RCSB PDB: Search

3TCL	Download File View File

Crystal Structure of HIV-1 Neutralizing Antibody CH04

Louder, R.K., McLellan, J.S., Pancera, M., Yang, Y., Zhang, B., Bonsignori, M., Kwong, P.D.

(2011) Nature 480: 336-343

Released	2011-11-30
Method	X-RAY DIFFRACTION 1.906 Å
Organisms	Homo sapiens
Macromolecule	CH04 Heavy Chain Fab (protein) CH04 Light Chain Fab (protein)
Unique Ligands	IMD

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3U1S	Download File View File

Crystal structure of human Fab PGT145, a broadly reactive and potent HIV-1 neutralizing antibody

Julien, J.-P., Diwanji, D., Burton, D.R., Wilson, I.A.

(2011) Nature 480: 336-343

Released	2011-12-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Fab PGT145 Heavy chain (protein) Fab PGT145 Light chain (protein)
Unique Ligands	GOL, SO4

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3U2S	Download File View File

Crystal Structure of PG9 Fab in Complex with V1V2 Region from HIV-1 strain ZM109

McLellan, J.S., Pancera, M., Kwong, P.D.

(2011) Nature 480: 336-343

Released	2011-11-30
Method	X-RAY DIFFRACTION 1.797 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Envelope glycoprotein gp120 (protein) PG9 heavy chain (protein) PG9 light chain (protein)
Unique Ligands	BU3, NAG, SO4
Unique branched monosaccharides	BMA, MAN, NAG

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3U36	Download File View File

Crystal Structure of PG9 Fab

McLellan, J.S., Kwong, P.D.

(2011) Nature 480: 336-343

Released	2011-11-30
Method	X-RAY DIFFRACTION 3.281 Å
Organisms	Homo sapiens
Macromolecule	PG9 Fab heavy chain (protein) PG9 Fab light chain (protein)
Unique Ligands	SO4

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3U46	Download File View File

CH04H/CH02L P212121

Louder, R., Pancera, M., McLellan, J.S., Kwong, P.D.

(2011) Nature 480: 336-343

Released	2011-11-30
Method	X-RAY DIFFRACTION 2.906 Å
Organisms	Homo sapiens
Macromolecule	CH02 Light chain Fab (protein) CH04 Heavy chain Fab (protein)

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3U4B	Download File View File

CH04H/CH02L Fab P4

Pancera, M., Louder, R., Mclellan, J.S., KWong, P.D.

(2011) Nature 480: 336-343

Released	2011-11-30
Method	X-RAY DIFFRACTION 2.893 Å
Organisms	Homo sapiens
Macromolecule	CH02 Light chain (protein) CH04 Heavy chain (protein)

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3U4E	Download File View File

Crystal Structure of PG9 Fab in Complex with V1V2 Region from HIV-1 strain CAP45

Gorman, J., McLellan, J., Pancera, M., Kwong, P.D.

(2011) Nature 480: 336-343

Released	2011-11-30
Method	X-RAY DIFFRACTION 2.185 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	PG9 Heavy Chain (protein) PG9 Light Chain (protein) V1V2 region of HIV-1 on 1FD6 scaffold (protein)
Unique Ligands	SO4
Unique branched monosaccharides	BMA, MAN, NAG

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4I3R	Download File View File

Crystal structure of the outer domain of HIV-1 gp120 in complex with VRC-PG04 space group P3221

Joyce, M.G., Biertumpfel, C., Nabel, G.J., Kwong, P.D.

(2013) J Virol 87: 2294-2306

Released	2013-01-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Human immunodeficiency virus
Macromolecule	Heavy chain of VRC-PG04 Fab (protein) Light chain of VRC-PG04 Fab (protein) Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) (protein)
Unique Ligands	NAG

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4I3S	Download File View File

Crystal structure of the outer domain of HIV-1 gp120 in complex with VRC-PG04 space group P21

Joyce, M.G., Biertumpfel, C., Nabel, G.J., Kwong, P.D.

(2013) J Virol 87: 2294-2306

Released	2013-01-09
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens Human immunodeficiency virus
Macromolecule	Heavy chain of VRC-PG04 Fab (protein) Light chain of VRC-PG04 Fab (protein) Outer domain of HIV-1 gp120 (KER2018 OD4.2.2) (protein)
Unique Ligands	CA

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4J6R	Download File View File

Crystal structure of broadly and potently neutralizing antibody VRC23 in complex with HIV-1 gp120

Zhou, T., Moquin, S., Kwong, P.D.

(2013) Science 340: 751-756

Released	2013-05-08
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Envelope glycoprotein gp160 (protein) HEAVY CHAIN OF ANTIBODY VRC23 (protein) LIGHT CHAIN OF ANTIBODY VRC23 (protein)
Unique Ligands	BU3, CA, EDO, MPD, NAG, TRS

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4JAM	Download File View File

Crystal structure of broadly neutralizing anti-hiv-1 antibody ch103

Zhou, T., Moquin, S., Zheng, A., Srivatsan, S., Kwong, P.D.

(2013) Nature 496: 469-476

Released	2013-04-03
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	ANTIGEN BINDING FRAGMENT OF HEAVY CHAIN of CH103 (protein) ANTIGEN BINDING FRAGMENT OF LIGHT CHAIN of CH103 (protein)
Unique Ligands	EDO, GOL, SO4

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4JAN	Download File View File

crystal structure of broadly neutralizing antibody CH103 in complex with HIV-1 gp120

Zhou, T., Moquin, S., Zheng, A., Srivatsan, S., Kwong, P.D.

(2013) Nature 496: 469-476

Released	2013-04-03
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	ANTIGEN BINDING FRAGMENT OF HEAVY CHAIN of CH103 (protein) ANTIGEN BINDING FRAGMENT OF LIGHT CHAIN of CH103 (protein) ENVELOPE GLYCOPROTEIN GP120 of HIV-1 clade C (protein)
Unique Ligands	GOL, NA, NAG

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4JB9	Download File View File

Crystal structure of antibody VRC06 in complex with HIV-1 gp120 core

Kwon, Y.D., Zhou, T., Srivatsan, S., Kwong, P.D.

(2013) Science 340: 751-756

Released	2013-05-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	antibody VRC06 heavy chain (protein) antibody VRC06 light chain (protein) clade A/E 93TH057 HIV-1 gp120 core (protein)
Unique Ligands	NAG

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4JPW	Download File View File

Crystal structure of broadly and potently neutralizing antibody 12a21 in complex with hiv-1 strain 93th057 gp120 mutant

Acharya, P., Luongo, T., Zhou, T., Kwong, P.D.

(2013) Cell 153: 126-138

Released	2013-04-17
Method	X-RAY DIFFRACTION 2.904 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	HEAVY CHAIN OF ANTIBODY 12A21 (protein) HIV-1 CLADE A/E STRAIN 73TH057 GP120 WITH MUTATION H375S (protein) LIGHT CHAIN OF ANTIBODY 12A21 (protein)
Unique Ligands	EPE, NAG

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4LSP	Download File View File

Crystal structure of broadly and potently neutralizing antibody VRC-CH31 in complex with HIV-1 clade A/E gp120 93TH057

Zhou, T., Moquin, S., Kwong, P.D.

(2013) Immunity 39: 245-258

Released	2013-09-04
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	HEAVY CHAIN OF ANTIBODY VRC-CH31 (protein) HIV-1 CLADE A/E STRAIN 93TH057 GP120 (protein) LIGHT CHAIN OF ANTIBODY VRC-CH31 (protein)
Unique Ligands	EDO, NA, NAG, PEG, SO4
Unique branched monosaccharides	BMA, NAG

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4LSQ	Download File View File

Crystal structure of broadly and potently neutralizing antibody VRC-CH31 in complex with HIV-1 clade A/E gp120 93TH057 with LOOP D and Loop V5 from clade A strain 3415_v1_c1

Zhou, T., Moquin, S., Kwong, P.D.

(2013) Immunity 39: 245-258

Released	2013-08-21
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	ENVELOPE GLYCOPROTEIN GP120 WITH LOOP D AND V5 FROM STRAIN 3415_V1_C1 (protein) HEAVY CHAIN OF ANTIBODY VRC-CH31 (protein) LIGHT CHAIN OF ANTIBODY VRC-CH31 WITH N70D MUTATION (protein)
Unique Ligands	BU3, CD, CL, NA, NAG

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4LSR	Download File View File

Crystal structure of broadly and potently neutralizing antibody VRC-CH31 in complex with HIV-1 clade A/E stran 93TH057 gp120 with LOOP D and Loop V5 from clade A strain KER_2018_11

Zhou, T., Moquin, S., Kwong, P.D.

(2013) Immunity 39: 245-258

Released	2013-08-21
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	ENVELOPE GLYCOPROTEIN GP120 WITH LOOP D AND V5 FROM STRAIN ker_2018_11 (protein) HEAVY CHAIN OF ANTIBODY VRC-CH31 (protein) LIGHT CHAIN OF ANTIBODY VRC-CH31 (N70D MUTATION) (protein)
Unique Ligands	NAG, SO4

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4LSS	Download File View File

Crystal structure of broadly and potently neutralizing antibody VRC01 in complex with HIV-1 clade A strain KER_2018_11 gp120

Zhou, T., Moquin, S., Kwong, P.D.

(2013) Immunity 39: 245-258

Released	2013-08-21
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	HEAVY CHAIN OF ANTIBODY VRC01 (protein) LIGHT CHAIN OF ANTIBODY VRC01 with N72T mutation (protein) envelope glycoprotein GP120 (protein)
Unique Ligands	EPE, IPA, NA, NAG

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4LST	Download File View File

Crystal structure of broadly and potently neutralizing antibody VRC01 in complex with HIV-1 clade C strain ZM176.66 gp120

Zhou, T., Moquin, S., Kwong, P.D.

(2013) Immunity 39: 245-258

Released	2013-08-21
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	ENVELOPE GLYCOPROTEIN GP120 of HIV-1 clade C (protein) HEAVY CHAIN OF ANTIBODY VRC01 (protein) LIGHT CHAIN OF ANTIBODY VRC01 (protein)
Unique Ligands	NAG

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4LSU	Download File View File

Crystal structure of broadly and potently neutralizing antibody VRC-PG20 in complex with HIV-1 clade A/E 93TH057 gp120

Zhou, T., Moquin, S., Kwong, P.D.

(2013) Immunity 39: 245-258

Released	2013-08-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	HEAVY CHAIN OF ANTIBODY VRC-PG20 (protein) HIV-1 CLADE A/E STRAIN 93TH057 GP120 (protein) LIGHT CHAIN OF ANTIBODY VRC-PG20 (protein)
Unique Ligands	CL, EDO, EPE, NAG

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4LSV	Download File View File

Crystal structure of broadly and potently neutralizing antibody 3BNC117 in complex with HIV-1 clade C C1086 gp120

Zhou, T., Moquin, S., Kwong, P.D.

(2013) Immunity 39: 245-258

Released	2013-08-21
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	HEAVY CHAIN OF ANTIBODY 3BNC117 (protein) LIGHT CHAIN OF ANTIBODY 3BNC117 (protein) envelope glycoprotein GP120 (protein)
Unique Ligands	IMD, NAG

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4RWY	Download File View File

Crystal structure of VH1-46 germline-derived CD4-binding site-directed antibody 8ANC131 in complex with HIV-1 clade B YU2 gp120

Acharya, P., Luongo, T.S., Kwong, P.D.

(2015) Cell 161: 1280-1292

Released	2015-07-01
Method	X-RAY DIFFRACTION 2.128 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Antibody 8ANC131 Heavy chain (protein) Antibody 8ANC131 Light chain (protein) HIV-1 YU2 gp120 (protein)
Unique Ligands	EDO, EPE, NA, NAG

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4RX4	Download File View File

Crystal structure of VH1-46 germline-derived CD4-binding site-directed antibody 8ANC134 in complex with HIV-1 clade A Q842.d12 gp120

Zhou, T., Acharya, P., Moquin, S., Kwong, P.D.

(2015) Cell 161: 1280-1292

Released	2015-07-01
Method	X-RAY DIFFRACTION 3.45 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	8ANC134 Heavy chain (protein) 8ANC134 Light Chain (protein) HIV-1 Clade A Q842.d12 gp120 (protein)
Unique Ligands	EDO, NAG, SO4

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4YDI	Download File View File

Crystal structure of broad and potently neutralizing VRC01-class antibody Z258-VRC27.01, isolated from human donor Z258, in complex with HIV-1 gp120 from clade A strain Q23.17

Zhou, T., Srivatsan, S., Kwong, P.D.

(2015) Cell 161: 1280-1292

Released	2015-06-03
Method	X-RAY DIFFRACTION 3.452 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Envelope glycoprotein gp160 (protein) HEAVY CHAIN OF ANTIBODY Z258-VRC27.01 (protein) LIGHT CHAIN OF ANTIBODY Z258-VRC27.01 (protein)
Unique Ligands	EDO, NAG, SO4

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4YDJ	Download File View File

Crystal structure of broadly and potently neutralizing antibody 44-VRC13.01 in complex with HIV-1 clade AE strain 93TH057 gp120

Zhou, T., Moquin, S., Kwong, P.D.

(2015) Cell 161: 1280-1292

Released	2015-06-03
Method	X-RAY DIFFRACTION 2.308 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Envelope glycoprotein gp160,Envelope glycoprotein gp160 (protein) HEAVY CHAIN OF ANTIBODY 44-VRC13.01 (protein) LIGHT CHAIN OF ANTIBODY 44-VRC13.01 (protein)
Unique Ligands	BU3, CL, IPA, NA, NAG, PEG

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