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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Ray, R."

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Search Summary

This query matches 22 Structures.

Refinements

Structure Determination Methodology

experimental (22)

Scientific Name of Source Organism

	Homo sapiens (11)
	Mus musculus (11)
	Influenza A virus (7)
	synthetic construct (4)
	Macaca mulatta (3)
	Human immunodeficiency virus (1)
	Human immunodeficiency virus 1 (1)
	Influenza A virus (A/Perth/16/2009(H3N2)) (1)
	Oryctolagus cuniculus (1)
	Simiiformes sp. (1)

Taxonomy

	Eukaryota (22)
	Riboviria (10)
	other sequences (4)

Experimental Method

	ELECTRON MICROSCOPY (12)
	X-RAY DIFFRACTION (9)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (22)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (1)
	2.5 - 3.0 (7)
	3.0 - 3.5 (8)
	3.5 - 4.0 (1)
	4.0 - 4.5 (3)

Release Date

	2000 - 2004 (1)
	2010 - 2014 (1)
	2020 - 2024 (18)
	2025 - 2029 (2)

Enzyme Classification Name

Hydrolases (1)

Symmetry Type

	Asymmetric (20)
	Cyclic (2)

SCOP Classification

	All alpha proteins (1)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 22 of 22 Structures

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1LOT	Download File View File

CRYSTAL STRUCTURE OF THE COMPLEX OF ACTIN WITH VITAMIN D-BINDING PROTEIN

Head, J.F., Swamy, N., Ray, R.

(2002) Biochemistry 41: 9015-9020

Released	2002-07-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Oryctolagus cuniculus
Macromolecule	Actin, alpha skeletal muscle (protein) Vitamin D-binding protein (protein)
Unique Ligands	ATP, CA, GOL

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2MOV	Download File View File

Receptor for Advanced Glycation End Products (RAGE) Specifically Recognizes Methylglyoxal Derived AGEs.

Shekhtman, A., Xue, J., Ray, R., Singer, D., Bohme, D., Burz, D.S., Rai, V., Hoffman, R.

(2014) Biochemistry 53: 3327-3335

Released	2014-06-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Advanced glycosylation end product-specific receptor (protein)
Unique Ligands	IOR

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8F92	Download File View File

HIV Env BG505_MD39_B11 SOSIP boosting trimer in complex with B11_d77.7 mouse Fab and RM20A3 Fab

Torres, J.L., Ozorowski, G., Ward, A.B.

(2024) Science 384: eadk0582-eadk0582

Released	2024-05-15
Method	ELECTRON MICROSCOPY 3.14 Å
Organisms	Human immunodeficiency virus Macaca mulatta Mus musculus
Macromolecule	Unique protein chains: 6
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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8F9G	Download File View File

HIV Env germline targeting BG505_MD64_N332-GT5 SOSIP in complex with V3-glycan polyclonal Fab isolated from immunized BG18HCgl knock-in mice

Ozorowski, G., Torres, J.L., Ward, A.B.

(2024) Science 384: eadk0582-eadk0582

Released	2024-05-15
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Mus musculus synthetic construct
Macromolecule	BG505_MD64_N332-GT5 gp120 (protein) BG505_MD64_N332-GT5 gp41 (protein) V3-glycan epitope polyclonal Fab heavy chain (protein) V3-glycan epitope polyclonal Fab light chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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8F9M	Download File View File

HIV Env germline targeting BG505_MD64_N332-GT5 SOSIP in complex with V3-glycan polyclonal Fab isolated from immunized wild type mice, and NHP monoclonal Fab RM20A3

Ozorowski, G., Ward, A.B.

(2024) Science 384: eadk0582-eadk0582

Released	2024-05-15
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Macaca mulatta Mus musculus synthetic construct
Macromolecule	Unique protein chains: 6
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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8SX3	Download File View File

10E8-GT10.2 immunogen in complex with human Fab 10E8 and mouse Fab W6-10

Huang, J., Ozorowski, G., Ward, A.B.

(2024) Nat Immunol 25: 1073-1082

Released	2024-05-22
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	10E8 Fab heavy chain (protein) 10E8 light chain (protein) 10E8-GT10.2 immunogen (protein) W6-10 mouse Fab heavy chain (protein) W6-10 mouse light chain (protein)
Unique branched monosaccharides	NAG

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8TZN	Download File View File

Crystal structure of 10E8-GT10.2 HIV-1 MPER scaffold in complex with a non-human primate W3-01 Fab

Lee, C.C.D., Wilson, I.A.

(2024) Nat Immunol 25: 1073-1082

Released	2024-06-12
Method	X-RAY DIFFRACTION 3.11 Å
Organisms	Simiiformes sp.
Macromolecule	10E8-GT10.2 MPER scaffold (protein) W3-01 Fab Heavy Chain (protein) W3-01 Fab Light Chain (protein)

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8TZW	Download File View File

Crystal structure of 10E8-GT4 scaffold in complex with a human 10E8 inferred germline (10E8-iGL1)

Irimia, A., Wilson, I.A.

(2024) Nat Immunol 25: 1073-1082

Released	2024-06-12
Method	X-RAY DIFFRACTION 2.66 Å
Organisms	Homo sapiens
Macromolecule	10E8-GT4 epitope scaffold (protein) 10E8-IGL1 Fab Light Chain (protein) 10E8-IGL1 Fab heavy chain (protein)

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8U03	Download File View File

Crystal structure of non-glycosylated 10E8-GT10.1 scaffold in complex with a human 10E8 NGS precursor (10E8-NGS-03)

Irimia, A., Wilson, I.A.

(2024) Nat Immunol 25: 1073-1082

Released	2024-06-12
Method	X-RAY DIFFRACTION 2.72 Å
Organisms	Homo sapiens
Macromolecule	10E8-GT10.1 epitope scaffold (protein) 10E8-NGS-03 Fab Light Chain (protein) 10E8-NGS-03 Fab heavy chain (protein)
Unique Ligands	1PE, IMD

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8U08	Download File View File

Crystal structure of 10E8-GT11 scaffold in complex with a human 10E8 inferred germline (10E8-iGL1)

Irimia, A., Wilson, I.A.

(2024) Nat Immunol 25: 1073-1082

Released	2024-06-12
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Homo sapiens
Macromolecule	10E8-GT11 epitope scaffold (protein) 10E8-IGL1 heavy chain (protein) 10E8-IGL1 light chain (protein)
Unique Ligands	GOL

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8UT3	Download File View File

CryoEM structure of A/Perth/16/2009 H3 in complex with flu HA central stem VH1-18 antibody UCA6

Huang, J., Han, J., Ward, A.B.

(2024) Immunity 57: 1141-1159.e11

Released	2024-05-08
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	Hemagglutinin (protein) UCA6 HC Fv (protein) UCA6 LC Fv (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8UT4	Download File View File

CryoEM structure of A/Michigan/45/2015 H1 in complex with flu HA central stem VH1-18 antibody 09-1B12

Huang, J., Han, J., Ward, A.B.

(2024) Immunity 57: 1141-1159.e11

Released	2024-05-08
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	09-1B12 HC Fv (protein) 09-1B12 LC Fv (protein) Hemagglutinin HA1 chain (protein) Hemagglutinin HA2 chain (protein)
Unique Ligands	NAG

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8UT5	Download File View File

CryoEM structure of A/Michigan/45/2015 H1 in complex with flu HA central stem VH1-18 antibody UCA6_N55T

Huang, J., Han, J., Ward, A.B.

(2024) Immunity 57: 1141-1159.e11

Released	2024-05-08
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	Hemagglutinin HA1 chain (protein) Hemagglutinin HA2 chain (protein) UCA6_N55T HC Fv (protein) UCA6_N55T LC Fv (protein)
Unique Ligands	NAG

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8UT6	Download File View File

CryoEM structure of A/Perth/16/2009 H3 in complex with polyclonal Fab from mice immunized with H3 stem nanoparticles-15 days post immunization

Huang, J., Han, J., Ward, A.B.

(2024) Immunity 57: 1141-1159.e11

Released	2024-05-08
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Influenza A virus Mus musculus
Macromolecule	H3D15 pFab HC Fv_polyA (protein) H3D15 pFab LC Fv_polyA (protein) Hemagglutinin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8UT7	Download File View File

CryoEM structure of A/Perth/16/2009 H3 in complex with polyclonal Fab from mice immunized with H3 stem nanoparticles-28 days post immunization

Huang, J., Han, J., Ward, A.B.

(2024) Immunity 57: 1141-1159.e11

Released	2024-05-08
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Influenza A virus Mus musculus
Macromolecule	H3D28 pFab HC Fv_polyA (protein) H3D28 pFab LC Fv_polyA (protein) Hemagglutinin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8UT8	Download File View File

CryoEM structure of A/Shanghai/1/2013 H7 in complex with polyclonal Fab from mice immunized with H7 stem nanoparticles-15 days post-immunization

Huang, J., Han, J., Ward, A.B.

(2024) Immunity 57: 1141-1159.e11

Released	2024-05-08
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Influenza A virus Mus musculus
Macromolecule	H7D15 pFab HC Fv_polyA (protein) H7D15 pFab LC Fv_polyA (protein) Hemagglutinin HA1 chain (protein) Hemagglutinin HA2 chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8UT9	Download File View File

CryoEM structure of A/Shanghai/1/2013 H7 in complex with polyclonal Fab from mice immunized with H7 stem nanoparticles-28 days post immunization

Huang, J., Han, J., Ward, A.B.

(2024) Immunity 57: 1141-1159.e11

Released	2024-05-08
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Influenza A virus Mus musculus
Macromolecule	H7D28 pFab HC Fv_polyA (protein) H7D28 pFab LC Fv_polyA (protein) Hemagglutinin HA1 chain (protein) Hemagglutinin HA2 chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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8UWA	Download File View File

VH1-18 QxxV class antibody 09-1B12 bound to A/Perth/16/2009 H3N2 hemagglutinin

Maurer, D.P.

(2024) Immunity 57: 1141-1159.e11

Released	2024-05-08
Method	X-RAY DIFFRACTION 4.02 Å
Organisms	Homo sapiens Influenza A virus (A/Perth/16/2009(H3N2))
Macromolecule	09-1B12 heavy chain (protein) 09-1B12 light chain (protein) Hemagglutinin (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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8V2E	Download File View File

Crystal structure of B055 scaffold boost immunogen in complex with a mature 10E8 Fab

Cho, S.Y., Wilson, I.A.

(2024) Nat Immunol 25: 1073-1082

Released	2024-06-12
Method	X-RAY DIFFRACTION 2.62 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	10E8 EPITOPE SCAFFOLD B055 (protein) Antibody 10E8 FAB HEAVY CHAIN (protein) Antibody 10E8 FAB LIGHT CHAIN (protein)
Unique Ligands	NAG

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8VFV	Download File View File

HIV Env BG505_MD39_B16 SOSIP boosting trimer in complex with B16_d77.5 mouse Fab and RM20A3 Fab

Ozorowski, G., Torres, J.L., Ward, A.B.

(2024) Science 384: eadk0582-eadk0582

Released	2024-05-15
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Human immunodeficiency virus 1 Macaca mulatta Mus musculus
Macromolecule	Unique protein chains: 6
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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9BDH	Download File View File

Crystal structure of HIV-1 MPER scaffold in complex with antibody Fab Ab45.1

Lee, C.C.D., Wilson, I.A.

(2024) Nat Immunol 25: 1083-1096

Released	2025-02-19
Method	X-RAY DIFFRACTION 3 Å
Organisms	Mus musculus
Macromolecule	Fab 45.1 Heavy Chain (protein) Fab 45.1 Light Chain (protein) GT10.2 (protein)
Unique branched monosaccharides	NAG

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9BDI	Download File View File

Crystal structure of HIV-1 MPER scaffold in complex with antibody Fab Ab45.2

Lee, C.C.D., Wilson, I.A.

(2024) Nat Immunol 25: 1083-1096

Released	2025-02-19
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Mus musculus
Macromolecule	Fab 45.2 Heavy Chain (protein) Fab 45.2 Light Chain (protein) GT10.2 glycan KO (protein)

1 to 22 of 22 Structures

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