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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

QUERY: Citation Author = "Suda, K."

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This query matches 42 Structures.

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4GZR	Download File View File

Crystal structure of the Mycobacterium tuberculosis H37Rv EsxOP (Rv2346c-Rv2347c) complex in space group C2221

Arbing, M.A., Chan, S., He, Q., Harris, L., Zhou, T.T., Kuo, E., Ahn, C.J., Eisenberg, D., TB Structural Genomics Consortium (TBSGC), Integrated Center for Structure and Function Innovation (ISFI)

(2013) PLoS One 8: e81753-e81753

Released	2012-09-26
Method	X-RAY DIFFRACTION 2.553 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	ESAT-6-like protein 6 (protein) ESAT-6-like protein 7 (protein)
Unique Ligands	SO4

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4QKB	Download File View File

Crystal structure of seleno-methionine labelled human ALKBH7 in complex with alpha-ketoglutarate and Mn(II)

Wang, G., He, Q., Chen, Z.

(2014) J Biol Chem 289: 27924-27936

Released	2014-08-20
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial (protein)
Unique Ligands	AKG, MN

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5CET	Download File View File

Crystal structure of Rv2837c

Wang, F., He, Q., Zhu, D., Liu, S., Gu, L.

(2016) J Biol Chem 291: 3668-3681

Released	2015-12-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Bifunctional oligoribonuclease and PAP phosphatase NrnA (protein)
Unique Ligands	MN

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5JJU	Download File View File

Crystal structure of Rv2837c complexed with 5'-pApA and 5'-AMP

Wang, F., He, Q., Liu, S., Gu, L.

(2016) J Biol Chem 291: 14386-14387

Released	2016-05-04
Method	X-RAY DIFFRACTION 2.312 Å
Organisms	Mycobacterium tuberculosis H37Ra synthetic construct
Macromolecule	Uncharacterized protein Rv2837c (protein) RNA (5'-R(PAPA)-3') (nucleic acid)
Unique Ligands	AMP, MN

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5XHX	Download File View File

Crystal structure of VqsR LBD domain from Pseudomonas aeruginosa

Gu, L., He, Q., Wang, K., Wang, F.

To be published

Released	2017-05-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Helix-turn-helix transcriptional regulator (protein)

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6IUY	Download File View File

Structure of DsGPDH of Dunaliella salina

He, Q., Toh, J.D., Ero, R., Qiao, Z., Kumar, V., Gao, Y.G.

(2020) Plant J 102: 153-164

Released	2019-12-04
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Dunaliella salina
Macromolecule	Glycerol-3-phosphate dehydrogenase [NAD(+)] (protein)
Unique Ligands	13P, GOL, MG, NAD

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6PQO	Download File View File

Cryo-EM structure of the human TRPA1 ion channel in complex with the covalent agonist JT010

Suo, Y., Wang, Z., Zubcevic, L., Hsu, A.L., He, Q., Borgnia, M.J., Ji, R.-R., Lee, S.-Y.

(2020) Neuron 105: 882

Released	2020-01-08
Method	ELECTRON MICROSCOPY 2.88 Å
Organisms	Homo sapiens
Macromolecule	Transient receptor potential cation channel subfamily A member 1 (protein)
Unique Ligands	6OU, JT0, LBN
Unique branched monosaccharides	NAG

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6PQP	Download File View File

Cryo-EM structure of the human TRPA1 ion channel in complex with the covalent agonist BITC

Suo, Y., Wang, Z., Zubcevic, L., Hsu, A.L., He, Q., Borgnia, M.J., Ji, R.-R., Lee, S.-Y.

(2020) Neuron 105: 882

Released	2020-01-08
Method	ELECTRON MICROSCOPY 3.06 Å
Organisms	Homo sapiens
Macromolecule	Transient receptor potential cation channel subfamily A member 1 (protein)
Unique Ligands	6OU, 9BE, LBN
Unique branched monosaccharides	NAG

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6PQQ	Download File View File

Cryo-EM structure of human TRPA1 C621S mutant in the apo state

Suo, Y., Wang, Z., Zubcevic, L., Hsu, A.L., He, Q., Borgnia, M.J., Ji, R.-R., Lee, S.-Y.

(2020) Neuron 105: 882

Released	2020-01-08
Method	ELECTRON MICROSCOPY 2.81 Å
Organisms	Homo sapiens
Macromolecule	Transient receptor potential cation channel subfamily A member 1 (protein)
Unique Ligands	6OU, LBN

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7F00	Download File View File

Crystal structure of SPD_0310

Cao, K., Zhang, T., Li, N., Yang, X., Ding, J., He, Q., Sun, X.

(2022) mSystems 7: e0022122-e0022122

Released	2022-04-27
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Streptococcus pneumoniae
Macromolecule	UPF0371 protein SPRM200_0309 (protein)
Unique Ligands	SO4

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8D0B	Download File View File

Human CST-DNA polymerase alpha/primase preinitiation complex bound to 4xTEL-foldback template

He, Q., Lin, X., Chavez, B.L., Agrawal, S., Lusk, B.L., Lim, C.

(2022) Nature 608: 826-832

Released	2022-06-22
Method	ELECTRON MICROSCOPY 3.43 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 7 Unique nucleic acid chains: 1

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8D0K	Download File View File

Human CST-DNA polymerase alpha/primase preinitiation complex bound to 4xTEL-foldback template - PRIM2C advanced PIC

He, Q., Lin, X., Chavez, B.L., Agrawal, S., Lusk, B.L., Lim, C.

(2022) Nature 608: 826-832

Released	2022-06-22
Method	ELECTRON MICROSCOPY 4.27 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 7 Unique nucleic acid chains: 1

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8D4X	Download File View File

Structure of the human UBR5 HECT-type E3 ubiquitin ligase in a dimeric form

Wang, F., He, Q., Lin, G., Li, H.

(2023) Structure 31: 541-552.e4

Released	2023-04-19
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase UBR5 (protein)
Unique Ligands	ZN

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8D96	Download File View File

Human DNA polymerase alpha/primase elongation complex I bound to primer/template

He, Q., Baranovskiy, A., Lim, C., Tahirov, T.

(2023) Nat Struct Mol Biol 30: 579-583

Released	2023-04-19
Method	ELECTRON MICROSCOPY 3.35 Å
Organisms	Homo sapiens
Macromolecule	DNA polymerase alpha catalytic subunit (protein) DNA primase large subunit (protein) DNA (5'-D(APTPAPAPTPGPGPTPCPGPTPGPCPCPGPCPCPAPAPTPAPA)-3') (nucleic acid) DNA/RNA (5'-GTP)-R(PGPCPGPGPCPAPCPG)-D(PAPCP*C)-3') (hybrid)
Unique Ligands	DTP, MG, SF4

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8D9D	Download File View File

Human DNA polymerase-alpha/primase elongation complex II bound to primer/template

He, Q., Baranovskiy, A., Lim, C., Tahirov, T.

(2023) Nat Struct Mol Biol 30: 579-583

Released	2023-04-19
Method	ELECTRON MICROSCOPY 3.59 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 1 Unique nucleic acid hybrid chains: 1
Unique Ligands	DTP, MG, SF4, ZN

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8E0Q	Download File View File

Structure of the human UBR5 HECT-type E3 ubiquitin ligase in a C2 symmetric dimeric form

Wang, F., He, Q., Lin, G., Li, H.

(2023) Structure 31: 541-552.e4

Released	2023-04-19
Method	ELECTRON MICROSCOPY 2.66 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase UBR5 (protein)
Unique Ligands	ZN

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8EWI	Download File View File

Structure of the human UBR5 HECT-type E3 ubiquitin ligase in a tetrameric form

Wang, F., He, Q., Lin, G., Li, H.

(2023) Structure 31: 541-552.e4

Released	2023-04-19
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase UBR5 (protein)
Unique Ligands	ZN

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8G59	Download File View File

Cryo-EM structure of the TUG891 bound GPR120-Giq complex

Mao, C., Xiao, P., Tao, X., Qin, J., He, Q., Zhang, C., Yu, X., Zhang, Y., Sun, J.

(2023) Science 380: eadd6220-eadd6220

Released	2023-03-08
Method	ELECTRON MICROSCOPY 2.64 Å
Organisms	Homo sapiens
Macromolecule	Free fatty acid receptor 4 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(q) subunit alpha (protein) scFv16 (protein)
Unique Ligands	YN9

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8ID3	Download File View File

Cryo-EM structure of the 9-hydroxystearic acid bound GPR120-Gi complex

Mao, C., Xiao, P., Tao, X., Qin, J., He, Q., Zhang, C., Yu, X., Zhang, Y., Sun, J.

(2023) Science 380: eadd6220-eadd6220

Released	2023-03-15
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens
Macromolecule	Free fatty acid receptor 4 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(i) subunit alpha-1 (protein) scFv16 (protein)
Unique Ligands	7NR

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8ID4	Download File View File

Cryo-EM structure of the linoleic acid bound GPR120-Gi complex

Mao, C., Xiao, P., Tao, X., Qin, J., He, Q., Zhang, C., Yu, X., Zhang, Y., Sun, J.

(2023) Science 380: eadd6220-eadd6220

Released	2023-03-15
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens
Macromolecule	Free fatty acid receptor 4 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(i) subunit alpha-1 (protein) scFv16 (protein)
Unique Ligands	EIC

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8ID6	Download File View File

Cryo-EM structure of the oleic acid bound GPR120-Gi complex

Mao, C., Xiao, P., Tao, X., Qin, J., He, Q., Zhang, C., Yu, X., Zhang, Y., Sun, J.

(2023) Science 380: eadd6220-eadd6220

Released	2023-03-15
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Homo sapiens
Macromolecule	Free fatty acid receptor 4 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(i) subunit alpha-1 (protein) scFv16 (protein)
Unique Ligands	OLA

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8ID8	Download File View File

Cryo-EM structure of the TUG891 bound GPR120-Gi complex

Mao, C., Xiao, P., Tao, X., Qin, J., He, Q., Zhang, C., Yu, X., Zhang, Y., Sun, J.

(2023) Science 380: eadd6220-eadd6220

Released	2023-03-15
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens
Macromolecule	Free fatty acid receptor 4 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(i) subunit alpha-1 (protein) scFv16 (protein)
Unique Ligands	YN9

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8ID9	Download File View File

Cryo-EM structure of the eicosapentaenoic acid bound GPR120-Gi complex

Mao, C., Xiao, P., Tao, X., Qin, J., He, Q., Zhang, C., Yu, X., Zhang, Y., Sun, J.

(2023) Science 380: eadd6220-eadd6220

Released	2023-03-15
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens
Macromolecule	Free fatty acid receptor 4 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(i) subunit alpha-1 (protein) scFv16 (protein)
Unique Ligands	EPA

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8JR9	Download File View File

Small molecule agonist (PCO371) bound to human parathyroid hormone receptor type 1 (PTH1R)

Zhao, L., He, Q., Yuan, Q., Gu, Y., He, X., Shan, H., Li, J., Wang, K., Li, Y., Hu, W., Wu, K., Shen, J., Xu, H.E.

(2023) Nature 621: 635-641

Released	2023-08-02
Method	ELECTRON MICROSCOPY 2.57 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(s) subunit alpha-1 (protein) Nanobody 35 (protein) Parathyroid hormone/parathyroid hormone-related peptide receptor (protein)
Unique Ligands	KHF

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8T2I	Download File View File

Negative stain EM assembly of MYC, JAZ, and NINJA complex

Zhou, X.E., Zhang, Y., Zhou, Y., He, Q., Cao, X., Kariapper, L., Suino-Powell, K., Zhu, Y., Zhang, F., Karsten, M.

(2023) Plant Commun 4: 100639-100639

Released	2023-06-28
Method	ELECTRON MICROSCOPY 10.4 Å
Organisms	Arabidopsis thaliana Escherichia coli
Macromolecule	AFP homolog 2 (protein) Maltose/maltodextrin-binding periplasmic protein (protein) Protein TIFY 10A (protein) Transcription factor MYC3 (protein)