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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = BO3

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Search Summary

This query matches 26 Structures.

Refinements

Structure Determination Methodology

experimental (26)

Scientific Name of Source Organism

	synthetic construct (7)
	Homo sapiens (5)
	Streptomyces regensis (5)
	Drosophila melanogaster (3)
	Mus musculus (2)
	Pyrococcus furiosus (2)
	Saccharomyces cerevisiae (2)
	Saccharomyces cerevisiae S288C (2)
	Xenopus laevis (2)
	Pyrococcus furiosus DSM 3638 (1)

More...

Taxonomy

	Eukaryota (14)
	other sequences (7)
	Bacteria (5)
	Archaea (3)
	Eukaryota (eukaryotes) (1)
	Riboviria (1)

Experimental Method

	SOLUTION NMR (16)
	X-RAY DIFFRACTION (8)
	SOLID-STATE NMR (2)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (19)
	RNA (11)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (4)
	2.5 - 3.0 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (1)
	2010 - 2014 (5)
	2015 - 2019 (7)
	2020 - 2024 (12)

Enzyme Classification Name

	Transferases (5)
	Hydrolases (3)

Membrane Protein Annotation

mpstruc (1)

Symmetry Type

	Asymmetric (16)
	Cyclic (3)

SCOP Classification

	All alpha proteins (2)
	All beta proteins (1)
	Alpha and beta proteins (a+b) (1)
	Alpha and beta proteins (a/b) (1)
	Artifacts (1)

AllSelected

1 to 25 of 26 Structures

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1OJ5	Download File View File

Crystal structure of the Nco-A1 PAS-B domain bound to the STAT6 transactivation domain LXXLL motif

Razeto, A., Ramakrishnan, V., Giller, K., Lakomek, N., Carlomagno, T., Griesinger, C., Lodrini, M., Litterst, C.M., Pftizner, E., Becker, S.

(2004) J Mol Biol 336: 319

Released	2004-02-12
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 6 (protein) STEROID RECEPTOR COACTIVATOR 1A (protein)
Unique Ligands	IOD

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2KDU	Download File View File

Structural basis of the Munc13-1/Ca2+-Calmodulin interaction: A novel 1-26 calmodulin binding motif with a bipartite binding mode

Rodriguez-Castaneda, F.A., Maestre-Martinez, M., Coudevylle, N., Dimova, K., Jahn, O., Junge, H., Becker, S., Brose, N., Carlomagno, T., Griesinger, C.

(2010) EMBO J 29: 680-691

Released	2009-12-15
Method	SOLUTION NMR
Organisms	Rattus norvegicus Xenopus laevis
Macromolecule	Calmodulin (protein) Protein unc-13 homolog A (protein)
Unique Ligands	CA

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2M58	Download File View File

Structure of 2'-5' AG1 lariat forming ribozyme in its inactive state

Carlomagno, T., Amata, I., Codutti, L., Falb, M., Fohrer, J., Simon, B.

(2013) J Am Chem Soc 135: 4403-4411

Released	2013-04-03
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	RNA (59-MER) (nucleic acid)

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2N0R	Download File View File

RNA structure determination by solid-state NMR spectroscopy

Marchanka, A., Simon, B., Althoff-Ospelt, G., Carlomagno, T.

(2015) Nat Commun 6: 7024-7024

Released	2015-05-20
Method	SOLID-STATE NMR
Organisms	synthetic construct
Macromolecule	RNA (5'-R(GPCPUPGPAPGPCPUPCPGPAPAPAPGPAPGPCPAPAPUPGPAPUPGPUPC)-3') (nucleic acid)

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2N2O	Download File View File

Structure of murine tumour necrosis factor alpha CDE RNA

Codutti, L., Leppek, K., Zalesak, J., Windeisen, V., Masiewicz, P., Stoecklin, G., Carlomagno, T.

(2015) Structure 23: 1437-1447

Released	2015-08-05
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	RNA (5'-R(PGPCPAPUPGPUPUPUPUPCPUPGPUPGPAPAPAPAPCPGPGPUP*U)-3') (nucleic acid)

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2N2P	Download File View File

Solution structure of a double base-pair inversion mutant of murine tumour necrosis factor alpha CDE-23 RNA

Codutti, L., Leppek, K., Zalesak, J., Windeisen, V., Masiewicz, P., Stoecklin, G., Carlomagno, T.

(2015) Structure 23: 1437-1447

Released	2015-08-05
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	RNA (5'-R(PGPCPAPUPGPUPUPUPAPGPUPGPUPCPUPAPAPAPCPGPGPUP*U)-3') (nucleic acid)

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2XEB	Download File View File

NMR STRUCTURE OF THE PROTEIN-UNBOUND SPLICEOSOMAL U4 SNRNA 5' STEM LOOP

Falb, M., Amata, I., Gabel, F., Simon, B., Carlomagno, T.

(2010) Nucleic Acids Res 38: 6274-6285

Released	2010-05-26
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	5'-R(PGPAPUPCPGPUPAPGPCPCPAPAPUPGPAP GPGPUPU)-3' (nucleic acid) 5'-R(PGPCPCPGPAPGPGPCPGPCPGPAPUP*C)-3' (nucleic acid)

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2XFM	Download File View File

Complex structure of the MIWI Paz domain bound to methylated single stranded RNA

Simon, B., Kirkpatrick, J.P., Eckhardt, S., Sehr, P., Andrade-Navarro, M.A., Pillai, R.S., Carlomagno, T.

(2011) Structure 19: 172

Released	2011-01-26
Method	SOLUTION NMR
Organisms	Mus musculus synthetic construct
Macromolecule	PIWI-LIKE PROTEIN 1 (protein) 5'-R(APCPCPGPAPCPUP(OMU)P)-3' (nucleic acid)

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4BD3	Download File View File

Phf19 links methylated lysine 36 of histone H3 to regulation of Polycomb activity

Lapinaite, A., Simon, B., Carlomagno, T.

(2012) Nat Struct Mol Biol 19: 1257

Released	2012-10-31
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	HISTONE H3 (protein) PHD FINGER PROTEIN 19 (protein)

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4BY9	Download File View File

The structure of the Box CD enzyme reveals regulation of rRNA methylation

Lapinaite, A., Simon, B., Skjaerven, L., Rakwalska-Bange, M., Gabel, F., Carlomagno, T.

(2013) Nature 502: 519

Released	2013-10-09
Method	SOLUTION NMR
Organisms	Pyrococcus furiosus
Macromolecule	50S RIBOSOMAL PROTEIN L7AE (protein) FIBRILLARIN-LIKE RRNA/TRNA 2'-O-METHYLTRANSFERASE (protein) NOP5/NOP56 RELATED PROTEIN (protein) 5'-R(UPCPGPCPCPCPAPUPCPAP*CP)-3' (nucleic acid) SSR26 (nucleic acid)

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5A17	Download File View File

The structure of the SOLE element of oskar mRNA

Simon, B., Masiewicz, P., Ephrussi, A., Carlomagno, T.

(2015) RNA 21: 1444-1453

Released	2015-05-06
Method	SOLUTION NMR
Organisms	Drosophila melanogaster
Macromolecule	OSKAR MRNA (nucleic acid)

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5A18	Download File View File

The structure of the SOLE element of oskar mRNA

Simon, B., Masiewicz, P., Ephrussi, A., Carlomagno, T.

(2015) RNA 21: 1444-1453

Released	2015-05-06
Method	SOLUTION NMR
Organisms	Drosophila melanogaster
Macromolecule	OSKAR MRNA (nucleic acid)

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6F0Y	Download File View File

Rtt109 peptide bound to Asf1

Lercher, L., Kirkpatrick, J.P., Carlomagno, T.

(2018) Nucleic Acids Res 46: 2279-2289

Released	2017-12-27
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Histone chaperone ASF1 (protein) histone acetyltransferase Rtt109 C-terminus (protein)

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6O22	Download File View File

Structure of Asf1-H3:H4-Rtt109-Vps75 histone chaperone-lysine acetyltransferase complex with the histone substrate.

Danilenko, N., Carlomagno, T., Kirkpatrick, J.P.

(2019) Nat Commun 10: 3435-3435

Released	2019-07-31
Method	SOLUTION NMR SOLUTION SCATTERING
Organisms	Saccharomyces cerevisiae S288C Xenopus laevis
Macromolecule	Histone H3.2 (protein) Histone H4 (protein) Histone acetyltransferase RTT109 (protein) Histone chaperone ASF1 (protein) Vacuolar protein sorting-associated protein 75 (protein)

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6ROY	Download File View File

Structure of the N-SH2 domain of the human tyrosine-protein phosphatase non-receptor type 11 in complex with the phosphorylated immune receptor tyrosine-based inhibitory motif

Krausze, J., Sikorska, J., Carlomagno, T.

(2020) Sci Adv 6: eaay4458-eaay4458

Released	2020-02-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Tyrosine-protein phosphatase non-receptor type 11 (protein) immune receptor tyrosine-based inhibitory motif (ITIM) (protein)

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6ROZ	Download File View File

Structure of the N-SH2 domain of the human tyrosine-protein phosphatase non-receptor type 11 in complex with the phosphorylated immune receptor tyrosine-based switch motif

Krausze, J., Sikorska, J., Carlomagno, T.

(2020) Sci Adv 6: eaay4458-eaay4458

Released	2020-02-19
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Tyrosine-protein phosphatase non-receptor type 11 (protein) immune receptor tyrosine-based switch motif (ITSM) (protein)

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6TPH	Download File View File

Structure of a protein-RNA complex by ssNMR

Mumdooh, A., Marchanka, A., Carlomagno, T.

(2020) Angew Chem Int Ed Engl 59: 6866-6873

Released	2020-02-12
Method	SOLID-STATE NMR
Organisms	Pyrococcus furiosus
Macromolecule	50S ribosomal protein L7Ae (protein) RNA (26-MER) (nucleic acid)

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6ZDT	Download File View File

Crystal structure of eukaryotic Fibrillarin with Nop56 N-terminal domain

Hoefler, S., Lukat, P., Carlomagno, T., Blankenfeldt, W.

(2021) RNA 27: 496-512

Released	2021-02-03
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Nucleolar protein 56 (protein) rRNA 2'-O-methyltransferase fibrillarin (protein)

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7OC3	Download File View File

Crystal structure of the third tudor domain of Qin

Dhimole, N., Klug, W., Carlomagno, T.

To be published

Released	2022-05-04
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Drosophila melanogaster
Macromolecule	Qin (protein)
Unique Ligands	PO4

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7OZQ	Download File View File

Crystal structure of archaeal L7Ae bound to eukaryotic kink-loop

Hoefler, S., Lukat, P., Carlomagno, T., Blankenfeldt, W.

(2021) Sci Rep 11: 17561-17561

Released	2021-10-27
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Pyrococcus furiosus DSM 3638 Saccharomyces cerevisiae
Macromolecule	50S ribosomal protein L7Ae (protein) RNA (nucleic acid)
Unique Ligands	ACT, CA, CL, NA

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8AOU	Download File View File

Solution NMR structure of full-length Nsp1 from SARS-CoV-2.

Wang, Y., Kirkpatrick, J.P., Carlomagno, T.

(2023) Structure 31: 128

Released	2022-12-28
Method	SOLUTION NMR
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Host translation inhibitor nsp1 (protein)

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8QNF	Download File View File

Crystal structure of the Condensation domain TomBC from the Tomaymycin non-ribosomal peptide synthetase

Karanth, M., Schmelz, S., Kirkpatrick, J., Krausze, J., Scrima, A., Carlomagno, T.

(2024) Sci Adv 10: eadm9404-eadm9404

Released	2024-06-26
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Streptomyces regensis
Macromolecule	Condensation domain TomBC from the Tomaymycin non-ribosomal peptide synthetase (protein)
Unique Ligands	FMT, GOL, K, NA

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8QPY	Download File View File

Solution NMR structure of the peptidyl carrier domain TomAPCP from the Tomaymycin non-ribosomal peptide synthetase

Karanth, M.N., Kirkpatrick, J.P., Carlomagno, T.

(2024) Sci Adv 10: eadm9404-eadm9404

Released	2024-06-26
Method	SOLUTION NMR
Organisms	Streptomyces regensis
Macromolecule	Carrier protein TomAPCP (protein)

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8QRX	Download File View File

Solution NMR structure of the peptidyl carrier domain TomAPCP from the Tomaymycin non-ribosomal peptide synthetase in its substrate-loaded state

Karanth, M.N., Kirkpatrick, J.P., Carlomagno, T.

(2024) Sci Adv 10: eadm9404-eadm9404

Released	2024-06-26
Method	SOLUTION NMR
Organisms	Streptomyces regensis
Macromolecule	TomAPCP substrate-loaded from the Tomaymycin non-ribosomal peptide synthetase (protein)