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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = B1Z

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Search Summary

This query matches 91 Structures.

Refinements

Structure Determination Methodology

experimental (91)

Scientific Name of Source Organism

	synthetic construct (18)
	Homo sapiens (12)
	Parengyodontium album (9)
	Xanthomonas campestris pv. campestris str. ATCC 33913 (9)
	Neisseria gonorrhoeae (5)
	Gallus gallus (4)
	Maricaulis maris MCS10 (4)
	Xanthomonas campestris pv. campestris (4)
	Aquarana catesbeiana (2)
	Bacteroides fragilis (2)

More...

Taxonomy

	Bacteria (38)
	Eukaryota (33)
	other sequences (18)
	Riboviria (2)

Experimental Method

	X-RAY DIFFRACTION (47)
	ELECTRON CRYSTALLOGRAPHY (44)

Polymer Entity Type

Protein (91)

Refinement Resolution (Å)

	1.0 - 1.5 (23)
	1.5 - 2.0 (18)
	2.0 - 2.5 (18)
	2.5 - 3.0 (25)
	3.0 - 3.5 (5)
	3.5 - 4.0 (1)
	4.0 - 4.5 (1)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (4)
	2005 - 2009 (10)
	2010 - 2014 (31)
	2015 - 2019 (40)
	2020 - 2024 (3)

Enzyme Classification Name

	Transferases (38)
	Hydrolases (19)
	Oxidoreductases (4)
	Ligases (2)

Symmetry Type

	Cyclic (37)
	Asymmetric (40)
	Dihedral (13)
	Helical (3)
	Octahedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (26)
	All alpha proteins (5)
	Artifacts (4)
	Alpha and beta proteins (a+b) (5)
	All beta proteins (3)
	Small proteins (1)

AllSelected

1 to 25 of 91 Structures

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1BG7	Download File View File

LOCALIZED UNFOLDING AT THE JUNCTION OF THREE FERRITIN SUBUNITS. A MECHANISM FOR IRON RELEASE?

Takagi, H., Shi, D., Ha, Y., Allewell, N.M., Theil, E.C.

(1998) J Biol Chem 273: 18685-18688

Released	1999-01-13
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Aquarana catesbeiana
Macromolecule	FERRITIN (protein)
Unique Ligands	CA

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1C9Y	Download File View File

HUMAN ORNITHINE TRANSCARBAMYLASE: CRYSTALLOGRAPHIC INSIGHTS INTO SUBSTRATE RECOGNITION AND CATALYTIC MECHANISM

Shi, D., Yu, X., Morizono, H., Tuchman, M., Allewell, N.M.

(2000) Proteins 39: 271-277

Released	2000-06-06
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	ORNITHINE CARBAMOYLTRANSFERASE (protein)
Unique Ligands	CP, NVA

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1EP9	Download File View File

HUMAN ORNITHINE TRANSCARBAMYLASE: CRYSTALLOGRAPHIC INSIGHTS INTO SUBSTRATE RECOGNITION AND CONFORMATIONAL CHANGE

Shi, D., Morizono, H., Yu, X., Allewell, N.M., Tuchman, M.

(2001) Biochem J 354: 501-509

Released	2001-04-04
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	ORNITHINE TRANSCARBAMYLASE (protein)
Unique Ligands	CP

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1FVO	Download File View File

CRYSTAL STRUCTURE OF HUMAN ORNITHINE TRANSCARBAMYLASE COMPLEXED WITH CARBAMOYL PHOSPHATE

Shi, D., Morizono, H., Yu, X., Allewell, N.M., Tuchman, M.

(2001) Biochem J 354: 501-509

Released	2001-04-04
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	ORNITHINE TRANSCARBAMYLASE (protein)
Unique Ligands	CP

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1JS1	Download File View File

Crystal Structure of a new transcarbamylase from the anaerobic bacterium Bacteroides fragilis at 2.0 A resolution

Shi, D., Gallegos, R., DePonte III, J., Morizono, H., Yu, X., Allewell, N.M., Malamy, M., Tuchman, M.

(2002) J Mol Biol 320: 899-908

Released	2002-07-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacteroides fragilis
Macromolecule	Transcarbamylase (protein)
Unique Ligands	PO4

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1MFR	Download File View File

CRYSTAL STRUCTURE OF M FERRITIN

Ha, Y., Shi, D., Allewell, N.M.

(1999) J Biol Inorg Chem 4: 243-256

Released	1999-06-22
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Aquarana catesbeiana
Macromolecule	M FERRITIN (protein)
Unique Ligands	MG

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1OTH	Download File View File

CRYSTAL STRUCTURE OF HUMAN ORNITHINE TRANSCARBAMOYLASE COMPLEXED WITH N-PHOSPHONACETYL-L-ORNITHINE

Shi, D., Morizono, H., Ha, Y., Aoyagi, M., Tuchman, N., Allewell, N.M.

(1998) J Biol Chem 273: 34247-34254

Released	1999-10-06
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (ORNITHINE TRANSCARBAMOYLASE) (protein)
Unique Ligands	PAO

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2F7V	Download File View File

Structure of acetylcitrulline deacetylase complexed with one Co

Shi, D., Yu, X., Roth, L., Allewell, N.M., Tuchman, M.

(2007) Biophys Chem 126: 86-93

Released	2006-09-26
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Xanthomonas campestris
Macromolecule	aectylcitrulline deacetylase (protein)
Unique Ligands	CO

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2F8H	Download File View File

Structure of acetylcitrulline deacetylase from Xanthomonas campestris in metal-free form

Shi, D., Yu, X., Roth, L., Allewell, N.M., Tuchman, M.

(2007) Biophys Chem 126: 86-93

Released	2006-09-26
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Xanthomonas campestris
Macromolecule	aectylcitrulline deacetylase (protein)

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2FG6	Download File View File

N-succinyl-L-ornithine transcarbamylase from B. fragilis complexed with sulfate and N-succinyl-L-norvaline

Shi, D., Yu, X., Malamy, M.H., Allewell, N.M., Mendel, T.

(2006) J Biol Chem 281: 20623-20631

Released	2006-05-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bacteroides fragilis NCTC 9343
Macromolecule	putative ornithine carbamoyltransferase (protein)
Unique Ligands	SN0, SO4

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2FG7	Download File View File

N-succinyl-L-ornithine transcarbamylase from B. fragilis complexed with carbamoyl phosphate and N-succinyl-L-norvaline

Shi, D., Yu, X., Malamy, M.H., Allewell, N.M., Tuchman, M.

(2006) J Biol Chem 281: 20623-20631

Released	2006-05-23
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Bacteroides fragilis NCTC 9343
Macromolecule	putative ornithine carbamoyltransferase (protein)
Unique Ligands	CP, SN0, SO4

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2G7M	Download File View File

Crystal structure of B. fragilis N-succinylornithine transcarbamylase P90E mutant complexed with carbamoyl phosphate and N-acetylnorvaline

Shi, D., Yu, X., Roth, L., Morizono, H., Allewell, N.M., Tuchman, M.

(2007) Protein Sci 16: 1689-1699

Released	2007-03-06
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Bacteroides fragilis
Macromolecule	putative ornithine carbamoyltransferase (protein)
Unique Ligands	AN0, CP, SO4

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2R8V	Download File View File

Native structure of N-acetylglutamate synthase from Neisseria gonorrhoeae

Shi, D., Sagar, V., Jin, Z., Yu, X., Caldovic, L., Morizono, H., Allewell, N.M., Tuchman, M.

(2008) J Biol Chem 283: 7176-7184

Released	2008-01-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Neisseria gonorrhoeae
Macromolecule	Putative acetylglutamate synthase (protein)
Unique Ligands	ACO

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2R98	Download File View File

Crystal Structure of N-acetylglutamate synthase (selenoMet substituted) from Neisseria gonorrhoeae

Shi, D., Sagar, V., Jin, Z., Yu, X., Caldovic, L., Morizono, H., Allewell, N.M., Tuchman, M.

(2008) J Biol Chem 283: 7176-7184

Released	2008-01-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Neisseria gonorrhoeae
Macromolecule	Putative acetylglutamate synthase (protein)
Unique Ligands	ACO

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3B8G	Download File View File

Crysta structure of N-acetylglutamate synthase from Neisseria gonorrhoeae complexed with coenzyme A and N-acetyl-glutamate

Shi, D., Sagar, V., Jin, Z., Yu, X., Caldovic, L., Morizono, H., Allewell, N.M., Tuchman, M.

(2008) J Biol Chem 283: 7176-7184

Released	2008-01-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Neisseria gonorrhoeae
Macromolecule	Putative acetylglutamate synthase (protein)
Unique Ligands	COA, NLG

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3D2M	Download File View File

Crystal structure of N-acetylglutamate synthase from Neisseria gonorrhoeae complexed with coenzyme A and L-glutamate

Shi, D., Min, L., Jin, Z., Allewell, N.M., Tuchman, M.

(2009) J Biol Chem 284: 4873-4880

Released	2008-12-23
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Neisseria gonorrhoeae
Macromolecule	Putative acetylglutamate synthase (protein)
Unique Ligands	COA, GLU

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3D2P	Download File View File

Crystal structure of N-acetylglutamate synthase from Neisseria gonorrhoeae complexed with coenzyme A and L-arginine

Shi, D., Min, L., Jin, Z., Allewell, N.M., Tuchman, M.

(2009) J Biol Chem 284: 4873-4880

Released	2008-12-23
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Neisseria gonorrhoeae
Macromolecule	Putative acetylglutamate synthase (protein)
Unique Ligands	ARG, COA

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3J4G	Download File View File

Structure of lysozyme solved by MicroED to 2.9 A

Shi, D., Nannenga, B.L., Iadanza, M.G., Gonen, T.

(2013) Elife 2: e01345-e01345

Released	2013-11-13
Method	ELECTRON CRYSTALLOGRAPHY 2.901 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)

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3J6K	Download File View File

2.5A structure of lysozyme solved by MicroED

Nannenga, B.L., Shi, D., Leslie, A.G.W., Gonen, T.

(2014) Nat Methods 11: 927-930

Released	2014-08-13
Method	ELECTRON CRYSTALLOGRAPHY 2.5 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)

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3J7B	Download File View File

Catalase solved at 3.2 Angstrom resolution by MicroED

Nannenga, B.L., Shi, D., Hattne, J., Reyes, F.E., Gonen, T.

(2014) Elife 3: e03600-e03600

Released	2014-10-08
Method	ELECTRON CRYSTALLOGRAPHY 3.2 Å
Organisms	Bos taurus
Macromolecule	Catalase (protein)
Unique Ligands	HEM, NDP

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3KZC	Download File View File

Crystal structure of N-acetyl-L-ornithine transcarbamylase

Shi, D., Yu, X., Allewell, N.M., Tuchman, M.

(2005) J Biol Chem 280: 14366-14369

Released	2010-03-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Xanthomonas campestris pv. campestris str. ATCC 33913
Macromolecule	N-acetylornithine carbamoyltransferase (protein)
Unique Ligands	SO4

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3KZK	Download File View File

Crystal structure of acetylornithine transcarbamylase complexed with acetylcitrulline

Shi, D., Yu, X., Allewell, N.M., Tuchman, M.

(2005) J Biol Chem 280: 14366-14369

Released	2010-03-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Xanthomonas campestris pv. campestris str. ATCC 33913
Macromolecule	N-acetylornithine carbamoyltransferase (protein)
Unique Ligands	OLN, SO4

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3KZM	Download File View File

Crystal structure of N-acetyl-L-ornithine transcarbamylase complexed with carbamyl phosphate

Shi, D., Yu, X., Allewell, N.M., Tuchman, M.

(2006) Proteins 64: 532-542

Released	2010-03-31
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Xanthomonas campestris pv. campestris str. ATCC 33913
Macromolecule	N-acetylornithine carbamoyltransferase (protein)
Unique Ligands	CP, GOL, SO4

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3KZN	Download File View File

Crystal structure of N-acetyl-L-ornithine transcarbamylase complexed with N-acetyl-L-ornirthine

Shi, D., Yu, X., Allewell, N.M., Tuchman, M.

(2006) Proteins 64: 532-542

Released	2010-03-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Xanthomonas campestris pv. campestris str. ATCC 33913
Macromolecule	N-acetylornithine carbamoyltransferase (protein)
Unique Ligands	AOR, GOL, SO4

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3KZO	Download File View File

Crystal structure of N-acetyl-L-ornithine transcarbamylase complexed with carbamyl phosphate and N-acetyl-L-norvaline

Shi, D., Yu, X., Allewell, N.M., Tuchman, M.

(2006) Proteins 64: 532-542

Released	2010-03-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Xanthomonas campestris pv. campestris str. ATCC 33913
Macromolecule	N-acetylornithine carbamoyltransferase (protein)
Unique Ligands	AN0, CP, GOL, SO4

1 to 25 of 91 Structures

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