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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 8 Structures.

Refinements

Structure Determination Methodology

experimental (8)

Scientific Name of Source Organism

	Influenza B virus (3)
	Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10)) (2)
	La Crosse virus (2)
	Homo sapiens (1)
	Influenza B virus (B/Memphis/13/2003) (1)
	Monkeypox virus (1)
	Orthobunyavirus lacrosseense (1)
	Rotavirus A (1)
	synthetic construct (1)

Taxonomy

	Riboviria (7)
	Eukaryota (1)
	Varidnaviria (1)
	other sequences (1)

Experimental Method

	ELECTRON MICROSCOPY (7)
	X-RAY DIFFRACTION (1)

Polymer Entity Type

	Protein (8)
	RNA (8)
	NA-hybrid (1)

Refinement Resolution (Å)

	2.0 - 2.5 (1)
	2.5 - 3.0 (1)
	3.0 - 3.5 (5)
	3.5 - 4.0 (1)

Release Date

	2015 - 2019 (3)
	2020 - 2024 (5)

Enzyme Classification Name

	Transferases (8)
	Hydrolases (4)

Symmetry Type

Asymmetric (8)

AllSelected

1 to 8 of 8 Structures

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6OGY	Download File View File

In situ structure of Rotavirus RNA-dependent RNA polymerase at duplex-open state

Ding, K., Chang, T., Shen, W., Roy, P., Zhou, Z.H.

(2019) Nat Commun 10: 2216-2216

Released	2019-05-22
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Rotavirus A
Macromolecule	Inner capsid protein VP2 (protein) RNA-dependent RNA polymerase of rotavirus A (protein) RNA (5'-R(PAPGPCPC)-3') (nucleic acid) DNA/RNA (5'-D((GTG))-R(PGP*C)-3') (hybrid)

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6QCS	Download File View File

Influenza B polymerase pre-initiation complex

Cusack, S., Kouba, T.

(2019) Nat Struct Mol Biol 26: 460-470

Released	2019-06-05
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Influenza B virus
Macromolecule	Unique protein chains: 3 Unique nucleic acid chains: 3
Unique Ligands	MG

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6QCT	Download File View File

Influenza B polymerase elongation complex

Cusack, S., Kouba, T.

(2019) Nat Struct Mol Biol 26: 460-470

Released	2019-06-05
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Influenza B virus Influenza B virus (B/Memphis/13/2003)
Macromolecule	Unique protein chains: 3 Unique nucleic acid chains: 3
Unique Ligands	MG

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6SZV	Download File View File

Bat Influenza A polymerase elongation complex with incoming UTP analogue (core + endonuclease only)

Wandzik, J.M., Kouba, T., Cusack, S.

(2020) Cell 181: 877

Released	2020-04-15
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10)) Influenza B virus
Macromolecule	Unique protein chains: 3 Unique nucleic acid chains: 3
Unique Ligands	2KH, M4H, MG

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6T0V	Download File View File

Bat Influenza A polymerase elongation complex with incoming UTP analogue (complete polymerase)

Wandzik, J.M., Kouba, T., Cusack, S.

(2020) Cell 181: 877

Released	2020-04-15
Method	ELECTRON MICROSCOPY 3.02 Å
Organisms	Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10))
Macromolecule	Unique protein chains: 3 Unique nucleic acid chains: 3
Unique Ligands	2KH, M4H, MG

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7ORJ	Download File View File

La Crosse virus polymerase at transcription capped RNA cleavage stage

Arragain, B., Durieux Trouilleton, Q., Baudin, F., Cusack, S., Schoehn, G., Malet, H.

(2022) Nat Commun 13: 902-902

Released	2022-02-16
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	La Crosse virus Orthobunyavirus lacrosseense
Macromolecule	RNA-directed RNA polymerase L (protein) 5' capped RNA (nucleic acid) RNA (5'-R(PAPCPGPAPGPUPGPUPCPGPUPAPCPCPAPAPG)-3') (nucleic acid) RNA (5'-R(PCPUPUPGPGPUPAPGPUPAPCPAPCPUPAPCPU)-3') (nucleic acid)
Unique Ligands	ATP, ZN

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7ORK	Download File View File

La Crosse virus polymerase in transcription mode with cleaved capped RNA entering the polymerase active site

Arragain, B., Durieux Trouilleton, Q., Baudin, F., Cusack, S., Schoehn, G., Malet, H.

(2022) Nat Commun 13: 902-902

Released	2022-02-16
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens La Crosse virus
Macromolecule	RNA-directed RNA polymerase L (protein) RNA (5'-D((GTG))-R(PA)-3') (nucleic acid) RNA (5'-R(PAPCPGPAPGPUPGPUPCPGPUPAPCPCPAPAPG)-3') (nucleic acid) RNA (5'-R(PAPCPUPUPGPGPUPAPGPUPAPCPAPCPUPAPCP*U)-3') (nucleic acid)
Unique Ligands	ATP, MG, ZN

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8OIV	Download File View File

Monkeypox virus VP39 in complex with SAH and cap0

Skvara, P., Chalupska, D., Silhan, J., Klima, M., Boura, E.

(2023) Antiviral Res 216: 105663-105663

Released	2023-08-23
Method	X-RAY DIFFRACTION 2.12 Å
Organisms	Monkeypox virus synthetic construct
Macromolecule	Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase (protein) mGpppGAAAAA (nucleic acid)
Unique Ligands	GTG, SAH

1 to 8 of 8 Structures

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