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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: BIRD Class = "Nutrient"

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Search Summary

This query matches 54 Structures.

Refinements

Structure Determination Methodology

experimental (54)

Scientific Name of Source Organism

	Mycobacterium tuberculosis H37Rv (10)
	Escherichia coli (9)
	Haemophilus influenzae (7)
	Enterococcus faecium (5)
	Mycobacterium tuberculosis variant bovis (5)
	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (4)
	Homo sapiens (3)
	Salmonella enterica subsp. enterica serovar Enteritidis (3)
	Bacillus thermoproteolyticus (2)
	Pseudomonas aeruginosa (2)

More...

Taxonomy

	Bacteria (50)
	Eukaryota (3)
	Duplodnaviria (1)

Experimental Method

X-RAY DIFFRACTION (54)

Polymer Entity Type

	Protein (54)
	DNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (16)
	2.0 - 2.5 (20)
	2.5 - 3.0 (13)
	3.0 - 3.5 (4)
	3.5 - 4.0 (1)

Release Date

	1990 - 1994 (2)
	1995 - 1999 (6)
	2000 - 2004 (26)
	2005 - 2009 (20)

Enzyme Classification Name

	Transferases (43)
	Hydrolases (3)

Symmetry Type

	Cyclic (38)
	Asymmetric (12)
	Dihedral (5)

SCOP Classification

	All beta proteins (28)
	Alpha and beta proteins (a+b) (20)
	Alpha and beta proteins (a/b) (8)
	All alpha proteins (1)
	Artifacts (4)

AllSelected

1 to 25 of 54 Structures

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1HV9 \| pdb_00001hv9	Download File View File

STRUCTURE OF E. COLI GLMU: ANALYSIS OF PYROPHOSPHORYLASE AND ACETYLTRANSFERASE ACTIVE SITES

Olsen, L.R., Roderick, S.L.

(2001) Biochemistry 40: 1913-1921

Released	2001-02-21
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	UDP-N-ACETYLGLUCOSAMINE PYROPHOSPHORYLASE (protein)
Unique Ligands	CO, COA, UD1

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1KGQ \| pdb_00001kgq	Download File View File

Crystal Structure of Tetrahydrodipicolinate N-Succinyltransferase in Complex with L-2-aminopimelate and Succinamide-CoA

Beaman, T.W., Vogel, K.W., Drueckhammer, D.G., Blanchard, J.S., Roderick, S.L.

(2002) Protein Sci 11: 974-979

Released	2002-04-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis variant bovis
Macromolecule	2,3,4,5-TETRAHYDROPYRIDINE-2-CARBOXYLATE N-SUCCINYLTRANSFERASE (protein)
Unique Ligands	NPI, SCO

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1KGT \| pdb_00001kgt	Download File View File

Crystal Structure of Tetrahydrodipicolinate N-Succinyltransferase in Complex with Pimelate and Succinyl-CoA

Beaman, T.W., Vogel, K.W., Drueckhammer, D.G., Blanchard, J.S., Roderick, S.L.

(2002) Protein Sci 11: 974-979

Released	2002-04-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mycobacterium tuberculosis variant bovis
Macromolecule	2,3,4,5-TETRAHYDROPYRIDINE-2-CARBOXYLATE N-SUCCINYLTRANSFERASE (protein)
Unique Ligands	PML, SCA

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1KHR \| pdb_00001khr	Download File View File

Crystal Structure of Vat(D) in Complex with Virginiamycin and Coenzyme A

Sugantino, M., Roderick, S.L.

(2002) Biochemistry 41: 2209-2216

Released	2002-02-20
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Enterococcus faecium
Macromolecule	STREPTOGRAMIN A ACETYLTRANSFERASE (protein)
Unique Ligands	COA, VIR

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1KK4 \| pdb_00001kk4	Download File View File

Crystal Structure of Vat(D) in Complex with Acetyl-CoA

Sugantino, M., Roderick, S.L.

(2002) Biochemistry 41: 2209-2216

Released	2002-02-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Enterococcus faecium
Macromolecule	STREPTOGRAMIN A ACETYLTRANSFERASE (protein)
Unique Ligands	ACO

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1KK5 \| pdb_00001kk5	Download File View File

Crystal Structure of Vat(D) (Form II)

Sugantino, M., Roderick, S.L.

(2002) Biochemistry 41: 2209-2216

Released	2002-02-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Enterococcus faecium
Macromolecule	STREPTOGRAMIN A ACETYLTRANSFERASE (protein)

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1KK6 \| pdb_00001kk6	Download File View File

Crystal Structure of Vat(D) (Form I)

Sugantino, M., Roderick, S.L.

(2002) Biochemistry 41: 2209-2216

Released	2002-02-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Enterococcus faecium
Macromolecule	STREPTOGRAMIN A ACETYLTRANSFERASE (protein)

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1KQA \| pdb_00001kqa	Download File View File

GALACTOSIDE ACETYLTRANSFERASE IN COMPLEX WITH COENZYME A

Wang, X.-G., Olsen, L.R., Roderick, S.L.

(2002) Structure 10: 581-588

Released	2002-04-10
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli
Macromolecule	GALACTOSIDE O-ACETYLTRANSFERASE (protein)
Unique Ligands	COA

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1KRR \| pdb_00001krr	Download File View File

Galactoside Acetyltransferase in Complex with Acetyl-Coenzyme A

Wang, X.-G., Olsen, L.R., Roderick, S.L.

(2002) Structure 10: 581-588

Released	2002-04-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	GALACTOSIDE O-ACETYLTRANSFERASE (protein)
Unique Ligands	ACO

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1KRU \| pdb_00001kru	Download File View File

Galactoside Acetyltransferase in Complex with IPTG and Coenzyme A

Wang, X.-G., Olsen, L.R., Roderick, S.L.

(2002) Structure 10: 581-588

Released	2002-04-10
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	GALACTOSIDE O-ACETYLTRANSFERASE (protein)
Unique Ligands	COA, IPT

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1KRV \| pdb_00001krv	Download File View File

Galactoside Acetyltransferase in Complex with CoA and PNP-beta-Gal

Wang, X.-G., Olsen, L.R., Roderick, S.L.

(2002) Structure 10: 581-588

Released	2002-04-10
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	GALACTOSIDE O-ACETYLTRANSFERASE (protein)
Unique Ligands	147, COA

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1LN1 \| pdb_00001ln1	Download File View File

Crystal Structure of Human Phosphatidylcholine Transfer Protein in Complex with Dilinoleoylphosphatidylcholine

Roderick, S.L., Chan, W.W., Agate, D.S., Olsen, L.R., Vetting, M.W., Rajashankar, K.R., Cohen, D.E.

(2002) Nat Struct Biol 9: 507-511

Released	2002-06-26
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylcholine transfer protein (protein)
Unique Ligands	DLP

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1LN2 \| pdb_00001ln2	Download File View File

Crystal Structure of Human Phosphatidylcholine Transfer Protein in Complex with Dilinoleoylphosphatidylcholine (Seleno-Met Protein)

Roderick, S.L., Chan, W.W., Agate, D.S., Olsen, L.R., Vetting, M.W., Rajashankar, K.R., Cohen, D.E.

(2002) Nat Struct Biol 9: 507-511

Released	2002-06-26
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylcholine transfer protein (protein)
Unique Ligands	DLP

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1LN3 \| pdb_00001ln3	Download File View File

Structure of Human Phosphatidylcholine Transfer Protein in Complex with Palmitoyl-Linoleoyl Phosphatidylcholine (Seleno-Met Protein)

Roderick, S.L., Chan, W.W., Agate, D.S., Olsen, L.R., Vetting, M.W., Rajashankar, K.R., Cohen, D.E.

(2002) Nat Struct Biol 9: 507-511

Released	2002-06-26
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylcholine transfer protein (protein)
Unique Ligands	CPL

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1LXA \| pdb_00001lxa	Download File View File

UDP N-ACETYLGLUCOSAMINE ACYLTRANSFERASE

Roderick, S.L.

(1995) Science 270: 997-1000

Released	1995-12-07
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli K-12
Macromolecule	UDP N-ACETYLGLUCOSAMINE O-ACYLTRANSFERASE (protein)

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1M44 \| pdb_00001m44	Download File View File

Aminoglycoside 2'-N-acetyltransferase from Mycobacterium tuberculosis-APO Structure

Vetting, M.W., Hegde, S.S., Javid-Majd, F., Blanchard, J.S., Roderick, S.L.

(2002) Nat Struct Biol 9: 653-658

Released	2002-08-28
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Aminoglycoside 2'-N-acetyltransferase (protein)
Unique Ligands	SO4

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1M4D \| pdb_00001m4d	Download File View File

Aminoglycoside 2'-N-acetyltransferase from Mycobacterium tuberculosis-Complex with Coenzyme A and Tobramycin

Vetting, M.W., Hegde, S.S., Javid-Majd, F., Blanchard, J.S., Roderick, S.L.

(2002) Nat Struct Biol 9: 653-658

Released	2002-08-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Aminoglycoside 2'-N-acetyltransferase (protein)
Unique Ligands	COA, PAP, TOY

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1M4G \| pdb_00001m4g	Download File View File

Aminoglycoside 2'-N-acetyltransferase from Mycobacterium tuberculosis-Complex with Coenzyme A and Ribostamycin

Vetting, M.W., Hegde, S.S., Javid-Majd, F., Blanchard, J.S., Roderick, S.L.

(2002) Nat Struct Biol 9: 653-658

Released	2002-08-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Aminoglycoside 2'-N-acetyltransferase (protein)
Unique Ligands	COA, PAP, RIO

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1M4I \| pdb_00001m4i	Download File View File

Aminoglycoside 2'-N-acetyltransferase from Mycobacterium tuberculosis-Complex with Coenzyme A and Kanamycin A

Vetting, M.W., Hegde, S.S., Javid-Majd, F., Blanchard, J.S., Roderick, S.L.

(2002) Nat Struct Biol 9: 653-658

Released	2002-08-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Aminoglycoside 2'-N-acetyltransferase (protein)
Unique Ligands	COA, KAN, PAP

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1MAT \| pdb_00001mat	Download File View File

STRUCTURE OF THE COBALT-DEPENDENT METHIONINE AMINOPEPTIDASE FROM ESCHERICHIA COLI: A NEW TYPE OF PROTEOLYTIC ENZYME

Roderick, S.L., Matthews, B.W.

(1993) Biochemistry 32: 3907-3912

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	METHIONYL AMINOPEPTIDASE (protein)
Unique Ligands	CO

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1OZP \| pdb_00001ozp	Download File View File

Crystal Structure of Rv0819 from Mycobacterium tuberculosis MshD-Mycothiol Synthase Acetyl-Coenzyme A Complex.

Vetting, M.W., Roderick, S.L., Yu, M., Blanchard, J.S.

(2003) Protein Sci 12: 1954-1959

Released	2003-09-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	hypothetical protein Rv0819 (protein)
Unique Ligands	ACO

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1P0H \| pdb_00001p0h	Download File View File

Crystal Structure of Rv0819 from Mycobacterium Tuberculosis MshD-Mycothiol Synthase Coenzyme A Complex

Vetting, M.W., Roderick, S.L., Yu, M., Blanchard, J.S.

(2003) Protein Sci 12: 1954-1959

Released	2003-09-09
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	hypothetical protein Rv0819 (protein)
Unique Ligands	ACO, COA

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1S3Z \| pdb_00001s3z	Download File View File

Aminoglycoside N-Acetyltransferase AAC(6')-Iy in Complex with CoA and Ribostamycin

Vetting, M.W., Magnet, S., Nieves, E., Roderick, S.L., Blachard, J.S.

(2004) Chem Biol 11: 565-573

Released	2004-05-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Salmonella enterica subsp. enterica serovar Enteritidis
Macromolecule	aminoglycoside 6'-N-acetyltransferase (protein)
Unique Ligands	COA, NI, RIO, SO4

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1S5K \| pdb_00001s5k	Download File View File

Aminoglycoside N-Acetyltransferase AAC(6')-Iy in Complex with CoA and N-terminal His(6)-tag (crystal form 1)

Vetting, M.W., Magnet, S., Nieves, E., Roderick, S.L., Blanchard, J.S.

(2004) Chem Biol 11: 565-573

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Salmonella enterica subsp. enterica serovar Enteritidis
Macromolecule	aminoglycoside 6'-N-acetyltransferase (protein)
Unique Ligands	COA, SO4

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1S60 \| pdb_00001s60	Download File View File

Aminoglycoside N-Acetyltransferase AAC(6')-Iy in Complex with CoA and N-terminal His(6)-tag (crystal form 2)

Vetting, M.W., Magnet, S., Nieves, E., Roderick, S.L., Blanchard, J.S.

(2004) Chem Biol 11: 565-573

Released	2004-05-18
Method	X-RAY DIFFRACTION 3 Å
Organisms	Salmonella enterica subsp. enterica serovar Enteritidis
Macromolecule	aminoglycoside 6'-N-acetyltransferase (protein)
Unique Ligands	COA, SO4

1 to 25 of 54 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1HV9 | pdb_00001hv9

1KGQ | pdb_00001kgq

1KGT | pdb_00001kgt

1KHR | pdb_00001khr

1KK4 | pdb_00001kk4

1KK5 | pdb_00001kk5

1KK6 | pdb_00001kk6

1KQA | pdb_00001kqa

1KRR | pdb_00001krr

1KRU | pdb_00001kru

1KRV | pdb_00001krv

1LN1 | pdb_00001ln1

1LN2 | pdb_00001ln2

1LN3 | pdb_00001ln3

1LXA | pdb_00001lxa

1M44 | pdb_00001m44

1M4D | pdb_00001m4d

1M4G | pdb_00001m4g

1M4I | pdb_00001m4i

1MAT | pdb_00001mat

1OZP | pdb_00001ozp

1P0H | pdb_00001p0h

1S3Z | pdb_00001s3z

1S5K | pdb_00001s5k

1S60 | pdb_00001s60