RCSB PDB: Search

1P1Y	Download File View File

Crystal structure of a continuous three-dimensional DNA lattice from d(GGACAGATGGGAG)

Paukstelis, P.J., Nowakowski, J., Birktoft, J.J., Seeman, N.C.

(2004) Chem Biol 11: 1119-1126

Released	2004-06-01
Method	X-RAY DIFFRACTION 2.1 Å
Macromolecule	5'-D(GPGPAP(CBR)PAPGPAP(BRU)PGPGPGPAP*G)-3' (nucleic acid)
Unique Ligands	MG

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309D	Download File View File

A DNA DECAMER WITH A STICKY END: THE CRYSTAL STRUCTURE OF D-CGACGATCGT

Qiu, H.X., Dewan, J.C., Seeman, N.C.

(1997) J Mol Biol 267: 881-898

Released	1997-01-22
Method	X-RAY DIFFRACTION 2.6 Å
Macromolecule	DNA (5'-D(CPGPAPCPGPAPTPCPGPT)-3') (nucleic acid)

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3GBI	Download File View File

The Rational Design and Structural Analysis of a Self-Assembled Three-Dimensional DNA Crystal

Birktoft, J.J., Zheng, J., Seeman, N.C.

(2009) Nature 461: 74-77

Released	2009-09-01
Method	X-RAY DIFFRACTION 4.018 Å
Macromolecule	DNA (5'-D(GPAPGPCPAPGPCPCPTPGPTPAPCPGPGPAPCPAPTPCPA)-3') (nucleic acid) DNA (5'-D(TPCPTPGPAPTPGPT)-3') (nucleic acid) DNA (5'-D(PCPCPGPTPAPCPA)-3') (nucleic acid) DNA (5'-D(PGPGPCPTPGPC)-3') (nucleic acid)

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3NAO	Download File View File

A DNA Crystal Designed to Contain Two Molecules per Asymmetric Unit Cell

Wang, T., Sha, R., Birktoft, J.J., Zheng, J., Mao, M., Seeman, N.C.

(2010) J Am Chem Soc 132: 15471-15473

Released	2011-11-30
Method	X-RAY DIFFRACTION 5.03 Å
Macromolecule	Unique nucleic acid chains: 8

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3UBI	Download File View File

The Absence of Tertiary Interactions in a Self-Assembled DNA Crystal Structure

Nguyen, N., Birktoft, J.J., Sha, R., Wang, T., Zheng, J., Constantinou, P.E., Ginell, S.L., Chen, Y., Mao, C., Seeman, N.C.

(2012) J Mol Recognit 25: 234-237

Released	2012-05-16
Method	X-RAY DIFFRACTION 6.8046 Å
Macromolecule	DNA (5'-D(GPAPGPCPAPGPCPCPCPGPTPAPCPTPCPG)-3') (nucleic acid) DNA (5'-D(TPCPTPGPAPTPGPAPGPGPCPTPGPC)-3') (nucleic acid) DNA (5'-D(PCPCPGPAPGPTPAPCPGPAPCPGPAPCPAPAPG)-3') (nucleic acid) DNA (5'-D(PGPCPTPTPGPTPCPGPTPTPCPAPTPCPA)-3') (nucleic acid)

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5EOS	Download File View File

Crystallizing Strained DNA: Self-Assembly of 3D Crystals Containing a Torsionally-Stressed Component

Hernandez, C., Birktoft, J.J., Seeman, N.C.

(2017) Cell Chem Biol

Released	2017-08-09
Method	X-RAY DIFFRACTION 4.7 Å
Organisms	synthetic construct
Macromolecule	DNA (5'-D(TPCPTPGPAPTPGPTPGPCPTPGPC)-3') (nucleic acid) DNA (5'-D(PAPCPGPGPAPCPAPTPCPA)-3') (nucleic acid) DNA (5'-D(PCPAPCPAPCPCPGPT)-3') (nucleic acid) DNA (5'-D(PGPAPGPCPAPGPCPTPGPTPG)-3') (nucleic acid)

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5I36	Download File View File

Crystal structure of color device state A

Hao, Y., Kristiansen, M., Sha, R., Birktoft, J., Mao, C., Seeman, N.C.

(2017) Nat Chem 9: 824-827

Released	2017-01-18
Method	X-RAY DIFFRACTION 5.123 Å
Organisms	synthetic construct
Macromolecule	Unique nucleic acid chains: 7

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5I6Q	Download File View File

Crystal structure of color device state B

Hao, Y., Birktoft, J., Seeman, N.C.

(2017) Nat Chem 9: 824-827

Released	2017-01-18
Method	X-RAY DIFFRACTION 4.912 Å
Organisms	synthetic construct
Macromolecule	Unique nucleic acid chains: 8

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5I6T	Download File View File

Crystal structure of color device state C

Hao, Y., Birktoft, J., Seeman, N.C.

(2017) Nat Chem 9: 824-827

Released	2017-01-18
Method	X-RAY DIFFRACTION 5.283 Å
Organisms	synthetic construct
Macromolecule	Unique nucleic acid chains: 8

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5KEK	Download File View File

Structure Determination of a Self-Assembling DNA Crystal

Simmons, C.R., Birktoft, J.J., Seeman, N.C., Yan, H.

(2016) J Am Chem Soc 138: 10047-10054

Released	2016-08-10
Method	X-RAY DIFFRACTION 3.098 Å
Organisms	Melogramma gyrosum
Macromolecule	DNA (5'-D(GPAPGPCPAPGPAPCPCPTPGPAPCPGPAPCPAPCPTPCPA)-3') (nucleic acid) DNA (5'-D(TPCPTPGPAPGPTPGPT)-3') (nucleic acid) DNA (5'-D(PCPGPTPCPA)-3') (nucleic acid) DNA (5'-D(PGPGPTPCPTPGPC)-3') (nucleic acid)
Unique Ligands	CAC

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5KEO	Download File View File

Structure Determination of a Self-Assembling DNA Crystal

Simmons, C.R., Birktoft, J.J., Seeman, N.C., Yan, H.

(2016) J Am Chem Soc 138: 10047-10054

Released	2016-08-10
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Melogramma gyrosum
Macromolecule	DNA (5'-D(GPAPGPCPAPGPAPCPCPTPGPAPCPGPAPCPAPCPTPCPA)-3') (nucleic acid) DNA (5'-D(TPCPTPGPAPGPTPGPT)-3') (nucleic acid) DNA (5'-D(PCPGPTPCPA)-3') (nucleic acid) DNA (5'-D(PGPGPTPCPTPGPC)-3') (nucleic acid)
Unique Ligands	CAC

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5W6W	Download File View File

Designing Higher Resolution Self-Assembled 3D DNA Crystals via Strand Terminus Modifications

Hernandez, C., Birktoft, J.J., Seeman, N.C.

To be published

Released	2018-06-27
Method	X-RAY DIFFRACTION 3.06 Å
Organisms	synthetic construct
Macromolecule	DNA (5'-D(GPAPGPCPAPGPCPCPTPGPTPAPCPGPGPAPCPAPTPCPA)-3') (nucleic acid) DNA (5'-D(PCPCPGPTPAPCPA)-3') (nucleic acid) DNA (5'-D(PCPTPGPAPTPGPT)-3') (nucleic acid) DNA (5'-D(PGPGPCPTPGPCPT)-3') (nucleic acid)

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7R96	Download File View File

Self-Assembled 3D DNA Hexagonal Tensegrity Triangle

Lu, B., Vecchioni, S., Ohayon, Y.P., Sha, R., Mao, C., Seeman, N.C.

(2021) ACS Nano 15: 16788-16793

Released	2021-10-20
Method	X-RAY DIFFRACTION 5.68 Å
Organisms	synthetic construct
Macromolecule	DNA (5'-D(APGPGPCPAPGPCPCPTPGPTPAPCPGPGPAPCPAPTPCPA)-3') (nucleic acid) DNA (5'-D(TPCPTPGPAPTPGPT)-3') (nucleic acid) DNA (5'-D(PCPCPGPTPAPCPA)-3') (nucleic acid) DNA (5'-D(PGPGPCPTPGPC)-3') (nucleic acid)

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7SD6	Download File View File

[T:Hg2+:T] Metal-mediated DNA base pair in a self-assembling rhombohedral lattice

Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.

(2023) Adv Mater e2201938-e2201938

Released	2022-10-05
Method	X-RAY DIFFRACTION 3.53 Å
Organisms	synthetic construct
Macromolecule	DNA (5'-D(GPAPGPCPAPGPCPCPTPGPTPTPTPGPGPAPCPAPTPCPA)-3') (nucleic acid) DNA (5'-D(PCPCPAPTPAPCPA)-3') (nucleic acid) DNA (5'-D(PCPTPGPAPTPGPT)-3') (nucleic acid) DNA (5'-D(PGPGPCPTPGPCPT)-3') (nucleic acid)
Unique Ligands	HG

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7SD7	Download File View File

[C:Hg2+:T] Metal-mediated DNA base pair in a self-assembling rhombohedral lattice

Vecchioni, S., Lu, B., Seeman, N.C., Sha, R., Ohayon, Y.P.

(2023) Adv Mater e2201938-e2201938

Released	2022-10-05
Method	X-RAY DIFFRACTION 3.68 Å
Organisms	synthetic construct
Macromolecule	DNA (5'-D(GPAPGPCPAPGPCPCPTPGPTPCPTPGPGPAPCPAPTPCPA)-3') (nucleic acid) DNA (5'-D(TPCPTPGPAPTPGPT)-3') (nucleic acid) DNA (5'-D(PCPCPAPTPAPCPA)-3') (nucleic acid) DNA (5'-D(PGPGPCPTPGPC)-3') (nucleic acid)
Unique Ligands	HG

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7SD8	Download File View File

[U:Hg2+:U] Metal-mediated DNA base pair in a self-assembling rhombohedral lattice

Vecchioni, S., Lu, B., Seeman, N.C., Sha, R., Ohayon, Y.P.

(2023) Adv Mater e2201938-e2201938

Released	2022-10-05
Method	X-RAY DIFFRACTION 2.94 Å
Organisms	synthetic construct
Macromolecule	DNA (5'-D(GPAPGPCPAPGPCPCPTPGPTPUPTPGPGPAPCPAPTPCPA)-3') (nucleic acid) DNA (5'-D(PCPCPAPUPAPCPA)-3') (nucleic acid) DNA (5'-D(PCPTPGPAPTPGPT)-3') (nucleic acid) DNA (5'-D(PGPGPCPTPGPCPT)-3') (nucleic acid)
Unique Ligands	HG

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7SDF	Download File View File

[C:Ag+:S] Metal-mediated DNA base pair in a self-assembling rhombohedral lattice

Vecchioni, S., Lu, B., Seeman, N.C., Sha, R., Ohayon, Y.P.

(2023) Adv Mater e2201938-e2201938

Released	2022-10-05
Method	X-RAY DIFFRACTION 3.46 Å
Organisms	synthetic construct
Macromolecule	DNA (5'-D(GPAPGPCPAPGPCPCPTPGPTPCPTPGPGPAPCPAPTPCPA)-3') (nucleic acid) DNA (5'-D(PCPCPAP(IMC)PAPCPA)-3') (nucleic acid) DNA (5'-D(PCPTPGPAPTPGPT)-3') (nucleic acid) DNA (5'-D(PGPGPCPTPGPCPT)-3') (nucleic acid)
Unique Ligands	AG

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7SDG	Download File View File

[C:Ag+:C] Metal-mediated DNA base pair in a self-assembling rhombohedral lattice

Vecchioni, S., Lu, B., Seeman, N.C., Sha, R., Ohayon, Y.P.

(2023) Adv Mater e2201938-e2201938

Released	2022-10-05
Method	X-RAY DIFFRACTION 3.63 Å
Organisms	synthetic construct
Macromolecule	DNA (5'-D(GPAPGPCPAPGPCPCPTPGPTPCPTPGPGPAPCPAPTPCPA)-3') (nucleic acid) DNA (5'-D(PCPCPAPCPAPCPA)-3') (nucleic acid) DNA (5'-D(PCPTPGPAPTPGPT)-3') (nucleic acid) DNA (5'-D(PGPGPCPTPGPCPT)-3') (nucleic acid)
Unique Ligands	AG

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7SDH	Download File View File

[S:Ag+:S] Metal-mediated DNA base pair in a self-assembling rhombohedral lattice

Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.

(2023) Adv Mater e2201938-e2201938

Released	2022-10-05
Method	X-RAY DIFFRACTION 4.05 Å
Organisms	synthetic construct
Macromolecule	DNA (5'-D(GPAPGPCPAPGPCPCPTPGPTP(IMC)PTPGPGPAPCPAPTPCPA)-3') (nucleic acid) DNA (5'-D(PCPCPAP(IMC)PAPCPA)-3') (nucleic acid) DNA (5'-D(PCPTPGPAPTPGPT)-3') (nucleic acid) DNA (5'-D(PGPGPCPTPGPCPT)-3') (nucleic acid)
Unique Ligands	AG

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7SDI	Download File View File

[T:Hg2+:U] Metal-mediated DNA base pair in a self-assembling rhombohedral lattice

Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.

(2023) Adv Mater e2201938-e2201938

Released	2022-10-05
Method	X-RAY DIFFRACTION 3.58 Å
Organisms	synthetic construct
Macromolecule	DNA (5'-D(GPAPGPCPAPGPCPCPTPGPTPTPTPGPGPAPCPAPTPCPA)-3') (nucleic acid) DNA (5'-D(PCPCPAPUPAPCPA)-3') (nucleic acid) DNA (5'-D(PCPTPGPAPTPGPT)-3') (nucleic acid) DNA (5'-D(PGPGPCPTPGPCPT)-3') (nucleic acid)
Unique Ligands	HG

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7SDJ	Download File View File

[mC:Ag+:mC] Metal-mediated DNA base pair in a self-assembling rhombohedral lattice

Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.

(2023) Adv Mater e2201938-e2201938

Released	2022-10-05
Method	X-RAY DIFFRACTION 4 Å
Organisms	synthetic construct
Macromolecule	DNA (5'-D(GPAPGPCPAPGPCPCPTPGPTP(5CM)PTPGPGPAPCPAPTPCPA)-3') (nucleic acid) DNA (5'-D(PCPCPAP(5CM)PAPCPA)-3') (nucleic acid) DNA (5'-D(PCPTPGPAPTPGPT)-3') (nucleic acid) DNA (5'-D(PGPGPCPTPGPCPT)-3') (nucleic acid)
Unique Ligands	AG

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7SDK	Download File View File

[mC:Ag+:S] Metal-mediated DNA base pair in a self-assembling rhombohedral lattice

Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.

(2023) Adv Mater e2201938-e2201938

Released	2022-10-05
Method	X-RAY DIFFRACTION 3.86 Å
Organisms	synthetic construct
Macromolecule	DNA (5'-D(GPAPGPCPAPGPCPCPTPGPTP(5CM)PTPGPGPAPCPAPTPCPA)-3') (nucleic acid) DNA (5'-D(PCPCPAP(IMC)PAPCPA)-3') (nucleic acid) DNA (5'-D(PCPTPGPAPTPGPT)-3') (nucleic acid) DNA (5'-D(PGPGPCPTPGPCPT)-3') (nucleic acid)
Unique Ligands	AG

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7SDL	Download File View File

[S:Ag+:T] Metal-mediated DNA base pair in a self-assembling rhombohedral lattice

Lu, B., Vecchioni, S., Seeman, N.C., Sha, R., Ohayon, Y.P.

(2023) Adv Mater e2201938-e2201938

Released	2022-10-05
Method	X-RAY DIFFRACTION 4.37 Å
Organisms	synthetic construct
Macromolecule	DNA (5'-D(GPAPGPCPAPGPCPCPTPGPTP(IMC)PTPGPGPAPCPAPTPCPA)-3') (nucleic acid) DNA (5'-D(PCPCPAPTPAPCPA)-3') (nucleic acid) DNA (5'-D(PCPTPGPAPTPGPT)-3') (nucleic acid) DNA (5'-D(PGPGPCPTPGPCPT)-3') (nucleic acid)
Unique Ligands	AG

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7SDM	Download File View File

[U:Ag+:S] Metal-mediated DNA base pair in a self-assembling rhombohedral lattice

Vecchioni, S., Lu, B., Seeman, N.C., Sha, R., Ohayon, Y.P.

(2023) Adv Mater e2201938-e2201938

Released	2022-10-05
Method	X-RAY DIFFRACTION 4.01 Å
Organisms	synthetic construct
Macromolecule	DNA (5'-D(GPAPGPCPAPGPCPCPTPGPTPUPTPGPGPAPCPAPTPCPA)-3') (nucleic acid) DNA (5'-D(PCPCPAP(IMC)PAPCPA)-3') (nucleic acid) DNA (5'-D(PCPTPGPAPTPGPT)-3') (nucleic acid) DNA (5'-D(PGPGPCPTPGPCPT)-3') (nucleic acid)
Unique Ligands	AG

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7SDN	Download File View File

[C:Ag+:U] Metal-mediated DNA base pair in a self-assembling rhombohedral lattice

Vecchioni, S., Lu, B., Seeman, N.C., Sha, R., Ohayon, Y.P.

(2023) Adv Mater e2201938-e2201938

Released	2022-10-05
Method	X-RAY DIFFRACTION 4.32 Å
Organisms	synthetic construct
Macromolecule	DNA (5'-D(GPAPGPCPAPGPCPCPTPGPTPCPTPGPGPAPCPAPTPCPA)-3') (nucleic acid) DNA (5'-D(PCPCPAPUPAPCPA)-3') (nucleic acid) DNA (5'-D(PCPTPGPAPTPGPT)-3') (nucleic acid) DNA (5'-D(PGPGPCPTPGPCPT)-3') (nucleic acid)
Unique Ligands	AG

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