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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "van Vlissingen, M.F."

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (5)
	synthetic construct (5)
	Homo sapiens (2)
	Cytaeis uchidae (1)
	Human immunodeficiency virus 1 (1)

Taxonomy

	Riboviria (6)
	other sequences (5)
	Eukaryota (3)

Experimental Method

X-RAY DIFFRACTION (9)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (1)
	2.0 - 2.5 (3)
	2.5 - 3.0 (3)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (2)
	2020 - 2024 (6)

Enzyme Classification Name

	Oxidoreductases (2)
	Hydrolases (1)

Symmetry Type

	Asymmetric (6)
	Cyclic (3)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (2)
	All beta proteins (1)
	Artifacts (1)

AllSelected

1 to 9 of 9 Structures

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1MUI	Download File View File

Crystal structure of HIV-1 protease complexed with Lopinavir.

Stoll, V., Qin, W., Stewart, K.D., Jakob, C., Park, C., Walter, K., Simmer, R.L., Helfrich, R., Bussiere, D., Kao, J., Kempf, D., Sham, H.L., Norbeck, D.W.

(2002) Bioorg Med Chem 10: 2803-2806

Released	2002-10-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	protease (protein)
Unique Ligands	AB1

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2ILT	Download File View File

Human 11-beta-Hydroxysteroid Dehydrogenase (HSD1) with NADP and Adamantane Sulfone Inhibitor

Longenecker, K.L., Sorensen, B., Judge, R., Qin, W., Link, J.T.

(2007) Bioorg Med Chem Lett 17: 527-532

Released	2007-04-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Corticosteroid 11-beta-dehydrogenase isozyme 1 (protein)
Unique Ligands	NAP, NI, NN1

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2IRW	Download File View File

Human 11-beta-Hydroxysteroid Dehydrogenase (HSD1) with NADP and Adamantane Ether Inhibitor

Longenecker, K.L., Patel, J.R., Russell, J., Qin, W.

(2007) Bioorg Med Chem Lett 17: 750-755

Released	2007-01-23
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Corticosteroid 11-beta-dehydrogenase isozyme 1 (protein)
Unique Ligands	NAP, NN4

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7C8V	Download File View File

Structure of sybody SR4 in complex with the SARS-CoV-2 S Receptor Binding domain (RBD)

Li, T., Yao, H., Cai, H., Qin, W., Li, D.

(2021) Nat Commun 12: 4635-4635

Released	2020-06-24
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	Spike protein S1 (protein) Synthetic nanobody SR4 (protein)
Unique Ligands	GOL, NAG

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7C8W	Download File View File

Structure of sybody MR17 in complex with the SARS-CoV-2 S receptor-binding domain (RBD)

Li, T., Cai, H., Yao, H., Qin, W., Li, D.

(2021) Nat Commun 12: 4635-4635

Released	2020-06-24
Method	X-RAY DIFFRACTION 2.77 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	Spike protein S1 (protein) Synthetic nanobody MR17 (protein)
Unique Ligands	GOL
Unique branched monosaccharides	FUC, NAG

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7CAN	Download File View File

Structure of sybody MR17-K99Y in complex with the SARS-CoV-2 S Receptor-binding domain (RBD)

Li, T., Yao, H., Cai, H., Qin, W., Li, D.

(2021) Nat Commun 12: 4635-4635

Released	2020-06-24
Method	X-RAY DIFFRACTION 2.94 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	Spike protein S1 (protein) sybody MR17-K99Y (protein)
Unique Ligands	GOL
Unique branched monosaccharides	FUC, NAG

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7D2Z	Download File View File

Structure of sybody SR31 in complex with the SARS-CoV-2 S Receptor Binding domain (RBD)

Li, T., Cai, H., Yao, H., Qin, W., Li, D.

(2021) PLoS Pathog 17: e1009328-e1009328

Released	2021-02-17
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	SR31 against SARS-CoV-2 RBD, non neutralizing (protein) Spike protein S1 (protein)
Unique Ligands	ACT, FMT, GOL
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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7D30	Download File View File

Structure of sybody MR17-SR31 fusion in complex with the SARS-CoV-2 S Receptor Binding domain (RBD)

Li, T., Yao, H., Cai, H., Qin, W., Li, D.

(2021) PLoS Pathog 17: e1009328-e1009328

Released	2021-02-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	Spike protein S1 (protein) sybody fusion of MR17-SR31 with a GS linker (protein)
Unique Ligands	1PE, ACT, BU2, CD, GOL
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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8Q79	Download File View File

Structure of mBaoJin at pH 6.5

Samygina, V.R., Subach, O.M., Vlaskina, A.V., Nikolaeva, A.Y., Borshchevsky, V., Qin, W., Subach, F.V.

(2024) Nat Methods 21: 657-665

Released	2023-12-27
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Cytaeis uchidae
Macromolecule	mBaoJin (protein)
Unique Ligands	CL

1 to 9 of 9 Structures

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