutes soaking

Rindfleisch, S., Rabe von Pappenheim, F., Tittmann, K.

(2022) Nat Catal 5: 332-341

Released	2022-04-13
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	GOL, OMP, SO4, U

1 to 25 of 37 Structures

Page 1 of 2

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

6TJ8 | pdb_00006tj8

6TJ9 | pdb_00006tj9

6YVK | pdb_00006yvk

6YVL | pdb_00006yvl

6YVM | pdb_00006yvm

6YVN | pdb_00006yvn

6YVO | pdb_00006yvo

6YWT | pdb_00006ywt

6YWU | pdb_00006ywu

6ZWY | pdb_00006zwy

6ZWZ | pdb_00006zwz

6ZX0 | pdb_00006zx0

6ZX1 | pdb_00006zx1

6ZX2 | pdb_00006zx2

6ZX3 | pdb_00006zx3

7AM9 | pdb_00007am9

7ASQ | pdb_00007asq

7ODO | pdb_00007odo

7ODP | pdb_00007odp

7ODQ | pdb_00007odq

7OEY | pdb_00007oey

7OQF | pdb_00007oqf

7OQI | pdb_00007oqi

7OQK | pdb_00007oqk

7OQM | pdb_00007oqm