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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Toy, L."

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Homo sapiens (11)
	Human immunodeficiency virus 1 (6)
	Mus musculus (6)
	Macaca mulatta (4)
	synthetic construct (4)
	Deer tick virus (1)
	Human immunodeficiency virus (1)
	Lassa virus Josiah (1)
	Oryctolagus cuniculus (1)
	Simiiformes sp. (1)

More...

Taxonomy

	Eukaryota (18)
	Riboviria (9)
	other sequences (4)
	Bacteria (1)

Experimental Method

	ELECTRON MICROSCOPY (11)
	X-RAY DIFFRACTION (7)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (1)
	2.5 - 3.0 (5)
	3.0 - 3.5 (6)
	4.0 - 4.5 (4)
	> 4.5 (1)

Release Date

2020 - 2024 (18)

Symmetry Type

	Asymmetric (16)
	Cyclic (2)

SCOP Classification

All beta proteins (1)

AllSelected

1 to 18 of 18 Structures

Page 1 of 1

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7KYL	Download File View File

Powassan virus Envelope protein DIII in complex with neutralizing Fab POWV-80

Errico, J.M., Nelson, C.A., Fremont, D.H., Center for Structural Genomics of Infectious Diseases (CSGID)

(2021) J Exp Med 218:

Released	2021-04-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Deer tick virus Mus musculus
Macromolecule	Envelope protein domain III (protein) POWV-80 Fab heavy chain (protein) POWV-80 Fab light chain (protein)
Unique Ligands	CL, NA

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7T73	Download File View File

HIV-1 Envelope ApexGT2.2MUT in complex with PCT64.LMCA Fab

Berndsen, Z.T., Ward, A.B.

(2022) Immunity 55: 2149

Released	2022-09-28
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	HIV Envelope ApexGT2.2MUT gp120 (protein) HIV Envelope ApexGT2.2MUT gp41 (protein) PCT64.LMCA Fab Heavy Chain (protein) PCT64.LMCA Fab Light Chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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7T74	Download File View File

HIV-1 Envelope ApexGT2 in complex with PCT64.35S Fab and RM20A3 Fab

Berndsen, Z.T., Ward, A.B.

(2022) Immunity 55: 2149

Released	2022-09-28
Method	ELECTRON MICROSCOPY 3.35 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Macaca mulatta
Macromolecule	Unique protein chains: 6
Unique Ligands	NAG
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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7T75	Download File View File

HIV-1 Envelope ApexGT2 in complex with RM20A3 Fab

Berndsen, Z.T., Ward, A.B.

(2022) Immunity 55: 2149

Released	2022-09-28
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	HIV Envelope ApexGT2 gp120 (protein) HIV Envelope ApexGT2 gp41 (protein) RM20A3 Fab Heavy Chain (protein) RM20A3 Fab Light Chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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7T76	Download File View File

HIV-1 Envelope ApexGT3 in complex with PG9.iGL Fab

Berndsen, Z.T., Ward, A.B.

(2022) Immunity 55: 2149

Released	2022-09-28
Method	ELECTRON MICROSCOPY 4.43 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	HIV Envelope ApexGT3 gp120 (protein) HIV Envelope ApexGT3 gp41 (protein) PG9.iGL Fab Heavy Chain (protein) PG9.iGL Fab Light Chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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7T77	Download File View File

HIV-1 Envelope ApexGT3.N130 in complex with PG9 Fab

Berndsen, Z.T., Ward, A.B.

(2022) Immunity 55: 2149

Released	2022-09-28
Method	ELECTRON MICROSCOPY 4.75 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	HIV Envelope ApexGT3.N130 gp120 (protein) HIV Envelope ApexGT3.N130 gp41 (protein) PG9 Fab Heavy Chain (protein) PG9 Fab Light Chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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7TI6	Download File View File

Crystal structure of the wild-type least mutated common ancestor (LMCA) of the HIV-targeting PCT64 antibody lineage

Omorodion, O., Wilson, I.A.

(2022) Immunity 55: 2149-2167.e9

Released	2022-10-05
Method	X-RAY DIFFRACTION 2.64 Å
Organisms	Homo sapiens
Macromolecule	PCT64_LMCA Fab heavy chain (protein) PCT64_LMCA light chain (wild type) (protein)
Unique Ligands	EPE

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8F92	Download File View File

HIV Env BG505_MD39_B11 SOSIP boosting trimer in complex with B11_d77.7 mouse Fab and RM20A3 Fab

Torres, J.L., Ozorowski, G., Ward, A.B.

(2024) Science 384: eadk0582-eadk0582

Released	2024-05-15
Method	ELECTRON MICROSCOPY 3.14 Å
Organisms	Human immunodeficiency virus Macaca mulatta Mus musculus
Macromolecule	Unique protein chains: 6
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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8F9G	Download File View File

HIV Env germline targeting BG505_MD64_N332-GT5 SOSIP in complex with V3-glycan polyclonal Fab isolated from immunized BG18HCgl knock-in mice

Ozorowski, G., Torres, J.L., Ward, A.B.

(2024) Science 384: eadk0582-eadk0582

Released	2024-05-15
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Mus musculus synthetic construct
Macromolecule	BG505_MD64_N332-GT5 gp120 (protein) BG505_MD64_N332-GT5 gp41 (protein) V3-glycan epitope polyclonal Fab heavy chain (protein) V3-glycan epitope polyclonal Fab light chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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8F9M	Download File View File

HIV Env germline targeting BG505_MD64_N332-GT5 SOSIP in complex with V3-glycan polyclonal Fab isolated from immunized wild type mice, and NHP monoclonal Fab RM20A3

Ozorowski, G., Ward, A.B.

(2024) Science 384: eadk0582-eadk0582

Released	2024-05-15
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Macaca mulatta Mus musculus synthetic construct
Macromolecule	Unique protein chains: 6
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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8SX3	Download File View File

10E8-GT10.2 immunogen in complex with human Fab 10E8 and mouse Fab W6-10

Huang, J., Ozorowski, G., Ward, A.B.

(2024) Nat Immunol 25: 1073-1082

Released	2024-05-22
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	10E8 Fab heavy chain (protein) 10E8 light chain (protein) 10E8-GT10.2 immunogen (protein) W6-10 mouse Fab heavy chain (protein) W6-10 mouse light chain (protein)
Unique branched monosaccharides	NAG

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8TYC	Download File View File

Lassa GPC (strain Josiah) bound to rabbit polyclonal base-targeting antibody Base-1

Perrett, H.R., Brouwer, P.J.M., Ward, A.B.

To be published

Released	2024-09-11
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Lassa virus Josiah Oryctolagus cuniculus Thermotoga maritima MSB8
Macromolecule	Glycoprotein G1 (protein) Glycoprotein G2, 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase fusion protein (protein) Polyclonal antibody Base-1 heavy chain (protein) Polyclonal antibody Base-1 light chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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8TZN	Download File View File

Crystal structure of 10E8-GT10.2 HIV-1 MPER scaffold in complex with a non-human primate W3-01 Fab

Lee, C.C.D., Wilson, I.A.

(2024) Nat Immunol 25: 1073-1082

Released	2024-06-12
Method	X-RAY DIFFRACTION 3.11 Å
Organisms	Simiiformes sp.
Macromolecule	10E8-GT10.2 MPER scaffold (protein) W3-01 Fab Heavy Chain (protein) W3-01 Fab Light Chain (protein)

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8TZW	Download File View File

Crystal structure of 10E8-GT4 scaffold in complex with a human 10E8 inferred germline (10E8-iGL1)

Irimia, A., Wilson, I.A.

(2024) Nat Immunol 25: 1073-1082

Released	2024-06-12
Method	X-RAY DIFFRACTION 2.66 Å
Organisms	Homo sapiens
Macromolecule	10E8-GT4 epitope scaffold (protein) 10E8-IGL1 Fab Light Chain (protein) 10E8-IGL1 Fab heavy chain (protein)

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8U03	Download File View File

Crystal structure of non-glycosylated 10E8-GT10.1 scaffold in complex with a human 10E8 NGS precursor (10E8-NGS-03)

Irimia, A., Wilson, I.A.

(2024) Nat Immunol 25: 1073-1082

Released	2024-06-12
Method	X-RAY DIFFRACTION 2.72 Å
Organisms	Homo sapiens
Macromolecule	10E8-GT10.1 epitope scaffold (protein) 10E8-NGS-03 Fab Light Chain (protein) 10E8-NGS-03 Fab heavy chain (protein)
Unique Ligands	1PE, IMD

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8U08	Download File View File

Crystal structure of 10E8-GT11 scaffold in complex with a human 10E8 inferred germline (10E8-iGL1)

Irimia, A., Wilson, I.A.

(2024) Nat Immunol 25: 1073-1082

Released	2024-06-12
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Homo sapiens
Macromolecule	10E8-GT11 epitope scaffold (protein) 10E8-IGL1 heavy chain (protein) 10E8-IGL1 light chain (protein)
Unique Ligands	GOL

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8V2E	Download File View File

Crystal structure of B055 scaffold boost immunogen in complex with a mature 10E8 Fab

Cho, S.Y., Wilson, I.A.

(2024) Nat Immunol 25: 1073-1082

Released	2024-06-12
Method	X-RAY DIFFRACTION 2.62 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	10E8 EPITOPE SCAFFOLD B055 (protein) Antibody 10E8 FAB HEAVY CHAIN (protein) Antibody 10E8 FAB LIGHT CHAIN (protein)
Unique Ligands	NAG

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8VFV	Download File View File

HIV Env BG505_MD39_B16 SOSIP boosting trimer in complex with B16_d77.5 mouse Fab and RM20A3 Fab

Ozorowski, G., Torres, J.L., Ward, A.B.

(2024) Science 384: eadk0582-eadk0582

Released	2024-05-15
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Human immunodeficiency virus 1 Macaca mulatta Mus musculus
Macromolecule	Unique protein chains: 6
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

1 to 18 of 18 Structures

Page 1 of 1

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