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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Terwisscha Van Scheltinga, A.C."

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Search Summary

This query matches 22 Structures.

Refinements

Structure Determination Methodology

experimental (22)

Scientific Name of Source Organism

	Homo sapiens (10)
	Escherichia coli (6)
	Escherichia coli K-12 (6)
	synthetic construct (4)
	Escherichia coli O69:H11 str. 08-4661 (2)
	Lama glama (2)
	Vibrio cholerae O1 biovar El Tor str. N16961 (2)
	Escherichia coli 55989 (1)
	Escherichia coli ETEC H10407 (1)
	Firmicutes bacterium AM43-11BH (1)

More...

Taxonomy

	Bacteria (12)
	Eukaryota (10)
	other sequences (4)

Experimental Method

	X-RAY DIFFRACTION (13)
	ELECTRON MICROSCOPY (8)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (22)
	DNA (9)
	RNA (1)

Refinement Resolution (Å)

	2.0 - 2.5 (6)
	2.5 - 3.0 (5)
	3.0 - 3.5 (7)
	4.0 - 4.5 (2)
	> 4.5 (1)

Release Date

	1990 - 1994 (2)
	2015 - 2019 (13)
	2020 - 2024 (7)

Enzyme Classification Name

Hydrolases (6)

Membrane Protein Annotation

	PDBTM (6)
	OPM (5)
	mpstruc (1)

Symmetry Type

	Asymmetric (10)
	Cyclic (13)
	Dihedral (1)

SCOP Classification

All beta proteins (2)

AllSelected

1 to 22 of 22 Structures

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1THR	Download File View File

STRUCTURES OF THROMBIN COMPLEXES WITH A DESIGNED AND A NATURAL EXOSITE INHIBITOR

Qiu, X., Yin, M., Padmanabhan, K.P., Krstenansky, J.L., Tulinsky, A.

(1993) J Biol Chem 268: 20318-20326

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Hirudinaria manillensis Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) HIRULLIN (protein)

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1THS	Download File View File

STRUCTURES OF THROMBIN COMPLEXES WITH A DESIGNED AND A NATURAL EXOSITE INHIBITOR

Qiu, X., Yin, M., Padmanabhan, K.P., Krstenansky, J.L., Tulinsky, A.

(1993) J Biol Chem 268: 20318-20326

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-THROMBIN (LARGE SUBUNIT) (protein) ALPHA-THROMBIN (SMALL SUBUNIT) (protein) SYNTHETIC INHIBITOR (protein)

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5DLJ	Download File View File

Crystal Structure of Cas-DNA-N1 complex

Wang, J., Li, J., Zhao, H., Sheng, G., Wang, M., Yin, M., Wang, Y.

(2015) Cell 163: 840-853

Released	2015-11-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli Escherichia coli K-12
Macromolecule	CRISPR-associated endonuclease Cas1 (protein) CRISPR-associated endoribonuclease Cas2 (protein) 39-mer DNA N1-F (nucleic acid) 39-mer DNA N1-R (nucleic acid)

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5DQT	Download File View File

Crystal Structure of Cas-DNA-22 complex

Wang, J., Li, J., Zhao, H., Sheng, G., Wang, M., Yin, M., Wang, Y.

(2015) Cell 163: 840-853

Released	2015-11-11
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Escherichia coli Escherichia coli K-12
Macromolecule	CRISPR-associated endonuclease Cas1 (protein) CRISPR-associated endoribonuclease Cas2 (protein) DNA (33-MER) (nucleic acid) DNA (34-MER) (nucleic acid)

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5DQU	Download File View File

Crystal Structure of Cas-DNA-10 complex

Wang, J., Li, J., Zhao, H., Sheng, G., Wang, M., Yin, M., Wang, Y.

(2015) Cell 163: 840-853

Released	2015-11-11
Method	X-RAY DIFFRACTION 4.5 Å
Organisms	Escherichia coli Escherichia coli K-12
Macromolecule	CRISPR-associated endonuclease Cas1 (protein) CRISPR-associated endoribonuclease Cas2 (protein) DNA (5'-D(GPAPGPTPCPGPAPTPGPCPTPTPTPTPT)-3') (nucleic acid) DNA (5'-D(PTPTPGPCPAPTPCPGPAPCPTP*C)-3') (nucleic acid)

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5DQZ	Download File View File

Crystal Structure of Cas-DNA-PAM complex

Wang, J., Li, J., Zhao, H., Sheng, G., Wang, M., Yin, M., Wang, Y.

(2015) Cell 163: 840-853

Released	2015-11-11
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli Escherichia coli K-12
Macromolecule	CRISPR-associated endonuclease Cas1 (protein) CRISPR-associated endoribonuclease Cas2 (protein) DNA (36-MER) (nucleic acid)
Unique Ligands	MG

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5WQ7	Download File View File

CryoEM structure of type II secretion system secretin GspD in E.coli K12

Yan, Z., Yin, M., Li, X.

(2017) Nat Struct Mol Biol 24: 177-183

Released	2016-12-28
Method	ELECTRON MICROSCOPY 3.04 Å
Organisms	Escherichia coli K-12
Macromolecule	Putative type II secretion system protein D (protein)

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5WQ8	Download File View File

CryoEM structure of type II secretion system secretin GspD in Vibrio cholerae

Yan, Z., Yin, M., Li, X.

(2017) Nat Struct Mol Biol 24: 177-183

Released	2016-12-28
Method	ELECTRON MICROSCOPY 3.26 Å
Organisms	Vibrio cholerae O1 biovar El Tor str. N16961
Macromolecule	Type II secretion system protein D (protein)

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5WQ9	Download File View File

CryoEM structure of type II secretion system secretin GspD G453A mutant in Vibrio cholerae

Yan, Z., Yin, M., Li, X.

(2017) Nat Struct Mol Biol 24: 177-183

Released	2016-12-28
Method	ELECTRON MICROSCOPY 4.22 Å
Organisms	Vibrio cholerae O1 biovar El Tor str. N16961
Macromolecule	Type II secretion system protein D (protein)

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5YEF	Download File View File

Crystal structure of CTCF ZFs2-8-Hs5-1aE

Yin, M., Wang, J., Wang, M., Li, X., Wang, Y.

(2017) Cell Res 27: 1365-1377

Released	2017-11-29
Method	X-RAY DIFFRACTION 2.807 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Transcriptional repressor CTCF (protein) DNA (27-MER) (nucleic acid)
Unique Ligands	ZN

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5YEG	Download File View File

Crystal structure of CTCF ZFs4-8-Hs5-1a complex

Yin, M., Wang, J., Wang, M., Li, X.

(2017) Cell Res 27: 1365-1377

Released	2017-11-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Transcriptional repressor CTCF (protein) DNA (5'-D(APCPTPTPTPAPAPCPCPAPGPCPAPGPAPGPGPGPCPG)-3') (nucleic acid) DNA (5'-D(TPCPGPCPCPCPTPCPTPGPCPTPGPGPTPTPAPAPAPG)-3') (nucleic acid)
Unique Ligands	ZN

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5YEH	Download File View File

Crystal structure of CTCF ZFs4-8-eCBS

Yin, M., Wang, J., Wang, M., Li, X., Wang, Y.

(2017) Cell Res 27: 1365-1377

Released	2017-11-29
Method	X-RAY DIFFRACTION 2.328 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Transcriptional repressor CTCF (protein) DNA (5'-D(APCPGPGPTPTPTPCPCPGPCPTPAPGPAPGPGPGPCPG)-3') (nucleic acid) DNA (5'-D(TPCPGPCPCPCPTPCPTPAPGPCPGPGPAPAPAPCPCPG)-3') (nucleic acid)
Unique Ligands	ZN

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5YEL	Download File View File

Crystal structure of CTCF ZFs6-11-gb7CSE

Yin, M., Wang, J., Wang, M., Li, X., Wang, Y.

(2017) Cell Res 27: 1365-1377

Released	2017-11-29
Method	X-RAY DIFFRACTION 2.96 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Transcriptional repressor CTCF (protein) DNA (26-MER) (nucleic acid)
Unique Ligands	ZN

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5ZDH	Download File View File

CryoEM structure of ETEC Pilotin-Secretin AspS-GspD complex

Yin, M., Yan, Z., Li, X.

(2018) Nat Microbiol 3: 581-587

Released	2018-04-18
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Escherichia coli ETEC H10407
Macromolecule	Type II secretion system lipoprotein (protein) Type II secretion system protein D (protein)

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6IXH	Download File View File

Type VI secretion system membrane core complex

Yin, M., Yan, Z.

(2019) Cell Res 29: 251-253

Released	2019-01-23
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Escherichia coli 55989
Macromolecule	Type VI Secretion System TssJ (protein) Type VI Secretion System TssM (protein)

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6L7A	Download File View File

CsgFG complex in Curli biogenesis system

Yan, Z.F., Yin, M., Chen, J.N., Li, X.M.

(2020) Nat Commun 11: 241-241

Released	2020-01-15
Method	ELECTRON MICROSCOPY 3.38 Å
Organisms	Escherichia coli Escherichia coli O69:H11 str. 08-4661
Macromolecule	CsgF (protein) Curli production assembly/transport protein CsgG (protein)

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6L7C	Download File View File

CsgFG complex with substrate CsgAN6 peptide in Curli biogenesis system

Yan, Z.F., Yin, M., Chen, J.N., Li, X.M.

(2020) Nat Commun 11: 241-241

Released	2020-01-15
Method	ELECTRON MICROSCOPY 3.34 Å
Organisms	Escherichia coli Escherichia coli K-12 Escherichia coli O69:H11 str. 08-4661
Macromolecule	CsgF (protein) Curli production assembly/transport protein CsgG (protein) Major curlin subunit CsgA (protein)

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8DTN	Download File View File

The complex of nanobody 6101 with BCL11A ZF6

Yin, M., Tenglin, K., Zhai, L., Dassama, L.M., Orkin, S.H.

(2023) Proc Natl Acad Sci U S A 120: e2218959120-e2218959120

Released	2023-02-01
Method	X-RAY DIFFRACTION 2.199 Å
Organisms	Homo sapiens Lama glama
Macromolecule	B-cell lymphoma/leukemia 11A (protein) Nanobody 6101 (protein)
Unique Ligands	MG, ZN

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8DTU	Download File View File

The complex of nanobody 5344N74D with BCL11A ZF6.

Yin, M., Tenglin, K., Zhai, L., Dassama, L.M., Orkin, S.H.

(2023) Proc Natl Acad Sci U S A 120: e2218959120-e2218959120

Released	2023-02-01
Method	X-RAY DIFFRACTION 2.447 Å
Organisms	Homo sapiens Lama glama
Macromolecule	B-cell lymphoma/leukemia 11A (protein) Nanobody 5344N74D (protein)
Unique Ligands	ZN

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8IAZ	Download File View File

Cryo-EM structure of the ISFba1 TnpB-reRNA-dsDNA complex

Yin, M., Zhou, F., Zhu, Y., Huang, Z.

(2024) Cell Res 34: 370-385

Released	2024-04-17
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Firmicutes bacterium AM43-11BH
Macromolecule	Transposase (protein) DNA (5'-D(PAPCPAPTPGPGPAPCPCPAPTPCPAPGPCPTPCPCPTPAPAPTPGPG)-3') (nucleic acid) DNA (5'-D(PCPCPAPTPTPAPGPGPAPGPCPTPGPAPTPG)-3') (nucleic acid) RNA (207-MER) (nucleic acid)
Unique Ligands	ZN

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8THO	Download File View File

Solution structure of the zinc finger repeat domain of BCL11A (ZnF456)

Viennet, T., Yin, M., Orkin, S.H., Arthanari, H.

(2024) Structure 32: 2276-2286.e4

Released	2024-07-24
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	B-cell lymphoma/leukemia 11A (protein)
Unique Ligands	ZN

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9B4P	Download File View File

Tetramer Formation of the BCL11A ZF0 Domain

Yin, M., Tenglin, K., Orkin, S.H.

(2024) Science 386: 1010-1018

Released	2024-12-18
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Homo sapiens
Macromolecule	B-cell lymphoma/leukemia 11A (protein)
Unique Ligands	ZN

1 to 22 of 22 Structures

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