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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = 6PL

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Search Summary

This query matches 39 Structures.

Refinements

Structure Determination Methodology

experimental (39)

Scientific Name of Source Organism

	Homo sapiens (12)
	Rhodococcus opacus (10)
	Saccharomyces cerevisiae S288C (7)
	Drosophila melanogaster (3)
	Rhodopseudomonas palustris CGA009 (2)
	Saccharomyces cerevisiae (2)
	Oryctolagus cuniculus (1)
	Spinacia oleracea (1)
	Synechocystis (1)
	Synechocystis sp. PCC 6803 (1)

Taxonomy

	Eukaryota (26)
	Bacteria (13)

Experimental Method

	ELECTRON MICROSCOPY (25)
	X-RAY DIFFRACTION (14)

Polymer Entity Type

Protein (39)

Refinement Resolution (Å)

	1.5 - 2.0 (7)
	2.0 - 2.5 (8)
	2.5 - 3.0 (10)
	3.0 - 3.5 (8)
	3.5 - 4.0 (4)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (10)
	2015 - 2019 (2)
	2020 - 2024 (14)
	2025 - 2029 (10)

Enzyme Classification Name

	Oxidoreductases (10)
	Lyases (7)
	Transferases (6)
	Hydrolases (5)
	Translocases (4)

Membrane Protein Annotation

	PDBTM (17)
	OPM (9)
	mpstruc (9)
	MemProtMD (9)

Symmetry Type

	Cyclic (23)
	Asymmetric (16)

SCOP Classification

	Membrane and cell surface proteins and peptides (2)
	All beta proteins (13)
	All alpha proteins (2)
	Alpha and beta proteins (a/b) (2)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 39 Structures

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2H26 \| pdb_00002h26	Download File View File

human CD1b in complex with endogenous phosphatidylcholine and spacer

Garcia-Alles, L.F., Maveyraud, L., Vallina, A.T., Guillet, V., Mourey, L.

(2006) EMBO J 25: 3684-3692

Released	2006-07-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) T-cell surface glycoprotein CD1b (protein)
Unique Ligands	6PL, 6UL, GOL, SO4
Unique branched monosaccharides	FUC, NAG

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3B7Q \| pdb_00003b7q	Download File View File

Crystal Structure of Yeast Sec14 Homolog Sfh1 in Complex with Phosphatidylcholine

Ortlund, E.A., Schaaf, G., Redinbo, M.R., Bankaitis, V.

(2008) Mol Cell 29: 191-206

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Uncharacterized protein YKL091C (protein)
Unique Ligands	6PL, GOL, PO4

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3B7Z \| pdb_00003b7z	Download File View File

Crystal Structure of Yeast Sec14 Homolog Sfh1 in Complex with Phosphatidylcholine or Phosphatidylinositol

Ortlund, E.A., Schaaf, G., Redinbo, M.R., Bankaitis, V.

(2008) Mol Cell 29: 191-206

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Uncharacterized protein YKL091C (protein)
Unique Ligands	6PL, B7N

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3HGI \| pdb_00003hgi	Download File View File

Crystal structure of Catechol 1,2-Dioxygenase from the gram-positive Rhodococcus opacus 1CP

Ferraroni, M., Matera, I., Briganti, F., Scozzafava, A.

(2010) J Struct Biol 170: 548-564

Released	2010-01-12
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Rhodococcus opacus
Macromolecule	Catechol 1,2-dioxygenase (protein)
Unique Ligands	6PL, BEZ, CO3, FE

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3HHX \| pdb_00003hhx	Download File View File

Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with pyrogallol

Matera, I., Ferraroni, M., Briganti, F.

(2010) J Struct Biol 170: 548-564

Released	2010-01-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rhodococcus opacus
Macromolecule	Catechol 1,2-dioxygenase (protein)
Unique Ligands	6PL, FE, PYG

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3HHY \| pdb_00003hhy	Download File View File

Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with catechol

Matera, I., Ferraroni, M., Kolomytseva, M., Briganti, F., Scozzafava, A.

(2010) J Struct Biol 170: 548-564

Released	2010-01-12
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Rhodococcus opacus
Macromolecule	Catechol 1,2-dioxygenase (protein)
Unique Ligands	6PL, CAQ, CL, FE, MG

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3HJ8 \| pdb_00003hj8	Download File View File

Crystal structure determination of catechol 1,2-dioxygenase from rhodococcus opacus 1CP in complex with 4-chlorocatechol

Matera, I., Ferraroni, M., Briganti, F., Scozzafava, A.

(2010) J Struct Biol 170: 548-564

Released	2010-01-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Rhodococcus opacus
Macromolecule	Catechol 1,2-dioxygenase (protein)
Unique Ligands	4CL, 6PL, FE

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3HJQ \| pdb_00003hjq	Download File View File

Crystal structure of catechol 1,2-dioxygenase from Rhodococcus opacus 1CP in complex with 3-methylcatechol

Matera, I., Ferraroni, M., Briganti, F., Scozzafava, A.

(2010) J Struct Biol 170: 548-564

Released	2010-01-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rhodococcus opacus
Macromolecule	Catechol 1,2-dioxygenase (protein)
Unique Ligands	6PL, FE, MBD

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3HJS \| pdb_00003hjs	Download File View File

Crystal structure of catechol 1,2-dioxygenase from Rhodococcus opacus 1CP in complex with 4-methylcatechol

Matera, I., Ferraroni, M., Briganti, F., Scozzafava, A.

(2010) J Struct Biol 170: 548-564

Released	2010-01-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rhodococcus opacus
Macromolecule	Catechol 1,2-dioxygenase (protein)
Unique Ligands	6PL, FE, MCT, MG

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3HKP \| pdb_00003hkp	Download File View File

Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with protocatechuate

Matera, I., Ferraroni, M., Kolomytseva, M., Briganti, F., Scozzafava, A.

(2010) J Struct Biol 170: 548-564

Released	2010-01-12
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Rhodococcus opacus
Macromolecule	Catechol 1,2-dioxygenase (protein)
Unique Ligands	6PL, DHB, FE

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3I4V \| pdb_00003i4v	Download File View File

Crystal structure determination of catechol 1,2-dioxygenase from rhodococcus opacus 1CP in complex with 3-chlorocatechol

Matera, I., Ferraroni, M., Briganti, F., Scozzafava, A.

(2010) J Struct Biol 170: 548-564

Released	2010-01-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rhodococcus opacus
Macromolecule	Catechol 1,2-dioxygenase (protein)
Unique Ligands	3CE, 6PL, FE

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3I4Y \| pdb_00003i4y	Download File View File

Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with 3,5-dichlorocatechol

Matera, I., Ferraroni, M., Kolomytseva, M., Briganti, F., Scozzafava, A.

(2010) J Struct Biol 170: 548-564

Released	2010-01-12
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Rhodococcus opacus
Macromolecule	Catechol 1,2-dioxygenase (protein)
Unique Ligands	35C, 6PL, FE

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3I51 \| pdb_00003i51	Download File View File

Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with 4,5-dichlorocatechol

Matera, I., Ferraroni, M., Kolomytseva, M., Briganti, F., Scozzafava, A.

(2010) J Struct Biol 170: 548-564

Released	2010-01-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rhodococcus opacus
Macromolecule	Catechol 1,2-dioxygenase (protein)
Unique Ligands	45C, 6PL, FE

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6C15 \| pdb_00006c15	Download File View File

CD1c in complex with phosphatidylcholine

Wun, K.S., Rossjohn, J.

(2018) Nat Immunol 19: 397-406

Released	2018-03-21
Method	X-RAY DIFFRACTION 3.21 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) T-cell surface glycoprotein CD1c (protein)
Unique Ligands	6PL, BME, D12, EDO, MES, NA, NAG, SO4

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6RQF \| pdb_00006rqf	Download File View File

3.6 Angstrom cryo-EM structure of the dimeric cytochrome b6f complex from Spinacia oleracea with natively bound thylakoid lipids and plastoquinone molecules

Malone, L.A., Qian, P., Mayneord, G.E., Hitchcock, A., Farmer, D., Thompson, R., Swainsbury, D.J.K., Ranson, N., Hunter, C.N., Johnson, M.P.

(2019) Nature 575: 535-539

Released	2019-11-13
Method	ELECTRON MICROSCOPY 3.58 Å
Organisms	Spinacia oleracea
Macromolecule	Unique protein chains: 8
Unique Ligands	6PL, BCR, CLA, FES, HEC, HEM, LMG, PGV, PL9, SQD

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6Z5R \| pdb_00006z5r	Download File View File

RC-LH1(16) complex from Rhodopseudomonas palustris

Swainsbury, D.J.K., Qian, P., Hitchcock, A., Hunter, C.N.

(2021) Sci Adv 7:

Released	2021-01-13
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Rhodopseudomonas palustris CGA009
Macromolecule	H subunit of photosynthetic reaction center complex (protein) Light-harvesting complex 1 alpha chain (protein) Light-harvesting complex 1 beta chain (protein) Reaction center protein L chain (protein) Reaction center protein M chain (protein)
Unique Ligands	6PL, BCL, BPH, CDL, CRT, FE, LMT, PGT, QAK, U10

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6Z5S \| pdb_00006z5s	Download File View File

RC-LH1(14)-W complex from Rhodopseudomonas palustris

Swainsbury, D.J.K., Qian, P., Hitchcock, A., Hunter, C.N.

(2021) Sci Adv 7:

Released	2021-01-13
Method	ELECTRON MICROSCOPY 2.65 Å
Organisms	Rhodopseudomonas palustris CGA009
Macromolecule	Unique protein chains: 6
Unique Ligands	6PL, BCL, BPH, CDL, CRT, FE, LMT, PGT, QAK, U10

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7DRX \| pdb_00007drx	Download File View File

Cryo-EM structure of Dnf1 from Saccharomyces cerevisiae in 90PS with beryllium fluoride (E2P state)

Xu, J., He, Y., Wu, X., Li, L.

(2022) Cell Rep 38: 110518-110518

Released	2022-03-23
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Alkylphosphocholine resistance protein LEM3 (protein) Phospholipid-transporting ATPase DNF1 (protein)
Unique Ligands	6PL, BEF, MG
Unique branched monosaccharides	BMA, NAG

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7PXE \| pdb_00007pxe	Download File View File

Ca2+ bound Drosophila Slo channel

Raisch, T., Brockmann, A., Ebbinghaus-Kintscher, U., Freigang, J., Gutbrod, O., Kubicek, J., Maertens, B., Hofnagel, O., Raunser, S.

(2021) Nat Commun 12: 7164-7164

Released	2021-12-15
Method	ELECTRON MICROSCOPY 2.38 Å
Organisms	Drosophila melanogaster
Macromolecule	Isoform J of Calcium-activated potassium channel slowpoke (protein)
Unique Ligands	6PL, CA, CLR, K, MG

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7PXG \| pdb_00007pxg	Download File View File

Verruculogen-bound Drosophila Slo channel

Raisch, T., Brockmann, A., Ebbinghaus-Kintscher, U., Freigang, J., Gutbrod, O., Kubicek, J., Maertens, B., Hofnagel, O., Raunser, S.

(2021) Nat Commun 12: 7164-7164

Released	2021-12-15
Method	ELECTRON MICROSCOPY 2.73 Å
Organisms	Drosophila melanogaster
Macromolecule	Isoform J of Calcium-activated potassium channel slowpoke (protein)
Unique Ligands	6PL, 8H5, CA, CLR, K, MG

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7PXH \| pdb_00007pxh	Download File View File

Emodepside-bound Drosophila Slo channel

Raisch, T., Brockmann, A., Ebbinghaus-Kintscher, U., Freigang, J., Gutbrod, O., Kubicek, J., Maertens, B., Hofnagel, O., Raunser, S.

(2021) Nat Commun 12: 7164-7164

Released	2021-12-15
Method	ELECTRON MICROSCOPY 2.59 Å
Organisms	Drosophila melanogaster
Macromolecule	Isoform J of Calcium-activated potassium channel slowpoke (protein)
Unique Ligands	6PL, 8I2, CA, CLR, K, MG

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7R0W \| pdb_00007r0w	Download File View File

2.8 Angstrom cryo-EM structure of the dimeric cytochrome b6f-PetP complex from Synechocystis sp. PCC 6803 with natively bound lipids and plastoquinone molecules

Farmer, D.F., Proctor, M.S., Malone, L.A., Swainsbury, D.P.K., Hawkings, F.R., Hitchcock, A., Johnson, M.P.

(2022) Biochem J 479: 1487-1503

Released	2022-07-06
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Synechocystis Synechocystis sp. PCC 6803
Macromolecule	Unique protein chains: 9
Unique Ligands	2WA, 6PL, CLA, ECH, FES, HEC, HEM, LFA, LMG, PGV, PL9, SQD

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7WHV \| pdb_00007whv	Download File View File

Cryo-EM structure of Dnf1 from Saccharomyces cerevisiae in detergent with beryllium fluoride (E2P state)

Xu, J., He, Y., Wu, X., Li, L.

(2022) Cell Rep 38: 110518-110518

Released	2022-03-23
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Alkylphosphocholine resistance protein LEM3 (protein) Phospholipid-transporting ATPase DNF1 (protein)
Unique Ligands	6PL, BEF, MG
Unique branched monosaccharides	BMA, NAG

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8IZD \| pdb_00008izd	Download File View File

Cryo-EM structure of the C26-CoA-bound Lac1-Lip1 complex

Xie, T., Fang, Q., Gong, X.

(2023) EMBO J 42: e114889-e114889

Released	2023-12-13
Method	ELECTRON MICROSCOPY 3.09 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Ceramide synthase LAC1 (protein) Ceramide synthase subunit LIP1 (protein)
Unique Ligands	6PL, 9NY

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8IZF \| pdb_00008izf	Download File View File

Cryo-EM structure of the Lac1-Lip1 (Lip1-S74F) complex

Xie, T., Fang, Q., Gong, X.

(2023) EMBO J 42: e114889-e114889

Released	2023-12-13
Method	ELECTRON MICROSCOPY 3.85 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Ceramide synthase LAC1 (protein) Ceramide synthase subunit LIP1 (protein)
Unique Ligands	6PL

1 to 25 of 39 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2H26 | pdb_00002h26

3B7Q | pdb_00003b7q

3B7Z | pdb_00003b7z

3HGI | pdb_00003hgi

3HHX | pdb_00003hhx

3HHY | pdb_00003hhy

3HJ8 | pdb_00003hj8

3HJQ | pdb_00003hjq

3HJS | pdb_00003hjs

3HKP | pdb_00003hkp

3I4V | pdb_00003i4v

3I4Y | pdb_00003i4y

3I51 | pdb_00003i51

6C15 | pdb_00006c15

6RQF | pdb_00006rqf

6Z5R | pdb_00006z5r

6Z5S | pdb_00006z5s

7DRX | pdb_00007drx

7PXE | pdb_00007pxe

7PXG | pdb_00007pxg

7PXH | pdb_00007pxh

7R0W | pdb_00007r0w

7WHV | pdb_00007whv

8IZD | pdb_00008izd

8IZF | pdb_00008izf